Wall clock time and date at job start Mon Mar 30 2020 04:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99527 * 2 1 4 4 H 1.48501 * 109.47084 * 270.00274 * 3 2 1 5 5 H 1.48496 * 109.47520 * 30.00637 * 3 2 1 6 6 H 1.48505 * 109.46890 * 150.00681 * 3 2 1 7 7 C 1.37867 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00485 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00124 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47216 * 180.02562 * 9 7 2 11 11 C 1.42895 * 113.99654 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46751 * 179.97438 * 11 10 9 13 13 S 1.81400 * 109.46902 * 180.02562 * 12 11 10 14 14 O 1.42095 * 109.47202 * 296.39091 * 13 12 11 15 15 C 1.81399 * 102.99767 * 180.02562 * 13 12 11 16 16 C 1.53179 * 109.54478 * 304.82152 * 15 13 12 17 17 C 1.53101 * 109.15898 * 183.24182 * 16 15 13 18 18 O 1.42905 * 109.48696 * 57.47592 * 17 16 15 19 19 C 1.42904 * 114.09782 * 298.88601 * 18 17 16 20 20 C 1.53099 * 109.41065 * 61.15821 * 19 18 17 21 21 H 0.96998 * 120.00254 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47150 * 60.00271 * 9 7 2 23 23 H 1.08995 * 109.46660 * 299.99989 * 9 7 2 24 24 H 1.09007 * 109.46806 * 60.00570 * 11 10 9 25 25 H 1.08992 * 109.47575 * 300.00275 * 11 10 9 26 26 H 1.08999 * 109.47054 * 60.00145 * 12 11 10 27 27 H 1.09005 * 109.47135 * 300.00351 * 12 11 10 28 28 H 1.08999 * 109.54511 * 64.99922 * 15 13 12 29 29 H 1.08996 * 109.52232 * 303.05806 * 16 15 13 30 30 H 1.08999 * 109.52226 * 63.24849 * 16 15 13 31 31 H 1.09002 * 109.40911 * 297.49673 * 17 16 15 32 32 H 1.08996 * 109.49863 * 177.51201 * 17 16 15 33 33 H 1.08997 * 109.48123 * 301.17792 * 19 18 17 34 34 H 1.08998 * 109.49387 * 181.14551 * 19 18 17 35 35 H 1.09005 * 109.51804 * 182.48297 * 20 19 18 36 36 H 1.09004 * 109.57057 * 62.33193 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9561 -0.0006 13 16 1.8681 -7.5938 -0.0007 14 8 1.1273 -7.7656 1.1997 15 6 3.2884 -8.7223 -0.0007 16 6 4.2024 -8.3957 -1.1858 17 6 5.3542 -9.4035 -1.2247 18 8 4.8257 -10.7282 -1.3152 19 6 4.0026 -11.1048 -0.2094 20 6 2.7953 -10.1666 -0.1310 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6248 -2.5570 0.8897 24 1 0.9448 -4.9826 -0.8898 25 1 0.9453 -4.9822 0.8902 26 1 3.2690 -5.8490 0.8889 27 1 3.2678 -5.8491 -0.8911 28 1 3.8440 -8.6092 0.9302 29 1 3.6331 -8.4590 -2.1131 30 1 4.6020 -7.3881 -1.0707 31 1 5.9478 -9.3104 -0.3153 32 1 5.9837 -9.2033 -2.0917 33 1 4.5785 -11.0339 0.7132 34 1 3.6581 -12.1300 -0.3450 35 1 2.1894 -10.4245 0.7377 36 1 2.1957 -10.2667 -1.0359 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385305044.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:13 Heat of formation + Delta-G solvation = -173.305962 kcal Electronic energy + Delta-G solvation = -17482.424348 eV Core-core repulsion = 14477.865282 eV Total energy + Delta-G solvation = -3004.559065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.107 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.07220 -38.72999 -36.99220 -35.04980 -34.70595 -32.66689 -31.87120 -29.19472 -26.28252 -24.87578 -24.50666 -23.68027 -21.42181 -18.75463 -18.53887 -17.83454 -17.23471 -17.08437 -16.92473 -16.48092 -16.13106 -15.84582 -15.61017 -15.25781 -14.98084 -14.66573 -14.53313 -13.90824 -13.49116 -13.25032 -12.96612 -12.87484 -12.71633 -12.52127 -12.41891 -12.23139 -12.05604 -11.78697 -11.66435 -11.35692 -11.11058 -10.92295 -10.42508 -10.33103 -9.30348 -8.35276 -6.49006 0.35155 1.39059 1.42339 1.53890 1.54881 2.32798 2.63813 2.98394 3.00578 3.24652 3.61032 3.68028 3.85835 4.02567 4.06135 4.15859 4.32271 4.33851 4.53648 4.54999 4.64909 4.69857 4.73649 4.81326 4.84226 4.96836 5.05839 5.10820 5.11317 5.26508 5.50837 5.90224 6.27295 6.45040 6.74269 7.23016 8.77149 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.043046 B = 0.003387 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.309349 B = 8265.791084 C = 8774.574750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.064 0.936 9 C 0.204 3.796 10 O -0.407 6.407 11 C 0.067 3.933 12 C -0.440 4.440 13 S 1.309 4.691 14 O -0.911 6.911 15 C -0.407 4.407 16 C -0.136 4.136 17 C 0.058 3.942 18 O -0.395 6.395 19 C 0.065 3.935 20 C -0.134 4.134 21 H 0.272 0.728 22 H -0.001 1.001 23 H -0.021 1.021 24 H 0.078 0.922 25 H 0.019 0.981 26 H 0.074 0.926 27 H 0.157 0.843 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.116 0.884 33 H 0.044 0.956 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 -21.494 -6.631 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.082 0.918 9 C 0.129 3.871 10 O -0.328 6.328 11 C -0.010 4.010 12 C -0.576 4.576 13 S 1.510 4.490 14 O -0.906 6.906 15 C -0.526 4.526 16 C -0.174 4.174 17 C -0.019 4.019 18 O -0.314 6.314 19 C -0.013 4.013 20 C -0.173 4.173 21 H 0.081 0.919 22 H 0.017 0.983 23 H -0.003 1.003 24 H 0.096 0.904 25 H 0.037 0.963 26 H 0.093 0.907 27 H 0.175 0.825 28 H 0.097 0.903 29 H 0.133 0.867 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.062 0.938 34 H 0.132 0.868 35 H 0.087 0.913 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.273 -21.665 -6.731 23.824 hybrid contribution 0.981 1.380 2.683 3.172 sum 8.254 -20.285 -4.049 22.271 Atomic orbital electron populations 1.70069 1.07827 1.28833 1.50160 1.26009 0.96012 1.03530 0.93719 0.85132 0.78185 0.76683 0.79089 1.18734 1.20004 1.19024 1.21393 0.94200 0.90737 1.52775 0.91825 1.19924 0.88755 0.84623 0.93832 1.87825 1.35553 1.14121 1.95257 1.22059 0.94811 0.83909 1.00247 1.27820 1.07412 1.13124 1.09228 1.69884 0.85966 0.83759 1.09353 1.92995 1.60517 1.83493 1.53620 1.27470 1.13188 1.07565 1.04341 1.22095 0.97109 1.00824 0.97398 1.22721 0.94865 0.81514 1.02841 1.87916 1.66807 1.31807 1.44861 1.22612 0.90335 0.99050 0.89283 1.21942 0.99518 0.91322 1.04513 0.91894 0.98284 1.00340 0.90416 0.96273 0.90692 0.82521 0.90349 0.86660 0.88954 0.93835 0.86590 0.93803 0.86804 0.91264 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.29 21.44 0.28 -55.98 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.99 44.33 29.54 68.60 2.03 46.35 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.55 -33.40 9.43 25.60 0.24 -33.15 16 8 H 0.06 3.77 7.81 -2.91 -0.02 3.75 16 9 C 0.20 11.72 5.69 71.24 0.41 12.13 16 10 O -0.41 -20.37 10.33 -148.98 -1.54 -21.91 16 11 C 0.07 2.56 5.95 71.98 0.43 2.99 16 12 C -0.44 -11.84 5.71 71.98 0.41 -11.43 16 13 S 1.31 27.46 12.67 -56.49 -0.72 26.74 16 14 O -0.91 -32.19 18.14 -148.98 -2.70 -34.89 16 15 C -0.41 -6.55 2.80 30.71 0.09 -6.47 16 16 C -0.14 -1.55 5.09 30.69 0.16 -1.40 16 17 C 0.06 0.74 6.84 72.02 0.49 1.23 16 18 O -0.39 -6.33 10.77 -148.98 -1.60 -7.93 16 19 C 0.07 0.89 6.84 72.02 0.49 1.38 16 20 C -0.13 -1.89 5.43 30.69 0.17 -1.72 16 21 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 22 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 23 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 24 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 25 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.16 3.12 6.99 -2.39 -0.02 3.10 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.95 6.72 -2.39 -0.02 0.93 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.11 1.05 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -81.79 310.97 0.13 -81.65 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: 1.04 Total: 1.60 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 3.34 Total: -35.62 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.28 Total: -55.98 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -5.84 Total: -64.74 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 27.46 SS G_CDS: -0.72 Total: 26.74 kcal Total: -81.79 0.13 -81.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385305044.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.654 kcal (2) G-P(sol) polarization free energy of solvation -81.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds