Wall clock time and date at job start Mon Mar 30 2020 04:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42904 * 109.47463 * 2 1 4 4 C 1.42900 * 114.00176 * 179.15741 * 3 2 1 5 5 C 1.50702 * 109.43283 * 305.37414 * 4 3 2 6 6 H 1.07995 * 120.00234 * 124.93056 * 5 4 3 7 7 C 1.37885 * 119.99911 * 304.93537 * 5 4 3 8 8 N 1.31511 * 119.99870 * 191.46128 * 7 5 4 9 9 Si 1.86801 * 120.00051 * 11.45367 * 7 5 4 10 10 H 1.48505 * 109.46993 * 85.06741 * 9 7 5 11 11 H 1.48500 * 109.47123 * 205.06932 * 9 7 5 12 12 H 1.48500 * 109.47125 * 325.07317 * 9 7 5 13 13 C 1.51505 * 109.43351 * 185.46891 * 4 3 2 14 14 C 1.53365 * 107.14086 * 341.86862 * 13 4 3 15 15 C 1.45201 * 115.15778 * 269.67320 * 14 13 4 16 16 S 1.83404 * 110.32403 * 65.12592 * 15 14 13 17 17 O 1.42093 * 108.58530 * 44.30691 * 16 15 14 18 18 O 1.42101 * 108.58043 * 175.35529 * 16 15 14 19 19 C 1.79920 * 101.87311 * 289.82896 * 16 15 14 20 20 C 1.52864 * 109.43721 * 65.28440 * 4 3 2 21 21 H 1.08995 * 109.47575 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47421 * 299.99969 * 1 2 3 23 23 H 1.09003 * 109.46904 * 59.99962 * 1 2 3 24 24 H 1.09002 * 109.47421 * 240.00030 * 2 1 3 25 25 H 1.09004 * 109.47389 * 119.99834 * 2 1 3 26 26 H 0.97001 * 119.99723 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.92936 * 101.27924 * 13 4 3 28 28 H 1.09001 * 109.92281 * 222.46475 * 13 4 3 29 29 H 1.09005 * 108.34518 * 31.14544 * 14 13 4 30 30 H 1.09001 * 108.34887 * 148.38079 * 14 13 4 31 31 H 1.08995 * 109.32729 * 185.39107 * 15 14 13 32 32 H 1.09000 * 109.32446 * 305.03975 * 15 14 13 33 33 H 1.09000 * 108.79914 * 208.01372 * 19 16 15 34 34 H 1.08994 * 108.80065 * 326.36156 * 19 16 15 35 35 H 1.09001 * 108.23012 * 199.53074 * 20 4 3 36 36 H 1.09009 * 108.23006 * 316.28488 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0192 5 6 3.9794 0.6852 1.1895 6 1 4.7287 -0.0759 1.0297 7 6 3.5245 0.9480 2.4644 8 7 4.1523 0.4426 3.5037 9 14 2.0168 2.0218 2.7154 10 1 0.7921 1.1891 2.6050 11 1 2.0717 2.6453 4.0621 12 1 1.9878 3.0845 1.6786 13 6 3.8191 2.9184 0.1536 14 6 2.5917 3.7509 -0.2367 15 6 2.5046 4.1002 -1.6434 16 16 2.2848 2.5910 -2.6621 17 8 1.3155 1.7604 -2.0378 18 8 2.0961 2.9816 -4.0153 19 6 3.8961 1.8048 -2.5116 20 6 4.0035 0.8930 -1.2797 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8321 0.6271 4.4005 27 1 4.1018 3.1341 1.1840 28 1 4.6494 3.1448 -0.5154 29 1 1.6968 3.1902 0.0335 30 1 2.6044 4.6738 0.3431 31 1 1.6560 4.7665 -1.7978 32 1 3.4209 4.6067 -1.9466 33 1 4.0819 1.2104 -3.4062 34 1 4.6596 2.5794 -2.4405 35 1 5.0564 0.6633 -1.1164 36 1 3.4863 -0.0406 -1.5015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261358478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:04 Heat of formation + Delta-G solvation = -90.755340 kcal Electronic energy + Delta-G solvation = -20577.987346 eV Core-core repulsion = 17577.007944 eV Total energy + Delta-G solvation = -3000.979402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.107 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.92208 -36.33069 -35.41025 -34.81403 -32.79941 -32.30158 -30.21989 -28.52785 -25.87036 -23.83868 -22.08976 -21.41740 -19.11186 -18.09119 -17.19181 -16.49913 -16.31937 -15.19679 -15.01273 -14.83607 -14.56382 -14.01680 -13.41707 -13.36131 -12.79979 -12.75714 -12.61444 -12.04254 -11.59018 -11.51407 -11.41251 -11.24278 -11.15841 -11.00827 -10.81479 -10.41252 -10.30008 -10.16933 -10.03078 -9.79561 -9.52275 -9.37915 -8.88994 -8.54831 -7.88529 -6.16747 -4.25395 0.50388 3.14167 3.46416 3.54621 3.66298 4.07654 4.46808 4.51314 4.82073 4.90384 5.01310 5.14601 5.23909 5.44416 5.64219 5.68657 5.95223 6.03725 6.09294 6.18836 6.27500 6.30676 6.41745 6.46150 6.59540 6.80138 6.82570 6.97742 7.09665 7.18825 7.42013 7.56426 8.18801 8.65402 8.83776 9.46228 10.91938 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027057 B = 0.010792 C = 0.010165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.607114 B = 2593.875616 C = 2753.773600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.083 3.917 3 O -0.366 6.366 4 C 0.188 3.812 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.085 3.915 8 N -0.888 5.888 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.321 1.321 12 H -0.223 1.223 13 C -0.110 4.110 14 C -0.136 4.136 15 C -0.569 4.569 16 S 2.403 3.597 17 O -0.894 6.894 18 O -0.973 6.973 19 C -0.611 4.611 20 C -0.105 4.105 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.052 0.948 26 H 0.265 0.735 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.061 0.939 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 5.029 -9.172 10.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.007 3.993 3 O -0.287 6.287 4 C 0.149 3.851 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.120 4.120 8 N -0.524 5.524 9 Si 0.705 3.295 10 H -0.203 1.203 11 H -0.251 1.251 12 H -0.147 1.147 13 C -0.148 4.148 14 C -0.173 4.173 15 C -0.698 4.698 16 S 2.585 3.415 17 O -0.891 6.891 18 O -0.970 6.970 19 C -0.740 4.740 20 C -0.143 4.143 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.095 0.905 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.249 4.877 -9.498 11.160 hybrid contribution 0.378 0.521 0.652 0.916 sum -2.871 5.398 -8.846 10.753 Atomic orbital electron populations 1.21765 0.96268 1.00122 1.02366 1.21896 0.92807 0.85285 0.99333 1.87736 1.21760 1.25989 1.93186 1.19268 0.80218 0.93287 0.92342 1.21089 1.25097 1.22426 0.89691 0.90750 1.24955 0.96579 0.94986 0.95450 1.69982 1.38868 1.44892 0.98647 0.87156 0.83356 0.83118 0.75911 1.20257 1.25073 1.14692 1.22010 0.95375 0.94303 1.03085 1.20286 1.04214 1.01441 0.91389 1.28763 1.09887 1.19766 1.11357 1.08539 0.78696 0.78961 0.75328 1.93662 1.55644 1.63930 1.75821 1.93525 1.85536 1.83714 1.34223 1.30299 1.23629 1.12328 1.07758 1.21754 1.03563 0.97713 0.91301 0.93307 0.93388 0.91226 0.94894 0.93030 0.92571 0.89656 0.92163 0.86360 0.92041 0.86180 0.86917 0.86080 0.86130 0.90461 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 10.14 37.15 0.38 -2.38 16 2 C 0.08 1.72 4.24 37.15 0.16 1.88 16 3 O -0.37 -7.62 1.62 -60.04 -0.10 -7.72 16 4 C 0.19 3.86 0.27 -92.60 -0.02 3.83 16 5 C -0.55 -13.80 7.04 -34.44 -0.24 -14.04 16 6 H 0.07 2.06 7.90 -52.49 -0.41 1.65 16 7 C 0.09 2.29 4.83 -17.82 -0.09 2.20 16 8 N -0.89 -25.82 13.96 55.43 0.77 -25.04 16 9 Si 0.87 20.85 23.52 -169.99 -4.00 16.86 16 10 H -0.28 -6.72 6.26 56.52 0.35 -6.36 16 11 H -0.32 -8.03 7.11 56.52 0.40 -7.63 16 12 H -0.22 -4.72 2.94 56.52 0.17 -4.55 16 13 C -0.11 -2.03 4.31 -27.30 -0.12 -2.14 16 14 C -0.14 -2.24 3.37 -30.21 -0.10 -2.34 16 15 C -0.57 -7.60 5.88 33.49 0.20 -7.40 16 16 S 2.40 36.33 5.16 -107.50 -0.55 35.77 16 17 O -0.89 -16.01 11.55 -67.47 -0.78 -16.79 16 18 O -0.97 -16.86 18.10 -57.83 -1.05 -17.90 16 19 C -0.61 -8.50 5.56 37.49 0.21 -8.29 16 20 C -0.10 -1.84 4.37 -26.47 -0.12 -1.96 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.93 7.30 -51.93 -0.38 0.55 16 23 H 0.07 1.28 6.96 -51.93 -0.36 0.91 16 24 H 0.03 0.64 6.22 -51.93 -0.32 0.32 16 25 H 0.05 1.19 6.40 -51.93 -0.33 0.86 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.08 1.73 6.12 -51.93 -0.32 1.42 16 28 H 0.06 0.93 6.34 -51.93 -0.33 0.60 16 29 H 0.12 2.21 4.14 -51.93 -0.22 1.99 16 30 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 31 H 0.12 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.12 1.46 8.14 -51.70 -0.42 1.04 16 34 H 0.12 1.38 7.07 -51.71 -0.37 1.01 16 35 H 0.08 1.36 7.86 -51.93 -0.41 0.95 16 36 H 0.07 1.24 5.96 -51.92 -0.31 0.93 16 LS Contribution 261.48 15.07 3.94 3.94 Total: -1.00 -31.36 261.48 -6.80 -38.16 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.28 Total: 3.36 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 0.25 Total: -30.64 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.77 Total: -25.04 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -1.92 Total: -42.40 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.00 Total: 16.86 kcal Atomic # 16 Polarization: 36.33 SS G_CDS: -0.55 Total: 35.77 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.36 -6.80 -38.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261358478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.596 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds