Wall clock time and date at job start Mon Mar 30 2020 04:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46227 * 124.85130 * 2 1 4 4 N 1.46798 * 108.05285 * 179.97438 * 3 2 1 5 5 S 1.65600 * 127.02710 * 180.02562 * 4 3 2 6 6 O 1.42099 * 104.27496 * 206.07223 * 5 4 3 7 7 O 1.42093 * 104.27892 * 333.92900 * 5 4 3 8 8 C 1.81400 * 104.44987 * 90.00428 * 5 4 3 9 9 C 1.52997 * 109.47323 * 180.02562 * 8 5 4 10 10 C 1.50699 * 109.47281 * 180.02562 * 9 8 5 11 11 H 1.08007 * 119.99853 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00359 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00734 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 119.99861 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47072 * 90.00194 * 14 12 10 16 16 H 1.48501 * 109.47265 * 210.00242 * 14 12 10 17 17 H 1.48500 * 109.46843 * 330.00119 * 14 12 10 18 18 C 1.46988 * 105.93827 * 0.02562 * 4 3 2 19 19 C 1.34304 * 124.85533 * 179.69790 * 2 1 3 20 20 O 1.21276 * 125.42189 * 359.97438 * 19 2 1 21 21 H 1.09001 * 109.47060 * 90.00443 * 1 2 3 22 22 H 1.09004 * 109.47073 * 209.99932 * 1 2 3 23 23 H 1.09000 * 109.47212 * 330.00015 * 1 2 3 24 24 H 1.08997 * 109.75096 * 299.65677 * 3 2 1 25 25 H 1.09006 * 109.75314 * 60.34914 * 3 2 1 26 26 H 1.09011 * 109.46670 * 299.99618 * 8 5 4 27 27 H 1.08996 * 109.47545 * 59.99159 * 8 5 4 28 28 H 1.09003 * 109.46452 * 299.99483 * 9 8 5 29 29 H 1.08993 * 109.47312 * 59.99694 * 9 8 5 30 30 H 0.97001 * 120.00517 * 179.97438 * 13 12 10 31 31 H 1.08996 * 110.03805 * 119.28111 * 18 4 3 32 32 H 1.09005 * 110.03434 * 240.67046 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3007 1.2000 0.0000 4 7 3.7060 0.7757 0.0006 5 16 5.0428 1.7532 0.0015 6 8 6.0560 0.9616 -0.6034 7 8 4.5959 2.9586 -0.6037 8 6 5.4074 2.0199 1.7583 9 6 6.6372 2.9200 1.8930 10 6 6.9405 3.1411 3.3525 11 1 6.3179 2.6855 4.1085 12 6 8.0126 3.9249 3.7229 13 7 8.2770 4.1184 4.9966 14 14 9.0897 4.7123 2.4155 15 1 8.5489 6.0512 2.0690 16 1 10.4734 4.8567 2.9350 17 1 9.1032 3.8549 1.2031 18 6 3.6839 -0.6940 0.0004 19 6 2.2326 -1.1021 0.0058 20 8 1.8233 -2.2437 0.0123 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 2.0946 1.7923 -0.8915 25 1 2.0947 1.7923 0.8916 26 1 4.5533 2.4982 2.2380 27 1 5.6038 1.0613 2.2383 28 1 7.4914 2.4422 1.4132 29 1 6.4402 3.8786 1.4132 30 1 9.0315 4.6695 5.2571 31 1 4.1795 -1.0748 -0.8926 32 1 4.1795 -1.0750 0.8934 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408136915.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:21 Heat of formation + Delta-G solvation = -85.295315 kcal Electronic energy + Delta-G solvation = -17975.207195 eV Core-core repulsion = 14870.924215 eV Total energy + Delta-G solvation = -3104.282981 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 262.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.72532 -37.13068 -36.95176 -35.81640 -34.17767 -34.04121 -31.57492 -28.86859 -27.71274 -26.07871 -24.13223 -21.32263 -20.52266 -19.19831 -18.02299 -17.24725 -16.86405 -16.05302 -15.93519 -15.85058 -15.51612 -14.60778 -14.38556 -14.06585 -13.84395 -13.76885 -13.09967 -12.88202 -12.69979 -12.65226 -12.22764 -11.99495 -11.95377 -11.88002 -11.35357 -11.33003 -10.53576 -10.34204 -10.22961 -9.97872 -9.62719 -9.40750 -8.88392 -8.72438 -6.22419 -4.24751 0.28670 2.20435 2.40982 2.70078 3.21973 3.29946 3.32835 3.92740 3.96494 4.07584 4.30124 4.77910 4.86399 4.92443 5.05510 5.08172 5.12323 5.18154 5.23051 5.33198 5.36642 5.45884 5.74078 6.14457 6.18244 6.68023 6.70762 6.83446 7.46861 7.75843 8.29372 8.78105 9.36544 10.89800 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.036140 B = 0.005034 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.582899 B = 5560.958052 C = 5737.740134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.629 5.629 3 C 0.350 3.650 4 N -1.026 6.026 5 S 2.609 3.391 6 O -0.948 6.948 7 O -0.951 6.951 8 C -0.577 4.577 9 C -0.007 4.007 10 C -0.522 4.522 11 H 0.078 0.922 12 C 0.073 3.927 13 N -0.894 5.894 14 Si 0.869 3.131 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.262 1.262 18 C 0.091 3.909 19 C 0.522 3.478 20 O -0.520 6.520 21 H 0.061 0.939 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.267 0.733 31 H 0.113 0.887 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.617 -5.949 -9.572 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.366 5.366 3 C 0.138 3.862 4 N -0.863 5.863 5 S 2.708 3.292 6 O -0.939 6.939 7 O -0.942 6.942 8 C -0.711 4.711 9 C -0.047 4.047 10 C -0.561 4.561 11 H 0.096 0.904 12 C -0.130 4.130 13 N -0.532 5.532 14 Si 0.695 3.305 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.186 1.186 18 C -0.038 4.038 19 C 0.308 3.692 20 O -0.395 6.395 21 H 0.080 0.920 22 H 0.099 0.901 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.131 0.869 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.323 -6.109 -10.268 17.896 hybrid contribution 0.423 0.456 0.200 0.653 sum -12.899 -5.653 -10.069 17.313 Atomic orbital electron populations 1.21570 0.76181 1.03760 1.02439 1.48258 1.07239 1.07252 1.73841 1.21072 0.76483 0.85750 1.02858 1.59222 1.19257 1.16266 1.91560 1.05524 0.71536 0.72752 0.79385 1.93575 1.55664 1.69465 1.75180 1.93564 1.80114 1.45299 1.75231 1.30316 1.10056 1.10653 1.20039 1.19441 0.90294 0.93734 1.01217 1.20814 1.14099 1.32033 0.89142 0.90361 1.24979 0.97005 0.95646 0.95371 1.69873 1.29225 1.38726 1.15335 0.86928 0.80384 0.80606 0.82547 1.19624 1.20694 1.18601 1.21586 0.95784 0.80462 1.05954 1.20636 0.88558 0.84750 0.75217 1.90772 1.78724 1.19717 1.50301 0.92028 0.90147 0.90332 0.89724 0.90160 0.85369 0.85302 0.94766 0.95209 0.92281 0.86913 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.02 59.85 0.66 1.35 16 2 N -0.63 -6.20 3.33 -185.48 -0.62 -6.82 16 3 C 0.35 3.38 7.60 -63.72 -0.48 2.89 16 4 N -1.03 -12.13 3.67 -118.64 -0.44 -12.57 16 5 S 2.61 39.79 5.70 -107.50 -0.61 39.18 16 6 O -0.95 -16.99 17.68 -57.54 -1.02 -18.00 16 7 O -0.95 -16.52 17.67 -57.54 -1.02 -17.54 16 8 C -0.58 -9.55 6.12 37.16 0.23 -9.32 16 9 C -0.01 -0.16 4.05 -27.88 -0.11 -0.28 16 10 C -0.52 -14.01 9.66 -34.44 -0.33 -14.34 16 11 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 14 Si 0.87 20.76 27.47 -169.99 -4.67 16.09 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 18 C 0.09 1.00 7.07 -4.90 -0.03 0.97 16 19 C 0.52 6.33 8.13 -11.17 -0.09 6.23 16 20 O -0.52 -7.85 17.67 5.56 0.10 -7.75 16 21 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.08 0.58 7.97 -51.93 -0.41 0.17 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.13 1.88 8.14 -51.92 -0.42 1.46 16 27 H 0.13 1.93 8.14 -51.93 -0.42 1.51 16 28 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 29 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 291.18 15.07 4.39 4.39 Total: -1.00 -35.04 291.18 -7.52 -42.56 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -4.15 Total: -3.39 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -0.27 Total: -10.54 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.28 Total: -45.00 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -1.94 Total: -43.29 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Atomic # 16 Polarization: 39.79 SS G_CDS: -0.61 Total: 39.18 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.04 -7.52 -42.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408136915.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.736 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds