Wall clock time and date at job start Mon Mar 30 2020 04:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99527 * 2 1 4 4 H 1.48501 * 109.47084 * 270.00274 * 3 2 1 5 5 H 1.48496 * 109.47520 * 30.00637 * 3 2 1 6 6 H 1.48505 * 109.46890 * 150.00681 * 3 2 1 7 7 C 1.37867 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00485 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00124 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47216 * 180.02562 * 9 7 2 11 11 C 1.42895 * 113.99654 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46751 * 179.97438 * 11 10 9 13 13 S 1.81400 * 109.46902 * 180.02562 * 12 11 10 14 14 O 1.42095 * 109.47202 * 296.39091 * 13 12 11 15 15 C 1.81399 * 102.99767 * 180.02562 * 13 12 11 16 16 C 1.53179 * 109.54478 * 304.82152 * 15 13 12 17 17 C 1.53101 * 109.15898 * 183.24182 * 16 15 13 18 18 O 1.42905 * 109.48696 * 57.47592 * 17 16 15 19 19 C 1.42904 * 114.09782 * 298.88601 * 18 17 16 20 20 C 1.53099 * 109.41065 * 61.15821 * 19 18 17 21 21 H 0.96998 * 120.00254 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47150 * 60.00271 * 9 7 2 23 23 H 1.08995 * 109.46660 * 299.99989 * 9 7 2 24 24 H 1.09007 * 109.46806 * 60.00570 * 11 10 9 25 25 H 1.08992 * 109.47575 * 300.00275 * 11 10 9 26 26 H 1.08999 * 109.47054 * 60.00145 * 12 11 10 27 27 H 1.09005 * 109.47135 * 300.00351 * 12 11 10 28 28 H 1.08999 * 109.54511 * 64.99922 * 15 13 12 29 29 H 1.08996 * 109.52232 * 303.05806 * 16 15 13 30 30 H 1.08999 * 109.52226 * 63.24849 * 16 15 13 31 31 H 1.09002 * 109.40911 * 297.49673 * 17 16 15 32 32 H 1.08996 * 109.49863 * 177.51201 * 17 16 15 33 33 H 1.08997 * 109.48123 * 301.17792 * 19 18 17 34 34 H 1.08998 * 109.49387 * 181.14551 * 19 18 17 35 35 H 1.09005 * 109.51804 * 182.48297 * 20 19 18 36 36 H 1.09004 * 109.57057 * 62.33193 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9561 -0.0006 13 16 1.8681 -7.5938 -0.0007 14 8 1.1273 -7.7656 1.1997 15 6 3.2884 -8.7223 -0.0007 16 6 4.2024 -8.3957 -1.1858 17 6 5.3542 -9.4035 -1.2247 18 8 4.8257 -10.7282 -1.3152 19 6 4.0026 -11.1048 -0.2094 20 6 2.7953 -10.1666 -0.1310 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6248 -2.5570 0.8897 24 1 0.9448 -4.9826 -0.8898 25 1 0.9453 -4.9822 0.8902 26 1 3.2690 -5.8490 0.8889 27 1 3.2678 -5.8491 -0.8911 28 1 3.8440 -8.6092 0.9302 29 1 3.6331 -8.4590 -2.1131 30 1 4.6020 -7.3881 -1.0707 31 1 5.9478 -9.3104 -0.3153 32 1 5.9837 -9.2033 -2.0917 33 1 4.5785 -11.0339 0.7132 34 1 3.6581 -12.1300 -0.3450 35 1 2.1894 -10.4245 0.7377 36 1 2.1957 -10.2667 -1.0359 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385305044.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:13 Heat of formation + Delta-G solvation = -144.751601 kcal Electronic energy + Delta-G solvation = -17481.186138 eV Core-core repulsion = 14477.865282 eV Total energy + Delta-G solvation = -3003.320855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.44186 -36.86048 -35.76791 -34.01972 -32.88804 -31.61535 -30.80102 -27.06474 -25.57083 -24.02713 -22.63373 -22.20009 -20.74733 -17.64419 -16.79395 -16.44922 -16.32535 -15.87187 -15.64257 -15.13664 -15.10196 -14.59479 -14.47623 -14.14037 -13.71044 -13.38002 -13.17122 -12.64746 -12.18210 -12.00483 -11.98201 -11.68692 -11.23127 -11.07646 -10.97554 -10.82132 -10.75881 -10.70748 -10.38192 -10.09900 -9.62603 -9.15203 -8.89473 -8.29004 -8.23696 -6.14069 -4.16529 1.32923 2.49986 3.28162 3.33163 3.38464 3.57453 3.64186 4.30001 4.32728 4.36906 4.66409 4.77846 4.87066 4.90179 5.09647 5.14062 5.17386 5.22231 5.35236 5.35279 5.42343 5.57610 5.61961 5.67631 5.77385 5.83620 6.06084 6.17565 6.86773 7.04928 7.37669 7.75146 8.10084 8.50121 8.95865 9.48394 10.97430 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.043046 B = 0.003387 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.309349 B = 8265.791084 C = 8774.574750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.193 3.807 10 O -0.393 6.393 11 C 0.084 3.916 12 C -0.441 4.441 13 S 1.250 4.750 14 O -0.844 6.844 15 C -0.417 4.417 16 C -0.133 4.133 17 C 0.063 3.937 18 O -0.382 6.382 19 C 0.066 3.934 20 C -0.130 4.130 21 H 0.265 0.735 22 H 0.009 0.991 23 H 0.006 0.994 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.090 0.910 27 H 0.124 0.876 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.853 -21.267 -5.133 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.118 3.882 10 O -0.313 6.313 11 C 0.005 3.995 12 C -0.578 4.578 13 S 1.449 4.551 14 O -0.840 6.840 15 C -0.533 4.533 16 C -0.172 4.172 17 C -0.014 4.014 18 O -0.300 6.300 19 C -0.012 4.012 20 C -0.169 4.169 21 H 0.074 0.926 22 H 0.027 0.973 23 H 0.024 0.976 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.109 0.891 27 H 0.142 0.858 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.945 -21.441 -5.237 22.857 hybrid contribution 1.372 1.478 2.229 3.005 sum 7.317 -19.963 -3.008 21.473 Atomic orbital electron populations 1.69960 1.06113 1.27267 1.50298 1.24957 0.95005 0.99474 0.95052 0.86314 0.79628 0.82145 0.78268 1.20359 1.21028 1.19662 1.21044 0.94063 0.89306 1.51167 0.91537 1.20266 0.88823 0.83430 0.95662 1.87878 1.35569 1.12640 1.95230 1.21678 0.92781 0.85177 0.99878 1.27735 1.08555 1.13139 1.08357 1.70616 0.86467 0.85906 1.12133 1.93113 1.56848 1.82767 1.51251 1.27579 1.14415 1.07723 1.03629 1.21965 0.97277 1.00469 0.97459 1.22577 0.94677 0.82064 1.02131 1.87928 1.66616 1.31027 1.44463 1.22526 0.90760 0.98255 0.89614 1.21841 0.99044 0.92230 1.03737 0.92559 0.97313 0.97605 0.93270 0.94099 0.89122 0.85780 0.89143 0.89135 0.89736 0.93409 0.88337 0.93391 0.88533 0.90440 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -15.38 9.43 -34.44 -0.32 -15.71 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.36 5.69 36.01 0.20 5.57 16 10 O -0.39 -9.64 10.33 -35.23 -0.36 -10.00 16 11 C 0.08 1.57 5.95 37.16 0.22 1.79 16 12 C -0.44 -6.10 5.71 37.16 0.21 -5.89 16 13 S 1.25 13.70 12.67 -107.50 -1.36 12.34 16 14 O -0.84 -14.70 18.14 -35.23 -0.64 -15.34 16 15 C -0.42 -3.72 2.80 -26.55 -0.07 -3.80 16 16 C -0.13 -0.96 5.09 -26.59 -0.14 -1.09 16 17 C 0.06 0.48 6.84 37.21 0.25 0.74 16 18 O -0.38 -3.53 10.77 -35.23 -0.38 -3.91 16 19 C 0.07 0.52 6.84 37.21 0.25 0.77 16 20 C -0.13 -1.04 5.43 -26.59 -0.14 -1.18 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 24 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.12 1.39 6.99 -51.92 -0.36 1.03 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.57 6.72 -51.93 -0.35 0.22 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 310.97 15.07 4.69 4.69 Total: -1.00 -37.23 310.97 -7.72 -44.96 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -5.75 Total: -6.06 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 0.37 Total: -17.26 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -1.38 Total: -29.26 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 13.70 SS G_CDS: -1.36 Total: 12.34 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -37.23 -7.72 -44.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385305044.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.794 kcal (2) G-P(sol) polarization free energy of solvation -37.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds