Wall clock time and date at job start Mon Mar 30 2020 04:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 O 1.42898 * 109.47228 * 60.00083 * 9 7 2 12 12 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 13 13 C 1.50695 * 109.47125 * 175.00037 * 12 9 7 14 14 N 1.30969 * 126.44822 * 90.00131 * 13 12 9 15 15 C 1.35193 * 105.57958 * 179.97438 * 14 13 12 16 16 C 1.48551 * 126.40544 * 180.02562 * 15 14 13 17 17 N 1.32512 * 119.20388 * 359.73224 * 16 15 14 18 18 C 1.32184 * 120.75058 * 179.75519 * 17 16 15 19 19 C 1.38713 * 119.18123 * 0.50997 * 18 17 16 20 20 C 1.38700 * 118.54018 * 359.74855 * 19 18 17 21 21 N 1.32185 * 119.18287 * 359.97438 * 20 19 18 22 22 N 1.30681 * 107.18776 * 0.02562 * 15 14 13 23 23 O 1.21285 * 110.11330 * 359.70161 * 22 15 14 24 24 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 25 25 H 0.96698 * 113.99738 * 60.00140 * 11 9 7 26 26 H 1.09006 * 109.47088 * 295.00120 * 12 9 7 27 27 H 1.09001 * 109.46771 * 54.99545 * 12 9 7 28 28 H 1.07993 * 120.40909 * 180.25890 * 18 17 16 29 29 H 1.08003 * 120.72623 * 179.76676 * 19 18 17 30 30 H 1.07998 * 120.41354 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4300 -2.5751 -1.1665 12 6 2.2454 -3.6620 0.0018 13 6 1.4959 -4.9635 0.1256 14 7 1.0400 -5.6957 -0.8599 15 6 0.4438 -6.7595 -0.2764 16 6 -0.2296 -7.8851 -0.9738 17 7 -0.2802 -7.8877 -2.2979 18 6 -0.8675 -8.8762 -2.9499 19 6 -1.4436 -9.9128 -2.2304 20 6 -1.3768 -9.8755 -0.8455 21 7 -0.7694 -8.8598 -0.2567 22 7 0.5707 -6.6125 1.0159 23 8 1.1762 -5.5908 1.2620 24 1 -0.4850 -0.8401 -0.0004 25 1 0.9225 -2.5300 -1.9975 26 1 2.8124 -3.6564 -0.9292 27 1 2.9289 -3.5547 0.8441 28 1 -0.9019 -8.8748 -4.0293 29 1 -1.9332 -10.7311 -2.7375 30 1 -1.8156 -10.6665 -0.2555 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236553630.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:41 Heat of formation + Delta-G solvation = 38.194970 kcal Electronic energy + Delta-G solvation = -18557.568366 eV Core-core repulsion = 15355.489126 eV Total energy + Delta-G solvation = -3202.079240 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.085 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.78031 -42.11029 -38.53297 -37.06316 -35.07352 -34.71182 -34.24858 -32.94403 -31.13155 -27.28761 -27.06508 -25.73230 -24.58597 -23.84274 -22.47715 -19.71069 -19.35977 -19.12145 -18.53689 -17.83901 -17.06724 -16.54577 -16.27331 -16.12400 -15.63296 -15.44457 -15.00506 -14.69542 -14.54693 -14.21796 -13.60786 -13.14855 -12.81456 -12.51615 -12.28079 -12.25675 -12.15839 -12.11318 -11.89379 -11.83035 -11.18380 -10.60517 -10.49815 -10.44360 -10.12893 -8.59178 -6.45537 -0.81113 0.01665 0.11903 1.12331 1.59830 1.62958 1.68413 1.80507 1.86743 2.48523 2.62610 2.65993 3.20492 3.24774 3.48006 3.62264 3.80430 3.94606 4.04673 4.20622 4.27632 4.31148 4.42504 4.69580 4.75188 4.87251 5.21949 5.33045 5.79573 5.85346 6.16139 6.55254 6.74557 6.94403 7.15334 7.51660 8.78725 Molecular weight = 262.09amu Principal moments of inertia in cm(-1) A = 0.044875 B = 0.004063 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.799792 B = 6889.570399 C = 7176.257507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.018 4.018 3 Si 1.119 2.881 4 H -0.293 1.293 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.652 4.652 8 H 0.072 0.928 9 C 0.217 3.783 10 H 0.023 0.977 11 O -0.592 6.592 12 C -0.038 4.038 13 C 0.209 3.791 14 N -0.464 5.464 15 C 0.204 3.796 16 C 0.364 3.636 17 N -0.511 5.511 18 C 0.136 3.864 19 C -0.181 4.181 20 C 0.137 3.863 21 N -0.520 5.520 22 N -0.364 5.364 23 O 0.080 5.920 24 H 0.265 0.735 25 H 0.369 0.631 26 H 0.123 0.877 27 H 0.128 0.872 28 H 0.215 0.785 29 H 0.210 0.790 30 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.597 -19.573 -5.140 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.940 3.060 4 H -0.219 1.219 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.689 4.689 8 H 0.090 0.910 9 C 0.158 3.842 10 H 0.041 0.959 11 O -0.398 6.398 12 C -0.077 4.077 13 C -0.010 4.010 14 N -0.197 5.197 15 C -0.068 4.068 16 C 0.097 3.903 17 N -0.227 5.227 18 C -0.029 4.029 19 C -0.203 4.203 20 C -0.028 4.028 21 N -0.237 5.237 22 N -0.071 5.071 23 O 0.017 5.983 24 H 0.076 0.924 25 H 0.216 0.784 26 H 0.141 0.859 27 H 0.146 0.854 28 H 0.231 0.769 29 H 0.227 0.773 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.022 -17.967 -4.075 18.423 hybrid contribution -0.015 -2.021 -0.521 2.087 sum -0.037 -19.988 -4.596 20.509 Atomic orbital electron populations 1.70790 1.08404 1.31153 1.45588 1.27342 0.96324 1.06712 0.91581 0.82931 0.73996 0.70883 0.78207 1.21940 1.19107 1.19108 1.22732 0.95438 0.92388 1.58383 0.90996 1.19443 0.88225 0.91438 0.85050 0.95889 1.86475 1.40001 1.96484 1.16832 1.21236 0.97258 0.81934 1.07234 1.29502 0.95085 0.97644 0.78815 1.72082 1.14444 1.03333 1.29834 1.23158 1.01460 0.95567 0.86600 1.18760 0.94917 0.90028 0.86598 1.68215 1.17650 1.28546 1.08255 1.24180 0.88550 0.86969 1.03187 1.23676 0.99285 1.01584 0.95717 1.24145 0.90545 0.93695 0.94386 1.68177 1.10150 1.02921 1.42446 1.74885 1.13146 1.02059 1.16998 1.85294 1.51973 1.25351 1.35690 0.92442 0.78445 0.85894 0.85404 0.76883 0.77276 0.76653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.47 13.53 21.45 0.29 -56.18 16 2 C -0.02 -0.97 5.40 84.65 0.46 -0.51 16 3 Si 1.12 47.53 29.90 68.60 2.05 49.58 16 4 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.65 -33.60 8.76 25.60 0.22 -33.38 16 8 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 9 C 0.22 10.50 2.41 29.85 0.07 10.57 16 10 H 0.02 1.26 8.01 -2.39 -0.02 1.24 16 11 O -0.59 -30.09 11.77 -148.98 -1.75 -31.84 16 12 C -0.04 -1.40 5.46 29.85 0.16 -1.24 16 13 C 0.21 8.32 7.52 88.36 0.66 8.98 16 14 N -0.46 -19.47 11.55 -302.66 -3.50 -22.96 16 15 C 0.20 8.36 7.99 137.37 1.10 9.46 16 16 C 0.36 12.78 7.60 137.66 1.05 13.83 16 17 N -0.51 -15.72 10.34 -189.04 -1.95 -17.67 16 18 C 0.14 2.39 11.30 84.75 0.96 3.35 16 19 C -0.18 -2.00 10.17 22.49 0.23 -1.77 16 20 C 0.14 2.29 11.30 84.75 0.96 3.24 16 21 N -0.52 -15.44 10.33 -189.05 -1.95 -17.39 16 22 N -0.36 -14.96 12.16 -59.29 -0.72 -15.68 16 23 O 0.08 3.18 11.29 74.55 0.84 4.02 16 24 H 0.27 16.91 6.47 -92.70 -0.60 16.31 16 25 H 0.37 16.66 9.04 -74.06 -0.67 15.99 16 26 H 0.12 4.15 8.14 -2.38 -0.02 4.13 16 27 H 0.13 4.09 8.14 -2.39 -0.02 4.07 16 28 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.21 -0.02 8.06 -2.91 -0.02 -0.04 16 30 H 0.22 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -78.49 281.84 -0.12 -78.61 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.70 Total: 16.99 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 5.87 Total: 12.53 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -7.83 Total: -129.88 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.91 Total: -27.83 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.05 Total: 49.58 kcal Total: -78.49 -0.12 -78.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236553630.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.805 kcal (2) G-P(sol) polarization free energy of solvation -78.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds