Wall clock time and date at job start Mon Mar 30 2020 04:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46227 * 124.85130 * 2 1 4 4 N 1.46798 * 108.05285 * 179.97438 * 3 2 1 5 5 S 1.65600 * 127.02710 * 180.02562 * 4 3 2 6 6 O 1.42099 * 104.27496 * 206.07223 * 5 4 3 7 7 O 1.42093 * 104.27892 * 333.92900 * 5 4 3 8 8 C 1.81400 * 104.44987 * 90.00428 * 5 4 3 9 9 C 1.52997 * 109.47323 * 180.02562 * 8 5 4 10 10 C 1.50699 * 109.47281 * 180.02562 * 9 8 5 11 11 H 1.08007 * 119.99853 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00359 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00734 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 119.99861 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47072 * 90.00194 * 14 12 10 16 16 H 1.48501 * 109.47265 * 210.00242 * 14 12 10 17 17 H 1.48500 * 109.46843 * 330.00119 * 14 12 10 18 18 C 1.46988 * 105.93827 * 0.02562 * 4 3 2 19 19 C 1.34304 * 124.85533 * 179.69790 * 2 1 3 20 20 O 1.21276 * 125.42189 * 359.97438 * 19 2 1 21 21 H 1.09001 * 109.47060 * 90.00443 * 1 2 3 22 22 H 1.09004 * 109.47073 * 209.99932 * 1 2 3 23 23 H 1.09000 * 109.47212 * 330.00015 * 1 2 3 24 24 H 1.08997 * 109.75096 * 299.65677 * 3 2 1 25 25 H 1.09006 * 109.75314 * 60.34914 * 3 2 1 26 26 H 1.09011 * 109.46670 * 299.99618 * 8 5 4 27 27 H 1.08996 * 109.47545 * 59.99159 * 8 5 4 28 28 H 1.09003 * 109.46452 * 299.99483 * 9 8 5 29 29 H 1.08993 * 109.47312 * 59.99694 * 9 8 5 30 30 H 0.97001 * 120.00517 * 179.97438 * 13 12 10 31 31 H 1.08996 * 110.03805 * 119.28111 * 18 4 3 32 32 H 1.09005 * 110.03434 * 240.67046 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3007 1.2000 0.0000 4 7 3.7060 0.7757 0.0006 5 16 5.0428 1.7532 0.0015 6 8 6.0560 0.9616 -0.6034 7 8 4.5959 2.9586 -0.6037 8 6 5.4074 2.0199 1.7583 9 6 6.6372 2.9200 1.8930 10 6 6.9405 3.1411 3.3525 11 1 6.3179 2.6855 4.1085 12 6 8.0126 3.9249 3.7229 13 7 8.2770 4.1184 4.9966 14 14 9.0897 4.7123 2.4155 15 1 8.5489 6.0512 2.0690 16 1 10.4734 4.8567 2.9350 17 1 9.1032 3.8549 1.2031 18 6 3.6839 -0.6940 0.0004 19 6 2.2326 -1.1021 0.0058 20 8 1.8233 -2.2437 0.0123 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 2.0946 1.7923 -0.8915 25 1 2.0947 1.7923 0.8916 26 1 4.5533 2.4982 2.2380 27 1 5.6038 1.0613 2.2383 28 1 7.4914 2.4422 1.4132 29 1 6.4402 3.8786 1.4132 30 1 9.0315 4.6695 5.2571 31 1 4.1795 -1.0748 -0.8926 32 1 4.1795 -1.0750 0.8934 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408136915.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:21 Heat of formation + Delta-G solvation = -112.878672 kcal Electronic energy + Delta-G solvation = -17976.403299 eV Core-core repulsion = 14870.924215 eV Total energy + Delta-G solvation = -3105.479085 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 262.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.59814 -38.30890 -38.05607 -37.13862 -35.87869 -34.98423 -33.46080 -29.75491 -28.41183 -27.85612 -24.99707 -23.07191 -21.38315 -20.32708 -19.47216 -18.70843 -17.91224 -17.15193 -16.98594 -16.84230 -16.70243 -16.33589 -15.65795 -15.16635 -14.80430 -14.79794 -14.71864 -13.95524 -13.78589 -13.47214 -13.42723 -13.28199 -13.24241 -13.15302 -13.05414 -12.96605 -12.21763 -11.94594 -11.71266 -11.39708 -11.19387 -10.81998 -10.59833 -9.69845 -8.34144 -6.40268 -0.95126 1.29879 1.35191 1.37637 1.40614 1.46823 1.85644 2.32048 2.71974 2.95002 3.00627 3.10578 3.82832 3.92945 4.14113 4.14481 4.26076 4.33032 4.38016 4.52471 4.59764 4.65325 4.76870 4.88854 5.11406 5.13766 5.42629 5.50067 5.85820 6.18511 6.66797 6.88794 7.24532 8.81369 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.036140 B = 0.005034 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.582899 B = 5560.958052 C = 5737.740134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.624 5.624 3 C 0.339 3.661 4 N -1.023 6.023 5 S 2.651 3.349 6 O -0.974 6.974 7 O -0.969 6.969 8 C -0.584 4.584 9 C -0.019 4.019 10 C -0.527 4.527 11 H 0.049 0.951 12 C 0.013 3.987 13 N -0.942 5.942 14 Si 0.925 3.075 15 H -0.260 1.260 16 H -0.278 1.278 17 H -0.246 1.246 18 C 0.086 3.914 19 C 0.519 3.481 20 O -0.557 6.557 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.106 0.894 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.035 0.965 29 H 0.037 0.963 30 H 0.269 0.731 31 H 0.118 0.882 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.509 -5.548 -11.090 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.359 5.359 3 C 0.128 3.872 4 N -0.862 5.862 5 S 2.748 3.252 6 O -0.964 6.964 7 O -0.959 6.959 8 C -0.716 4.716 9 C -0.059 4.059 10 C -0.566 4.566 11 H 0.067 0.933 12 C -0.185 4.185 13 N -0.582 5.582 14 Si 0.747 3.253 15 H -0.184 1.184 16 H -0.204 1.204 17 H -0.169 1.169 18 C -0.042 4.042 19 C 0.305 3.695 20 O -0.436 6.436 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.125 0.875 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.164 0.836 27 H 0.159 0.841 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.235 -5.675 -11.785 19.332 hybrid contribution 0.566 0.287 0.702 0.947 sum -13.669 -5.387 -11.083 18.404 Atomic orbital electron populations 1.21826 0.74369 1.04819 1.03530 1.48416 1.08376 1.06608 1.72464 1.21462 0.74995 0.85804 1.04890 1.58754 1.19715 1.16460 1.91223 1.04057 0.71229 0.72050 0.77858 1.93542 1.57429 1.70116 1.75328 1.93539 1.80593 1.46603 1.75193 1.30309 1.08372 1.10373 1.22552 1.19406 0.92993 0.95442 0.98013 1.21179 1.13236 1.30885 0.91287 0.93266 1.25880 0.98744 0.96572 0.97345 1.70011 1.30342 1.40312 1.17527 0.86027 0.78570 0.80292 0.80364 1.18414 1.20372 1.16915 1.21735 0.95663 0.79755 1.07080 1.20723 0.89098 0.84666 0.74982 1.90754 1.79282 1.21150 1.52408 0.90938 0.90866 0.87528 0.88367 0.87578 0.83562 0.84062 0.94706 0.94494 0.92189 0.86425 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 11.02 127.77 1.41 2.45 16 2 N -0.62 -10.69 3.33 -859.40 -2.86 -13.55 16 3 C 0.34 5.43 7.60 170.95 1.30 6.73 16 4 N -1.02 -21.40 3.67 -529.25 -1.94 -23.34 16 5 S 2.65 74.32 5.70 -56.49 -0.32 74.00 16 6 O -0.97 -32.86 17.68 -127.65 -2.26 -35.12 16 7 O -0.97 -30.98 17.67 -127.65 -2.26 -33.24 16 8 C -0.58 -18.18 6.12 71.98 0.44 -17.74 16 9 C -0.02 -0.83 4.05 29.85 0.12 -0.71 16 10 C -0.53 -28.36 9.66 25.60 0.25 -28.12 16 11 H 0.05 2.84 7.99 -2.91 -0.02 2.82 16 12 C 0.01 0.73 5.47 84.65 0.46 1.19 16 13 N -0.94 -56.65 13.96 21.45 0.30 -56.35 16 14 Si 0.92 42.06 27.47 68.60 1.88 43.95 16 15 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 18 C 0.09 1.73 7.07 85.56 0.60 2.33 16 19 C 0.52 11.74 8.13 87.75 0.71 12.45 16 20 O -0.56 -16.48 17.67 -3.02 -0.05 -16.53 16 21 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.07 0.94 7.97 -2.38 -0.02 0.93 16 23 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.15 3.95 8.14 -2.38 -0.02 3.93 16 27 H 0.14 4.00 8.14 -2.39 -0.02 3.98 16 28 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 29 H 0.04 1.53 7.57 -2.39 -0.02 1.51 16 30 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -75.40 291.18 -1.15 -76.55 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.06 Total: 5.05 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 5.30 Total: -21.41 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -4.50 Total: -93.24 kcal Atomic # 8 Polarization: -80.32 SS G_CDS: -4.57 Total: -84.89 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.88 Total: 43.95 kcal Atomic # 16 Polarization: 74.32 SS G_CDS: -0.32 Total: 74.00 kcal Total: -75.40 -1.15 -76.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408136915.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.332 kcal (2) G-P(sol) polarization free energy of solvation -75.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds