Wall clock time and date at job start Mon Mar 30 2020 04:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00256 * 2 1 4 4 H 1.48501 * 109.46857 * 269.99764 * 3 2 1 5 5 H 1.48503 * 109.47087 * 29.99467 * 3 2 1 6 6 H 1.48494 * 109.47355 * 149.99718 * 3 2 1 7 7 C 1.37878 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00050 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00133 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47458 * 179.97438 * 9 7 2 11 11 C 1.30633 * 120.00014 * 119.99904 * 10 9 7 12 12 N 1.37186 * 125.61142 * 0.02562 * 11 10 9 13 13 H 0.96994 * 125.90679 * 359.96243 * 12 11 10 14 14 C 1.39428 * 108.17881 * 179.97438 * 12 11 10 15 15 C 1.38743 * 132.73268 * 179.97438 * 14 12 11 16 16 C 1.38122 * 119.91151 * 180.02562 * 15 14 12 17 17 C 1.38399 * 120.25079 * 0.26256 * 16 15 14 18 18 N 1.48017 * 119.86898 * 179.74559 * 17 16 15 19 19 O 1.21802 * 119.99813 * 359.97438 * 18 17 16 20 20 O 1.21801 * 119.99756 * 179.97438 * 18 17 16 21 21 C 1.38125 * 120.25627 * 359.44545 * 17 16 15 22 22 C 1.38740 * 119.90171 * 0.58404 * 21 17 16 23 23 N 1.37182 * 125.60990 * 180.02562 * 11 10 9 24 24 H 0.96997 * 125.91540 * 0.03385 * 23 11 10 25 25 H 0.97003 * 119.99746 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47130 * 60.00068 * 9 7 2 27 27 H 1.08994 * 109.46929 * 300.00149 * 9 7 2 28 28 H 1.08001 * 120.03994 * 0.02933 * 15 14 12 29 29 H 1.08002 * 119.87067 * 179.97438 * 16 15 14 30 30 H 1.07989 * 120.04474 * 180.23736 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 4.7512 -3.0033 -0.9769 12 7 5.1522 -2.2615 -2.0591 13 1 4.9267 -1.3333 -2.2276 14 6 5.9397 -3.0729 -2.8749 15 6 6.5957 -2.8462 -4.0763 16 6 7.3186 -3.8631 -4.6688 17 6 7.3870 -5.1096 -4.0715 18 7 8.1595 -6.1949 -4.7168 19 8 8.7330 -5.9900 -5.7716 20 8 8.2217 -7.2927 -4.1929 21 6 6.7423 -5.3431 -2.8724 22 6 6.0132 -4.3280 -2.2701 23 7 5.2692 -4.2683 -1.0923 24 1 5.1402 -4.9954 -0.4634 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6802 0.8911 27 1 3.8752 -0.6806 -0.8888 28 1 6.5410 -1.8759 -4.5474 29 1 7.8286 -3.6860 -5.6043 30 1 6.8012 -6.3160 -2.4074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362662219.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:49 Heat of formation + Delta-G solvation = 82.293959 kcal Electronic energy + Delta-G solvation = -18337.848023 eV Core-core repulsion = 15137.681058 eV Total energy + Delta-G solvation = -3200.166965 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.085 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.38873 -41.82537 -37.90786 -36.58881 -34.71851 -33.93105 -32.47060 -30.83303 -29.97581 -27.63408 -25.87941 -23.45587 -23.04207 -22.22598 -20.60677 -19.48470 -18.67133 -18.14265 -17.55361 -16.95878 -16.76284 -16.10285 -15.55939 -15.13071 -14.60240 -14.51655 -14.20349 -13.64876 -12.97471 -12.63418 -12.34001 -12.02616 -11.59348 -11.50038 -11.26331 -11.20039 -11.18570 -10.82695 -10.57207 -9.81891 -9.49607 -9.07321 -9.00455 -8.69399 -7.18795 -6.24091 -4.24185 -0.21988 0.73039 1.30143 1.32688 2.46881 3.00466 3.02008 3.08746 3.10120 3.19552 3.20998 4.00724 4.22022 4.44020 4.55938 4.58352 4.92542 5.04579 5.17378 5.36388 5.47506 5.57100 5.71072 5.89976 6.30472 6.37193 6.67754 6.88938 7.06929 7.39970 7.47929 7.61666 8.23591 8.68941 8.86141 9.34823 10.88828 Molecular weight = 262.09amu Principal moments of inertia in cm(-1) A = 0.045718 B = 0.003943 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.309198 B = 7099.330451 C = 7433.683593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.178 3.822 10 N -0.559 5.559 11 C 0.549 3.451 12 N -0.659 5.659 13 H 0.438 0.562 14 C 0.170 3.830 15 C -0.127 4.127 16 C -0.045 4.045 17 C -0.054 4.054 18 N 0.041 4.959 19 O -0.170 6.170 20 O -0.172 6.172 21 C -0.059 4.059 22 C 0.113 3.887 23 N -0.628 5.628 24 H 0.440 0.560 25 H 0.267 0.733 26 H 0.041 0.959 27 H -0.018 1.018 28 H 0.151 0.849 29 H 0.157 0.843 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.484 -5.960 -8.441 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.098 0.902 9 C 0.050 3.950 10 N -0.291 5.291 11 C 0.184 3.816 12 N -0.292 5.292 13 H 0.281 0.719 14 C 0.059 3.941 15 C -0.152 4.152 16 C -0.066 4.066 17 C -0.140 4.140 18 N 0.557 4.443 19 O -0.384 6.384 20 O -0.385 6.385 21 C -0.084 4.084 22 C 0.007 3.993 23 N -0.260 5.260 24 H 0.283 0.717 25 H 0.077 0.923 26 H 0.059 0.941 27 H -0.001 1.001 28 H 0.168 0.832 29 H 0.174 0.826 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 14.375 -5.440 -7.123 16.941 hybrid contribution 0.419 1.257 -0.516 1.422 sum 14.795 -4.184 -7.638 17.168 Atomic orbital electron populations 1.69882 1.06147 1.27161 1.49919 1.24924 0.94822 0.98878 0.94572 0.86862 0.80455 0.83895 0.78580 1.20134 1.20658 1.19083 1.20973 0.88086 0.95034 1.51420 0.90237 1.19913 0.97182 0.82764 0.95141 1.72471 1.16080 1.20678 1.19885 1.19467 0.93244 0.83079 0.85810 1.43436 1.49293 1.14882 1.21547 0.71868 1.18568 0.92990 0.89740 0.92755 1.19973 1.00529 1.00768 0.93883 1.20569 0.96782 0.89181 1.00097 1.20290 1.06667 0.88951 0.98138 1.43437 0.99017 1.01765 1.00109 1.94520 1.45299 1.88380 1.10201 1.94531 1.67078 1.10630 1.66307 1.19438 0.96070 0.99519 0.93363 1.17491 0.98514 0.93803 0.89499 1.41352 1.50589 1.11719 1.22338 0.71746 0.92322 0.94147 1.00066 0.83179 0.82558 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.15 27.47 -169.99 -4.67 15.48 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.52 -14.50 9.94 -34.44 -0.34 -14.84 16 8 H 0.08 2.50 8.06 -52.48 -0.42 2.07 16 9 C 0.18 4.16 5.21 -5.20 -0.03 4.13 16 10 N -0.56 -11.80 10.62 -63.06 -0.67 -12.47 16 11 C 0.55 9.20 8.77 -320.58 -2.81 6.39 16 12 N -0.66 -9.28 6.00 -11.27 -0.07 -9.35 16 13 H 0.44 5.84 7.25 -40.82 -0.30 5.54 16 14 C 0.17 1.97 7.22 -83.74 -0.60 1.37 16 15 C -0.13 -1.12 10.07 -39.44 -0.40 -1.52 16 16 C -0.04 -0.40 9.54 -39.56 -0.38 -0.78 16 17 C -0.05 -0.58 6.85 -79.93 -0.55 -1.13 16 18 N 0.04 0.51 4.45 33.97 0.15 0.66 16 19 O -0.17 -2.23 18.43 -29.46 -0.54 -2.77 16 20 O -0.17 -2.31 18.44 -29.46 -0.54 -2.85 16 21 C -0.06 -0.61 9.57 -39.44 -0.38 -0.98 16 22 C 0.11 1.31 7.22 -83.74 -0.60 0.70 16 23 N -0.63 -8.16 6.27 -11.27 -0.07 -8.23 16 24 H 0.44 4.72 8.96 -40.82 -0.37 4.36 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 27 H -0.02 -0.39 5.48 -51.93 -0.28 -0.67 16 28 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.16 1.10 7.60 -52.49 -0.40 0.70 16 30 H 0.16 1.37 7.60 -52.49 -0.40 0.97 16 LS Contribution 274.78 15.07 4.14 4.14 Total: -1.00 -32.32 274.78 -9.82 -42.14 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -2.13 Total: 3.89 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -6.19 Total: -4.77 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.12 Total: -55.26 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -1.09 Total: -5.62 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.32 -9.82 -42.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362662219.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.434 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds