Wall clock time and date at job start Mon Mar 30 2020 04:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00256 * 2 1 4 4 H 1.48501 * 109.46857 * 269.99764 * 3 2 1 5 5 H 1.48503 * 109.47087 * 29.99467 * 3 2 1 6 6 H 1.48494 * 109.47355 * 149.99718 * 3 2 1 7 7 C 1.37878 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00050 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00133 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47458 * 179.97438 * 9 7 2 11 11 C 1.30633 * 120.00014 * 119.99904 * 10 9 7 12 12 N 1.37186 * 125.61142 * 0.02562 * 11 10 9 13 13 H 0.96994 * 125.90679 * 359.96243 * 12 11 10 14 14 C 1.39428 * 108.17881 * 179.97438 * 12 11 10 15 15 C 1.38743 * 132.73268 * 179.97438 * 14 12 11 16 16 C 1.38122 * 119.91151 * 180.02562 * 15 14 12 17 17 C 1.38399 * 120.25079 * 0.26256 * 16 15 14 18 18 N 1.48017 * 119.86898 * 179.74559 * 17 16 15 19 19 O 1.21802 * 119.99813 * 359.97438 * 18 17 16 20 20 O 1.21801 * 119.99756 * 179.97438 * 18 17 16 21 21 C 1.38125 * 120.25627 * 359.44545 * 17 16 15 22 22 C 1.38740 * 119.90171 * 0.58404 * 21 17 16 23 23 N 1.37182 * 125.60990 * 180.02562 * 11 10 9 24 24 H 0.96997 * 125.91540 * 0.03385 * 23 11 10 25 25 H 0.97003 * 119.99746 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47130 * 60.00068 * 9 7 2 27 27 H 1.08994 * 109.46929 * 300.00149 * 9 7 2 28 28 H 1.08001 * 120.03994 * 0.02933 * 15 14 12 29 29 H 1.08002 * 119.87067 * 179.97438 * 16 15 14 30 30 H 1.07989 * 120.04474 * 180.23736 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 4.7512 -3.0033 -0.9769 12 7 5.1522 -2.2615 -2.0591 13 1 4.9267 -1.3333 -2.2276 14 6 5.9397 -3.0729 -2.8749 15 6 6.5957 -2.8462 -4.0763 16 6 7.3186 -3.8631 -4.6688 17 6 7.3870 -5.1096 -4.0715 18 7 8.1595 -6.1949 -4.7168 19 8 8.7330 -5.9900 -5.7716 20 8 8.2217 -7.2927 -4.1929 21 6 6.7423 -5.3431 -2.8724 22 6 6.0132 -4.3280 -2.2701 23 7 5.2692 -4.2683 -1.0923 24 1 5.1402 -4.9954 -0.4634 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6802 0.8911 27 1 3.8752 -0.6806 -0.8888 28 1 6.5410 -1.8759 -4.5474 29 1 7.8286 -3.6860 -5.6043 30 1 6.8012 -6.3160 -2.4074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362662219.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:49 Heat of formation + Delta-G solvation = 61.073918 kcal Electronic energy + Delta-G solvation = -18338.768193 eV Core-core repulsion = 15137.681058 eV Total energy + Delta-G solvation = -3201.087135 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.085 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.37762 -42.84967 -38.90819 -37.57968 -36.19710 -35.05754 -34.35407 -31.75272 -31.19747 -29.26418 -26.88851 -24.66304 -24.37138 -23.25947 -21.96299 -20.44733 -19.67232 -19.27899 -18.86198 -18.50907 -17.88546 -17.21622 -16.69871 -16.37927 -16.02258 -15.67263 -15.32211 -14.76491 -14.48066 -14.29465 -13.60073 -13.01705 -12.86342 -12.60082 -12.57609 -12.50714 -12.22959 -12.21952 -12.20389 -11.79074 -10.95341 -10.79376 -10.38298 -9.93079 -8.46805 -8.35387 -6.43451 -1.17585 -0.08995 0.34719 0.39428 1.30068 1.35956 1.36926 1.46776 1.70806 1.98080 2.23928 2.29182 2.96332 3.16352 3.62028 3.65128 3.72138 3.98831 4.18258 4.34495 4.57128 4.59747 4.76324 4.84495 4.99115 5.09035 5.37067 5.43908 5.64906 6.04469 6.09696 6.35146 6.58887 6.61973 7.15903 7.35230 8.81076 Molecular weight = 262.09amu Principal moments of inertia in cm(-1) A = 0.045718 B = 0.003943 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.309198 B = 7099.330451 C = 7433.683593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.247 1.247 7 C -0.531 4.531 8 H 0.022 0.978 9 C 0.192 3.808 10 N -0.623 5.623 11 C 0.566 3.434 12 N -0.659 5.659 13 H 0.441 0.559 14 C 0.154 3.846 15 C -0.104 4.104 16 C -0.033 4.033 17 C -0.060 4.060 18 N 0.040 4.960 19 O -0.169 6.169 20 O -0.196 6.196 21 C -0.046 4.046 22 C 0.098 3.902 23 N -0.620 5.620 24 H 0.448 0.552 25 H 0.270 0.730 26 H 0.032 0.968 27 H 0.005 0.995 28 H 0.186 0.814 29 H 0.183 0.817 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.240 -4.779 -10.439 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.778 3.222 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.171 1.171 7 C -0.570 4.570 8 H 0.040 0.960 9 C 0.063 3.937 10 N -0.360 5.360 11 C 0.201 3.799 12 N -0.292 5.292 13 H 0.285 0.715 14 C 0.045 3.955 15 C -0.127 4.127 16 C -0.054 4.054 17 C -0.146 4.146 18 N 0.554 4.446 19 O -0.384 6.384 20 O -0.405 6.405 21 C -0.070 4.070 22 C -0.007 4.007 23 N -0.252 5.252 24 H 0.292 0.708 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.203 0.797 29 H 0.201 0.799 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 17.203 -4.361 -9.170 19.977 hybrid contribution -0.329 0.682 -0.086 0.761 sum 16.875 -3.679 -9.256 19.595 Atomic orbital electron populations 1.70066 1.08476 1.28577 1.51565 1.26009 0.95741 1.03633 0.93663 0.85587 0.79287 0.77404 0.79912 1.17710 1.20665 1.17074 1.21249 0.91107 0.93089 1.51522 0.95952 1.19521 0.93710 0.84948 0.95554 1.72366 1.20790 1.19705 1.23100 1.19536 0.91117 0.84093 0.85188 1.43334 1.49519 1.15126 1.21255 0.71488 1.18864 0.93629 0.89202 0.93757 1.20351 0.98149 1.02047 0.92152 1.20928 0.95849 0.88018 1.00594 1.20486 1.06639 0.89126 0.98345 1.43659 0.98944 1.01973 1.00024 1.94509 1.45235 1.88357 1.10337 1.94542 1.67959 1.11400 1.66592 1.19526 0.94764 0.99715 0.92994 1.17565 0.99374 0.94510 0.89245 1.41364 1.50113 1.10714 1.23052 0.70833 0.92091 0.95044 0.97688 0.79698 0.79932 0.81473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 2 C 0.01 0.42 5.47 84.65 0.46 0.88 16 3 Si 0.96 41.36 27.47 68.60 1.88 43.25 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.25 -9.87 6.54 99.48 0.65 -9.22 16 7 C -0.53 -31.10 9.94 25.60 0.25 -30.84 16 8 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 9 C 0.19 9.04 5.21 85.63 0.45 9.48 16 10 N -0.62 -26.86 10.62 -353.43 -3.75 -30.61 16 11 C 0.57 18.69 8.77 260.71 2.29 20.97 16 12 N -0.66 -17.27 6.00 -189.56 -1.14 -18.40 16 13 H 0.44 10.73 7.25 -92.71 -0.67 10.06 16 14 C 0.15 3.11 7.22 38.36 0.28 3.39 16 15 C -0.10 -1.35 10.07 22.36 0.23 -1.13 16 16 C -0.03 -0.43 9.54 22.28 0.21 -0.22 16 17 C -0.06 -1.09 6.85 36.39 0.25 -0.84 16 18 N 0.04 0.92 4.45 -46.43 -0.21 0.71 16 19 O -0.17 -3.93 18.43 18.88 0.35 -3.58 16 20 O -0.20 -4.97 18.44 18.88 0.35 -4.62 16 21 C -0.05 -0.83 9.57 22.36 0.21 -0.61 16 22 C 0.10 2.05 7.22 38.36 0.28 2.33 16 23 N -0.62 -15.55 6.27 -189.55 -1.19 -16.73 16 24 H 0.45 9.43 8.96 -92.71 -0.83 8.60 16 25 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 26 H 0.03 1.51 7.20 -2.39 -0.02 1.49 16 27 H 0.01 0.22 5.48 -2.39 -0.01 0.21 16 28 H 0.19 1.20 8.06 -2.91 -0.02 1.17 16 29 H 0.18 1.58 7.60 -2.91 -0.02 1.56 16 30 H 0.17 2.60 7.60 -2.92 -0.02 2.57 16 Total: -1.00 -74.15 274.78 1.17 -72.98 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -0.33 Total: 11.95 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 4.90 Total: 3.40 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -5.99 Total: -123.38 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.70 Total: -8.20 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.88 Total: 43.25 kcal Total: -74.15 1.17 -72.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362662219.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.055 kcal (2) G-P(sol) polarization free energy of solvation -74.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds