Wall clock time and date at job start Mon Mar 30 2020 04:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47019 * 2 1 4 4 H 1.08998 * 109.47193 * 305.17306 * 3 2 1 5 5 C 1.50700 * 109.47314 * 185.17198 * 3 2 1 6 6 H 1.07996 * 119.99799 * 245.66247 * 5 3 2 7 7 C 1.37877 * 119.99961 * 65.65515 * 5 3 2 8 8 N 1.31517 * 120.00060 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47255 * 60.00425 * 9 7 5 11 11 H 1.48505 * 109.47395 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47575 * 300.00271 * 9 7 5 13 13 S 1.81403 * 109.47021 * 65.17136 * 3 2 1 14 14 O 1.42102 * 108.57654 * 298.19823 * 13 3 2 15 15 O 1.42101 * 108.57641 * 69.22591 * 13 3 2 16 16 C 1.81398 * 101.91993 * 183.71273 * 13 3 2 17 17 H 1.09005 * 110.75286 * 57.73164 * 16 13 3 18 18 C 1.55306 * 110.84922 * 294.25890 * 16 13 3 19 19 C 1.54952 * 100.93866 * 207.67613 * 18 16 13 20 20 O 1.43644 * 105.13779 * 36.44724 * 19 18 16 21 21 C 1.43241 * 109.96872 * 335.57102 * 20 19 18 22 22 H 1.09001 * 109.83181 * 121.23086 * 21 20 19 23 23 C 1.53004 * 109.82714 * 242.19677 * 21 20 19 24 24 H 1.08999 * 109.47724 * 51.34619 * 1 2 3 25 25 H 1.08998 * 109.47321 * 291.34830 * 1 2 3 26 26 H 1.09000 * 109.46878 * 171.35136 * 1 2 3 27 27 H 1.08999 * 109.47338 * 120.00141 * 2 1 3 28 28 H 1.09006 * 109.46984 * 240.00631 * 2 1 3 29 29 H 0.97001 * 120.00154 * 179.97438 * 8 7 5 30 30 H 1.08995 * 111.12383 * 325.59504 * 18 16 13 31 31 H 1.08999 * 111.12122 * 89.71831 * 18 16 13 32 32 H 1.09008 * 110.30262 * 155.35957 * 19 18 16 33 33 H 1.09000 * 110.30947 * 277.42422 * 19 18 16 34 34 H 1.08998 * 109.47156 * 178.13281 * 23 21 20 35 35 H 1.09000 * 109.47137 * 298.13763 * 23 21 20 36 36 H 1.09005 * 109.46996 * 58.13582 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9824 -0.8400 5 6 3.5415 1.4445 -0.1281 6 1 4.1524 1.8049 0.6863 7 6 4.1353 0.9862 -1.2849 8 7 3.3913 0.5476 -2.2768 9 14 5.9965 0.9880 -1.4434 10 1 6.5850 0.1382 -0.3772 11 1 6.3807 0.4507 -2.7735 12 1 6.5038 2.3768 -1.3058 13 16 1.5644 2.2520 1.5522 14 8 0.1459 2.2770 1.6336 15 8 2.3102 1.6706 2.6129 16 6 2.1582 3.9457 1.2888 17 1 1.7071 4.3786 0.3958 18 6 3.7081 3.9801 1.1972 19 6 4.0006 5.4163 1.6999 20 8 3.0301 5.6577 2.7311 21 6 1.8836 4.8232 2.5289 22 1 1.7281 4.1904 3.4027 23 6 0.6465 5.6905 2.2874 24 1 -0.3634 0.6419 -0.8025 25 1 -0.3634 0.3741 0.9571 26 1 -0.3633 -1.0160 -0.1545 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.8091 0.2255 -3.0908 30 1 4.1570 3.2350 1.8540 31 1 4.0439 3.8471 0.1688 32 1 5.0094 5.4761 2.1083 33 1 3.8787 6.1334 0.8881 34 1 -0.2156 5.0500 2.1015 35 1 0.4581 6.3074 3.1661 36 1 0.8157 6.3321 1.4226 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300452742.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:10 Heat of formation + Delta-G solvation = -148.557558 kcal Electronic energy + Delta-G solvation = -19523.807521 eV Core-core repulsion = 16520.321627 eV Total energy + Delta-G solvation = -3003.485894 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51293 -37.87018 -37.03594 -36.65802 -33.82343 -33.48047 -32.50461 -29.54426 -27.27309 -25.44032 -23.17029 -23.01454 -21.93244 -19.75700 -19.03609 -18.24451 -17.43236 -17.35063 -16.54432 -16.19696 -15.95772 -15.35247 -14.84566 -14.81005 -14.63870 -14.03289 -13.86150 -13.55094 -13.52527 -13.24861 -13.03004 -12.91969 -12.81577 -12.70864 -12.52632 -12.35556 -12.18546 -12.02968 -11.95378 -11.73321 -11.54234 -11.22927 -10.63973 -10.57487 -10.39774 -8.20731 -6.37193 -0.67798 1.46139 1.49933 1.54906 2.03584 2.39515 2.60422 2.81567 3.06167 3.15233 3.49631 3.69184 3.87632 4.12412 4.21535 4.25548 4.27038 4.38454 4.52796 4.53985 4.68833 4.83149 4.86439 4.93651 5.01618 5.06583 5.09541 5.19894 5.22584 5.39393 5.61214 5.63651 5.90258 5.98350 6.68659 7.31721 8.86787 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.018863 B = 0.010381 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.002358 B = 2696.712756 C = 3779.984784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.109 4.109 3 C -0.373 4.373 4 H 0.092 0.908 5 C -0.538 4.538 6 H 0.087 0.913 7 C 0.040 3.960 8 N -0.900 5.900 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.251 1.251 13 S 2.399 3.601 14 O -0.978 6.978 15 O -0.984 6.984 16 C -0.596 4.596 17 H 0.165 0.835 18 C -0.129 4.129 19 C 0.052 3.948 20 O -0.387 6.387 21 C 0.101 3.899 22 H 0.066 0.934 23 C -0.168 4.168 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.267 0.733 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 8.002 2.834 8.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.149 4.149 3 C -0.488 4.488 4 H 0.110 0.890 5 C -0.576 4.576 6 H 0.105 0.895 7 C -0.164 4.164 8 N -0.537 5.537 9 Si 0.767 3.233 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.175 1.175 13 S 2.590 3.410 14 O -0.975 6.975 15 O -0.981 6.981 16 C -0.705 4.705 17 H 0.183 0.817 18 C -0.167 4.167 19 C -0.025 4.025 20 O -0.307 6.307 21 C 0.042 3.958 22 H 0.084 0.916 23 C -0.226 4.226 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.321 7.756 3.610 8.656 hybrid contribution 1.113 -0.340 -1.137 1.626 sum -0.208 7.416 2.473 7.820 Atomic orbital electron populations 1.22218 0.95723 1.02590 1.02633 1.21359 0.94554 0.96186 1.02823 1.27353 1.05255 1.03758 1.12426 0.89016 1.20968 0.88078 1.45911 1.02641 0.89489 1.25523 1.02026 0.93746 0.95062 1.69996 1.37012 1.40945 1.05725 0.85823 0.80430 0.79872 0.77136 1.20115 1.21276 1.17536 1.08575 0.74408 0.78337 0.79677 1.93431 1.29526 1.86612 1.87979 1.93426 1.73875 1.75813 1.54986 1.31694 1.08488 1.22001 1.08356 0.81720 1.23340 0.89059 0.98627 1.05679 1.23648 0.93188 0.94862 0.90779 1.88329 1.28461 1.62857 1.51048 1.22394 0.88725 0.91366 0.93271 0.91572 1.22275 0.95531 1.00641 1.04113 0.92223 0.92113 0.91289 0.93876 0.89502 0.92398 0.90092 0.86324 0.87640 0.89916 0.90442 0.90058 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.81 9.25 71.98 0.67 -6.15 16 2 C -0.11 -4.92 5.28 30.59 0.16 -4.76 16 3 C -0.37 -16.54 2.02 29.85 0.06 -16.48 16 4 H 0.09 4.07 8.13 -2.39 -0.02 4.05 16 5 C -0.54 -25.14 6.39 25.60 0.16 -24.97 16 6 H 0.09 3.90 5.02 -2.91 -0.01 3.88 16 7 C 0.04 1.92 5.30 84.65 0.45 2.37 16 8 N -0.90 -45.76 11.74 21.45 0.25 -45.50 16 9 Si 0.94 38.07 29.54 68.60 2.03 40.09 16 10 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.29 -11.66 7.11 99.48 0.71 -10.96 16 12 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 13 S 2.40 97.49 3.67 -56.49 -0.21 97.28 16 14 O -0.98 -41.12 15.39 -127.37 -1.96 -43.08 16 15 O -0.98 -45.96 17.16 -127.37 -2.19 -48.14 16 16 C -0.60 -19.48 2.92 31.85 0.09 -19.39 16 17 H 0.17 4.57 7.86 -2.38 -0.02 4.55 16 18 C -0.13 -4.11 4.57 32.05 0.15 -3.96 16 19 C 0.05 1.37 7.78 72.65 0.56 1.93 16 20 O -0.39 -11.96 11.02 -148.98 -1.64 -13.60 16 21 C 0.10 3.16 3.79 31.06 0.12 3.28 16 22 H 0.07 2.20 7.75 -2.39 -0.02 2.18 16 23 C -0.17 -4.27 9.44 71.98 0.68 -3.59 16 24 H 0.06 2.24 8.11 -2.39 -0.02 2.22 16 25 H 0.06 2.40 5.84 -2.39 -0.01 2.39 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.09 4.25 6.44 -2.38 -0.02 4.23 16 29 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 30 H 0.08 2.83 6.40 -2.39 -0.02 2.81 16 31 H 0.12 3.72 7.04 -2.39 -0.02 3.70 16 32 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -59.08 294.44 0.45 -58.63 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 1.06 Total: 26.05 kcal Atomic # 6 Polarization: -74.83 SS G_CDS: 3.10 Total: -71.73 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.25 Total: -45.50 kcal Atomic # 8 Polarization: -99.04 SS G_CDS: -5.79 Total: -104.82 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 16 Polarization: 97.49 SS G_CDS: -0.21 Total: 97.28 kcal Total: -59.08 0.45 -58.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300452742.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.927 kcal (2) G-P(sol) polarization free energy of solvation -59.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds