Wall clock time and date at job start Mon Mar 30 2020 04:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42904 * 109.47463 * 2 1 4 4 C 1.42900 * 114.00176 * 179.15741 * 3 2 1 5 5 C 1.50702 * 109.43283 * 305.37414 * 4 3 2 6 6 H 1.07995 * 120.00234 * 124.93056 * 5 4 3 7 7 C 1.37885 * 119.99911 * 304.93537 * 5 4 3 8 8 N 1.31511 * 119.99870 * 191.46128 * 7 5 4 9 9 Si 1.86801 * 120.00051 * 11.45367 * 7 5 4 10 10 H 1.48505 * 109.46993 * 85.06741 * 9 7 5 11 11 H 1.48500 * 109.47123 * 205.06932 * 9 7 5 12 12 H 1.48500 * 109.47125 * 325.07317 * 9 7 5 13 13 C 1.51505 * 109.43351 * 185.46891 * 4 3 2 14 14 C 1.53365 * 107.14086 * 341.86862 * 13 4 3 15 15 C 1.45201 * 115.15778 * 269.67320 * 14 13 4 16 16 S 1.83404 * 110.32403 * 65.12592 * 15 14 13 17 17 O 1.42093 * 108.58530 * 44.30691 * 16 15 14 18 18 O 1.42101 * 108.58043 * 175.35529 * 16 15 14 19 19 C 1.79920 * 101.87311 * 289.82896 * 16 15 14 20 20 C 1.52864 * 109.43721 * 65.28440 * 4 3 2 21 21 H 1.08995 * 109.47575 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47421 * 299.99969 * 1 2 3 23 23 H 1.09003 * 109.46904 * 59.99962 * 1 2 3 24 24 H 1.09002 * 109.47421 * 240.00030 * 2 1 3 25 25 H 1.09004 * 109.47389 * 119.99834 * 2 1 3 26 26 H 0.97001 * 119.99723 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.92936 * 101.27924 * 13 4 3 28 28 H 1.09001 * 109.92281 * 222.46475 * 13 4 3 29 29 H 1.09005 * 108.34518 * 31.14544 * 14 13 4 30 30 H 1.09001 * 108.34887 * 148.38079 * 14 13 4 31 31 H 1.08995 * 109.32729 * 185.39107 * 15 14 13 32 32 H 1.09000 * 109.32446 * 305.03975 * 15 14 13 33 33 H 1.09000 * 108.79914 * 208.01372 * 19 16 15 34 34 H 1.08994 * 108.80065 * 326.36156 * 19 16 15 35 35 H 1.09001 * 108.23012 * 199.53074 * 20 4 3 36 36 H 1.09009 * 108.23006 * 316.28488 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0192 5 6 3.9794 0.6852 1.1895 6 1 4.7287 -0.0759 1.0297 7 6 3.5245 0.9480 2.4644 8 7 4.1523 0.4426 3.5037 9 14 2.0168 2.0218 2.7154 10 1 0.7921 1.1891 2.6050 11 1 2.0717 2.6453 4.0621 12 1 1.9878 3.0845 1.6786 13 6 3.8191 2.9184 0.1536 14 6 2.5917 3.7509 -0.2367 15 6 2.5046 4.1002 -1.6434 16 16 2.2848 2.5910 -2.6621 17 8 1.3155 1.7604 -2.0378 18 8 2.0961 2.9816 -4.0153 19 6 3.8961 1.8048 -2.5116 20 6 4.0035 0.8930 -1.2797 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8321 0.6271 4.4005 27 1 4.1018 3.1341 1.1840 28 1 4.6494 3.1448 -0.5154 29 1 1.6968 3.1902 0.0335 30 1 2.6044 4.6738 0.3431 31 1 1.6560 4.7665 -1.7978 32 1 3.4209 4.6067 -1.9466 33 1 4.0819 1.2104 -3.4062 34 1 4.6596 2.5794 -2.4405 35 1 5.0564 0.6633 -1.1164 36 1 3.4863 -0.0406 -1.5015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261358478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:04 Heat of formation + Delta-G solvation = -113.903645 kcal Electronic energy + Delta-G solvation = -20578.991132 eV Core-core repulsion = 17577.007944 eV Total energy + Delta-G solvation = -3001.983188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.107 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47419 -37.57712 -36.64274 -36.23328 -34.56596 -33.86223 -31.74184 -30.07715 -27.41773 -25.41558 -23.58426 -22.85629 -20.63656 -19.35209 -18.99840 -17.90186 -17.61092 -16.70666 -16.45284 -16.24945 -16.00286 -15.55183 -14.99425 -14.79677 -14.48295 -14.11927 -13.98465 -13.39459 -13.12613 -12.81365 -12.79152 -12.69356 -12.64559 -12.47706 -12.41806 -12.04333 -12.03282 -11.66754 -11.48078 -11.23893 -11.13630 -10.71700 -10.61017 -10.53717 -9.57434 -8.27383 -6.36047 -0.62707 1.51853 1.57451 1.72612 2.04809 2.50396 2.95796 3.03042 3.30042 3.41516 3.82112 3.93786 4.04564 4.21233 4.36811 4.43841 4.55539 4.64062 4.75699 4.79843 4.83153 4.96228 4.99917 5.04036 5.17132 5.28569 5.33153 5.41569 5.54068 5.61664 5.77697 5.93246 6.14977 6.69995 6.96162 7.39497 8.84808 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027057 B = 0.010792 C = 0.010165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.607114 B = 2593.875616 C = 2753.773600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.080 3.920 3 O -0.359 6.359 4 C 0.181 3.819 5 C -0.533 4.533 6 H 0.036 0.964 7 C 0.038 3.962 8 N -0.941 5.941 9 Si 0.911 3.089 10 H -0.285 1.285 11 H -0.338 1.338 12 H -0.175 1.175 13 C -0.117 4.117 14 C -0.135 4.135 15 C -0.557 4.557 16 S 2.405 3.595 17 O -0.929 6.929 18 O -0.996 6.996 19 C -0.605 4.605 20 C -0.104 4.104 21 H 0.069 0.931 22 H 0.037 0.963 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.017 0.983 26 H 0.261 0.739 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.155 0.845 35 H 0.073 0.927 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.728 7.424 -11.548 13.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.003 3.997 3 O -0.280 6.280 4 C 0.142 3.858 5 C -0.571 4.571 6 H 0.054 0.946 7 C -0.161 4.161 8 N -0.580 5.580 9 Si 0.741 3.259 10 H -0.212 1.212 11 H -0.270 1.270 12 H -0.097 1.097 13 C -0.155 4.155 14 C -0.173 4.173 15 C -0.688 4.688 16 S 2.590 3.410 17 O -0.927 6.927 18 O -0.993 6.993 19 C -0.735 4.735 20 C -0.142 4.142 21 H 0.088 0.912 22 H 0.056 0.944 23 H 0.095 0.905 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.173 0.827 35 H 0.092 0.908 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.583 7.264 -11.927 14.417 hybrid contribution 0.561 -0.306 1.366 1.508 sum -3.022 6.957 -10.560 13.002 Atomic orbital electron populations 1.21730 0.94499 1.01549 1.02084 1.21927 0.94316 0.85295 0.98116 1.87763 1.21487 1.25672 1.93037 1.19335 0.80088 0.94515 0.91873 1.21411 1.23246 1.21032 0.91400 0.94587 1.25626 0.98753 0.96363 0.95402 1.70114 1.41048 1.47824 0.99050 0.86609 0.80022 0.83179 0.76121 1.21231 1.27006 1.09704 1.22001 0.97800 0.92729 1.02968 1.20164 1.01695 1.01529 0.93916 1.28622 1.13251 1.18720 1.08181 1.08268 0.78536 0.79357 0.74811 1.93616 1.57281 1.65487 1.76271 1.93503 1.86003 1.84116 1.35682 1.30195 1.24008 1.12889 1.06389 1.21568 1.02836 0.98239 0.91595 0.91190 0.94419 0.90547 0.93929 0.96457 0.93051 0.91876 0.88575 0.88629 0.89952 0.83651 0.82895 0.83924 0.82682 0.90826 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 10.14 71.98 0.73 -4.40 16 2 C 0.08 3.30 4.24 71.98 0.31 3.60 16 3 O -0.36 -14.44 1.62 -125.26 -0.20 -14.65 16 4 C 0.18 7.18 0.27 -12.07 0.00 7.18 16 5 C -0.53 -27.57 7.04 25.60 0.18 -27.39 16 6 H 0.04 2.09 7.90 -2.91 -0.02 2.07 16 7 C 0.04 2.09 4.83 84.66 0.41 2.50 16 8 N -0.94 -57.26 13.96 21.45 0.30 -56.96 16 9 Si 0.91 43.18 23.52 68.60 1.61 44.80 16 10 H -0.29 -13.87 6.26 99.48 0.62 -13.25 16 11 H -0.34 -16.99 7.11 99.48 0.71 -16.28 16 12 H -0.17 -6.93 2.94 99.48 0.29 -6.64 16 13 C -0.12 -3.93 4.31 30.23 0.13 -3.80 16 14 C -0.14 -3.82 3.37 28.34 0.10 -3.72 16 15 C -0.56 -11.63 5.88 69.61 0.41 -11.22 16 16 S 2.41 63.35 5.16 -56.49 -0.29 63.06 16 17 O -0.93 -30.96 11.55 -118.16 -1.37 -32.33 16 18 O -1.00 -30.87 18.10 -127.37 -2.31 -33.17 16 19 C -0.61 -14.29 5.56 72.20 0.40 -13.89 16 20 C -0.10 -3.44 4.37 30.76 0.13 -3.30 16 21 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 22 H 0.04 1.42 7.30 -2.39 -0.02 1.40 16 23 H 0.08 2.68 6.96 -2.39 -0.02 2.66 16 24 H 0.04 1.66 6.22 -2.39 -0.01 1.64 16 25 H 0.02 0.82 6.40 -2.39 -0.02 0.81 16 26 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 27 H 0.06 2.42 6.12 -2.39 -0.01 2.40 16 28 H 0.10 2.50 6.34 -2.39 -0.02 2.48 16 29 H 0.10 3.20 4.14 -2.38 -0.01 3.19 16 30 H 0.08 2.06 8.12 -2.39 -0.02 2.04 16 31 H 0.15 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.14 2.83 8.14 -2.53 -0.02 2.81 16 34 H 0.16 2.60 7.07 -2.53 -0.02 2.58 16 35 H 0.07 2.48 7.86 -2.39 -0.02 2.46 16 36 H 0.06 2.09 5.96 -2.38 -0.01 2.07 16 Total: -1.00 -71.17 261.48 1.11 -70.05 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.58 Total: 13.63 kcal Atomic # 6 Polarization: -57.23 SS G_CDS: 2.79 Total: -54.44 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.30 Total: -56.96 kcal Atomic # 8 Polarization: -76.27 SS G_CDS: -3.87 Total: -80.14 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.61 Total: 44.80 kcal Atomic # 16 Polarization: 63.35 SS G_CDS: -0.29 Total: 63.06 kcal Total: -71.17 1.11 -70.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261358478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.851 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds