Wall clock time and date at job start Mon Mar 30 2020 04:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20760 * 119.99752 * 2 1 4 4 C 1.50692 * 120.00078 * 179.97438 * 2 1 3 5 5 C 1.50702 * 109.47042 * 180.02562 * 4 2 1 6 6 C 1.38660 * 119.87215 * 264.97613 * 5 4 2 7 7 C 1.38616 * 120.49812 * 180.02562 * 6 5 4 8 8 C 1.37637 * 120.25182 * 359.74229 * 7 6 5 9 9 C 1.40701 * 119.73821 * 0.50997 * 8 7 6 10 10 C 1.41396 * 120.23951 * 179.76709 * 9 8 7 11 11 H 1.08006 * 120.00223 * 154.81559 * 10 9 8 12 12 C 1.39949 * 120.00160 * 334.53907 * 10 9 8 13 13 N 1.30821 * 119.99997 * 342.65252 * 12 10 9 14 14 Si 1.86804 * 119.99791 * 162.64675 * 12 10 9 15 15 H 1.48495 * 109.47168 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46778 * 120.00200 * 14 12 10 17 17 H 1.48501 * 109.47123 * 240.00076 * 14 12 10 18 18 C 1.37591 * 119.88109 * 84.99926 * 5 4 2 19 19 C 1.50705 * 120.12317 * 359.95572 * 18 5 4 20 20 C 1.50702 * 109.47208 * 270.02319 * 19 18 5 21 21 O 1.20831 * 119.99759 * 359.97438 * 20 19 18 22 22 O 1.34230 * 120.00309 * 180.02562 * 20 19 18 23 23 H 1.09000 * 109.47251 * 270.00072 * 1 2 3 24 24 H 1.09002 * 109.47177 * 30.00239 * 1 2 3 25 25 H 1.09002 * 109.46686 * 149.99988 * 1 2 3 26 26 H 1.09000 * 109.47819 * 60.00212 * 4 2 1 27 27 H 1.09003 * 109.47690 * 299.99880 * 4 2 1 28 28 H 1.08001 * 119.75256 * 0.04170 * 6 5 4 29 29 H 1.07998 * 119.87429 * 180.02562 * 7 6 5 30 30 H 1.08003 * 120.13218 * 180.25484 * 8 7 6 31 31 H 0.97003 * 120.00080 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.47331 * 30.02367 * 19 18 5 33 33 H 1.09003 * 109.46776 * 150.02813 * 19 18 5 34 34 H 0.96691 * 117.00056 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7421 -1.0296 0.0011 6 6 4.4408 -1.0072 -1.1964 7 6 5.8039 -0.7557 -1.2110 8 6 6.4781 -0.5199 -0.0344 9 6 5.7803 -0.5455 1.1871 10 6 6.4633 -0.3097 2.4025 11 1 5.9260 0.0699 3.2591 12 6 7.8345 -0.5735 2.4972 13 7 8.4163 -1.3385 1.6097 14 14 8.8339 0.1670 3.8909 15 1 7.9472 0.9878 4.7541 16 1 9.4400 -0.9221 4.6983 17 1 9.9089 1.0233 3.3286 18 6 4.3966 -0.8018 1.1898 19 6 3.6344 -0.8264 2.4896 20 6 3.1221 0.5570 2.7978 21 8 3.3528 1.4694 2.0399 22 8 2.4105 0.7759 3.9147 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.9973 -1.8771 -0.8891 27 1 1.9972 -1.8763 0.8908 28 1 3.9190 -1.1867 -2.1248 29 1 6.3380 -0.7402 -2.1495 30 1 7.5394 -0.3201 -0.0484 31 1 9.3666 -1.5217 1.6756 32 1 2.7934 -1.5146 2.4048 33 1 4.2946 -1.1564 3.2917 34 1 2.1030 1.6795 4.0693 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514263481.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:10 Heat of formation + Delta-G solvation = -116.387827 kcal Electronic energy + Delta-G solvation = -20089.306813 eV Core-core repulsion = 16951.771952 eV Total energy + Delta-G solvation = -3137.534861 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.74658 -38.79731 -37.42850 -35.28428 -33.90810 -32.19041 -31.27774 -29.83014 -27.73744 -25.78648 -25.11111 -21.59909 -20.71244 -19.57692 -18.68743 -17.27295 -16.94429 -15.84385 -15.69783 -15.21774 -15.07399 -14.65168 -14.52980 -14.19374 -13.73388 -13.31521 -12.56773 -12.28265 -12.18290 -12.09702 -11.71867 -11.58184 -11.49461 -11.38780 -11.03068 -10.92327 -10.67569 -10.53892 -10.34240 -9.64519 -9.57680 -9.39314 -9.19953 -9.01031 -7.34049 -7.23614 -6.76945 -4.37128 2.52899 2.75032 2.83902 3.07745 3.10722 3.13477 3.22646 3.93013 3.95017 4.49605 4.74819 5.27877 5.43976 5.47662 5.64278 5.71041 5.78132 5.90174 5.92893 6.11096 6.28864 6.37661 6.39876 6.48276 6.77287 7.05782 7.17820 7.24771 7.39974 7.60301 7.87520 8.02657 8.08616 8.12349 8.26658 8.61236 8.72851 8.87955 8.97428 10.17300 Molecular weight = 262.10amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.008010 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.684843 B = 3494.641700 C = 4392.049101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.327 3.673 3 O -0.408 6.408 4 C -0.130 4.130 5 C -0.037 4.037 6 C -0.226 4.226 7 C -0.102 4.102 8 C -0.157 4.157 9 C 0.130 3.870 10 C -0.460 4.460 11 H 0.075 0.925 12 C 0.078 3.922 13 N -0.792 5.792 14 Si 0.904 3.096 15 H -0.261 1.261 16 H -0.274 1.274 17 H -0.271 1.271 18 C -0.178 4.178 19 C -0.047 4.047 20 C 0.455 3.545 21 O -0.472 6.472 22 O -0.536 6.536 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.280 0.720 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.154 -1.552 1.263 10.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.199 3.801 3 O -0.277 6.277 4 C -0.167 4.167 5 C -0.037 4.037 6 C -0.245 4.245 7 C -0.121 4.121 8 C -0.176 4.176 9 C 0.128 3.872 10 C -0.489 4.489 11 H 0.093 0.907 12 C -0.140 4.140 13 N -0.417 5.417 14 Si 0.728 3.272 15 H -0.185 1.185 16 H -0.199 1.199 17 H -0.197 1.197 18 C -0.179 4.179 19 C -0.085 4.085 20 C 0.295 3.705 21 O -0.355 6.355 22 O -0.349 6.349 23 H 0.104 0.896 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -9.372 -1.226 0.900 9.494 hybrid contribution 0.280 0.780 0.655 1.056 sum -9.092 -0.446 1.555 9.234 Atomic orbital electron populations 1.22303 0.95834 1.03943 1.03847 1.24603 0.90965 0.91217 0.73332 1.90578 1.71288 1.34213 1.31649 1.21147 0.94974 0.97033 1.03533 1.18612 0.91303 1.00230 0.93557 1.20111 0.94529 1.14821 0.95038 1.20642 0.93992 1.00523 0.96921 1.21277 0.99923 1.05189 0.91240 1.17308 0.89825 0.86919 0.93143 1.19523 0.92962 1.38582 0.97880 0.90711 1.25878 0.98341 0.92731 0.97004 1.69826 1.12409 1.26179 1.33275 0.86332 0.79869 0.79799 0.81197 1.18456 1.19920 1.19654 1.18796 0.94542 1.13966 0.90605 1.19978 0.99621 0.89382 0.99485 1.24181 0.75249 0.93442 0.77635 1.90797 1.52381 1.45124 1.47182 1.84582 1.67735 1.37587 1.44961 0.89578 0.90410 0.90237 0.88999 0.88884 0.89648 0.89403 0.86509 0.90905 0.89743 0.87478 0.74890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.34 10.25 36.01 0.37 -1.97 16 2 C 0.33 5.54 6.75 -29.04 -0.20 5.34 16 3 O -0.41 -9.01 13.79 -16.91 -0.23 -9.24 16 4 C -0.13 -2.15 5.24 -29.04 -0.15 -2.30 16 5 C -0.04 -0.81 4.37 -104.70 -0.46 -1.27 16 6 C -0.23 -5.15 9.68 -39.29 -0.38 -5.53 16 7 C -0.10 -2.48 10.02 -39.66 -0.40 -2.88 16 8 C -0.16 -4.18 8.69 -38.87 -0.34 -4.52 16 9 C 0.13 3.48 5.56 -106.83 -0.59 2.89 16 10 C -0.46 -12.15 8.15 -37.74 -0.31 -12.46 16 11 H 0.07 1.93 6.82 -52.48 -0.36 1.58 16 12 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 13 N -0.79 -20.30 10.99 55.55 0.61 -19.69 16 14 Si 0.90 18.92 29.59 -169.99 -5.03 13.88 16 15 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 C -0.18 -4.22 4.43 -103.92 -0.46 -4.68 16 19 C -0.05 -0.96 4.92 -29.03 -0.14 -1.10 16 20 C 0.45 9.26 7.65 36.01 0.28 9.53 16 21 O -0.47 -11.46 13.97 -26.35 -0.37 -11.82 16 22 O -0.54 -8.66 13.42 -39.26 -0.53 -9.19 16 23 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 27 H 0.09 1.33 6.15 -51.93 -0.32 1.01 16 28 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.12 3.20 6.22 -52.48 -0.33 2.87 16 31 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 32 H 0.08 1.41 6.01 -51.93 -0.31 1.10 16 33 H 0.11 2.16 6.76 -51.93 -0.35 1.81 16 34 H 0.39 4.73 9.10 45.56 0.41 5.15 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -32.70 291.88 -6.94 -39.64 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -2.92 Total: 9.09 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -2.87 Total: -17.07 kcal Atomic # 7 Polarization: -20.30 SS G_CDS: 0.61 Total: -19.69 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.13 Total: -30.26 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.70 -6.94 -39.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514263481.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.749 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds