Wall clock time and date at job start Mon Mar 30 2020 04:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20760 * 119.99752 * 2 1 4 4 C 1.50692 * 120.00078 * 179.97438 * 2 1 3 5 5 C 1.50702 * 109.47042 * 180.02562 * 4 2 1 6 6 C 1.38660 * 119.87215 * 264.97613 * 5 4 2 7 7 C 1.38616 * 120.49812 * 180.02562 * 6 5 4 8 8 C 1.37637 * 120.25182 * 359.74229 * 7 6 5 9 9 C 1.40701 * 119.73821 * 0.50997 * 8 7 6 10 10 C 1.41396 * 120.23951 * 179.76709 * 9 8 7 11 11 H 1.08006 * 120.00223 * 154.81559 * 10 9 8 12 12 C 1.39949 * 120.00160 * 334.53907 * 10 9 8 13 13 N 1.30821 * 119.99997 * 342.65252 * 12 10 9 14 14 Si 1.86804 * 119.99791 * 162.64675 * 12 10 9 15 15 H 1.48495 * 109.47168 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46778 * 120.00200 * 14 12 10 17 17 H 1.48501 * 109.47123 * 240.00076 * 14 12 10 18 18 C 1.37591 * 119.88109 * 84.99926 * 5 4 2 19 19 C 1.50705 * 120.12317 * 359.95572 * 18 5 4 20 20 C 1.50702 * 109.47208 * 270.02319 * 19 18 5 21 21 O 1.20831 * 119.99759 * 359.97438 * 20 19 18 22 22 O 1.34230 * 120.00309 * 180.02562 * 20 19 18 23 23 H 1.09000 * 109.47251 * 270.00072 * 1 2 3 24 24 H 1.09002 * 109.47177 * 30.00239 * 1 2 3 25 25 H 1.09002 * 109.46686 * 149.99988 * 1 2 3 26 26 H 1.09000 * 109.47819 * 60.00212 * 4 2 1 27 27 H 1.09003 * 109.47690 * 299.99880 * 4 2 1 28 28 H 1.08001 * 119.75256 * 0.04170 * 6 5 4 29 29 H 1.07998 * 119.87429 * 180.02562 * 7 6 5 30 30 H 1.08003 * 120.13218 * 180.25484 * 8 7 6 31 31 H 0.97003 * 120.00080 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.47331 * 30.02367 * 19 18 5 33 33 H 1.09003 * 109.46776 * 150.02813 * 19 18 5 34 34 H 0.96691 * 117.00056 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7421 -1.0296 0.0011 6 6 4.4408 -1.0072 -1.1964 7 6 5.8039 -0.7557 -1.2110 8 6 6.4781 -0.5199 -0.0344 9 6 5.7803 -0.5455 1.1871 10 6 6.4633 -0.3097 2.4025 11 1 5.9260 0.0699 3.2591 12 6 7.8345 -0.5735 2.4972 13 7 8.4163 -1.3385 1.6097 14 14 8.8339 0.1670 3.8909 15 1 7.9472 0.9878 4.7541 16 1 9.4400 -0.9221 4.6983 17 1 9.9089 1.0233 3.3286 18 6 4.3966 -0.8018 1.1898 19 6 3.6344 -0.8264 2.4896 20 6 3.1221 0.5570 2.7978 21 8 3.3528 1.4694 2.0399 22 8 2.4105 0.7759 3.9147 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.9973 -1.8771 -0.8891 27 1 1.9972 -1.8763 0.8908 28 1 3.9190 -1.1867 -2.1248 29 1 6.3380 -0.7402 -2.1495 30 1 7.5394 -0.3201 -0.0484 31 1 9.3666 -1.5217 1.6756 32 1 2.7934 -1.5146 2.4048 33 1 4.2946 -1.1564 3.2917 34 1 2.1030 1.6795 4.0693 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514263481.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:09 Heat of formation + Delta-G solvation = -136.756626 kcal Electronic energy + Delta-G solvation = -20090.190071 eV Core-core repulsion = 16951.771952 eV Total energy + Delta-G solvation = -3138.418119 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.31874 -40.25268 -39.11358 -36.80918 -35.73150 -33.89117 -32.89935 -31.12453 -29.38356 -27.30047 -26.98848 -23.22580 -22.47007 -21.14638 -20.17874 -18.82505 -18.75027 -17.46921 -17.23341 -16.90881 -16.38942 -16.26409 -15.90494 -15.78707 -15.32382 -14.95764 -14.23952 -13.85185 -13.54909 -13.35522 -13.24232 -13.11870 -12.97752 -12.88963 -12.70152 -12.57628 -12.34771 -12.15773 -12.02972 -11.33220 -11.29111 -11.20919 -11.03073 -10.40248 -9.22515 -9.04303 -8.62729 -6.32457 0.95823 1.06077 1.27330 1.34852 1.47874 1.50342 1.54676 2.18385 2.45882 2.74530 3.42455 3.85610 3.99380 4.20065 4.32414 4.37291 4.49205 4.64454 4.72217 4.75453 4.80178 4.85964 4.94831 5.06468 5.16871 5.25727 5.35535 5.57316 5.76125 5.81254 6.02250 6.16119 6.20592 6.39186 6.71756 6.89716 6.95930 7.08975 7.27242 8.33865 Molecular weight = 262.10amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.008010 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.684843 B = 3494.641700 C = 4392.049101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.329 3.671 3 O -0.470 6.470 4 C -0.133 4.133 5 C -0.042 4.042 6 C -0.235 4.235 7 C -0.114 4.114 8 C -0.196 4.196 9 C 0.097 3.903 10 C -0.490 4.490 11 H 0.070 0.930 12 C 0.038 3.962 13 N -0.823 5.823 14 Si 0.972 3.028 15 H -0.263 1.263 16 H -0.258 1.258 17 H -0.269 1.269 18 C -0.187 4.187 19 C -0.049 4.049 20 C 0.464 3.536 21 O -0.516 6.516 22 O -0.519 6.519 23 H 0.105 0.895 24 H 0.077 0.923 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.287 0.713 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.758 -2.442 1.996 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.204 3.796 3 O -0.344 6.344 4 C -0.170 4.170 5 C -0.042 4.042 6 C -0.254 4.254 7 C -0.132 4.132 8 C -0.216 4.216 9 C 0.094 3.906 10 C -0.520 4.520 11 H 0.088 0.912 12 C -0.177 4.177 13 N -0.449 5.449 14 Si 0.793 3.207 15 H -0.187 1.187 16 H -0.183 1.183 17 H -0.194 1.194 18 C -0.188 4.188 19 C -0.086 4.086 20 C 0.306 3.694 21 O -0.403 6.403 22 O -0.333 6.333 23 H 0.123 0.877 24 H 0.096 0.904 25 H 0.134 0.866 26 H 0.144 0.856 27 H 0.140 0.860 28 H 0.132 0.868 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -12.014 -2.143 1.649 12.314 hybrid contribution 0.953 1.019 0.377 1.445 sum -11.061 -1.124 2.026 11.301 Atomic orbital electron populations 1.22266 0.91197 1.05765 1.05558 1.25278 0.93410 0.90016 0.70859 1.90594 1.72954 1.36040 1.34833 1.21338 0.90956 0.98067 1.06605 1.19209 0.94554 0.97935 0.92493 1.20554 0.94055 1.13907 0.96847 1.20924 0.95211 1.00245 0.96843 1.21240 0.99334 1.08335 0.92664 1.17719 0.91735 0.87883 0.93225 1.19672 0.94151 1.40255 0.97928 0.91211 1.26655 0.98925 0.92650 0.99450 1.69882 1.12996 1.27080 1.34916 0.85320 0.78090 0.79151 0.78156 1.18716 1.18277 1.19392 1.19220 0.93912 1.12620 0.93069 1.20004 1.00586 0.90402 0.97596 1.24029 0.74732 0.92831 0.77762 1.90804 1.54231 1.46347 1.48892 1.84501 1.66630 1.39410 1.42764 0.87671 0.90426 0.86641 0.85602 0.85970 0.86844 0.87850 0.88751 0.90262 0.85752 0.87958 0.72406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.55 10.25 71.24 0.73 -2.82 16 2 C 0.33 10.12 6.75 29.10 0.20 10.31 16 3 O -0.47 -20.36 13.79 20.45 0.28 -20.08 16 4 C -0.13 -3.91 5.24 29.10 0.15 -3.76 16 5 C -0.04 -1.79 4.37 -19.92 -0.09 -1.88 16 6 C -0.23 -10.55 9.68 22.46 0.22 -10.33 16 7 C -0.11 -5.67 10.02 22.22 0.22 -5.45 16 8 C -0.20 -11.01 8.69 22.73 0.20 -10.81 16 9 C 0.10 5.35 5.56 -21.29 -0.12 5.23 16 10 C -0.49 -26.93 8.15 23.46 0.19 -26.74 16 11 H 0.07 3.74 6.82 -2.91 -0.02 3.72 16 12 C 0.04 1.98 5.14 85.26 0.44 2.41 16 13 N -0.82 -43.96 10.99 21.83 0.24 -43.72 16 14 Si 0.97 39.70 29.59 68.60 2.03 41.73 16 15 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 16 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 17 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 18 C -0.19 -8.89 4.43 -19.41 -0.09 -8.98 16 19 C -0.05 -1.91 4.92 29.10 0.14 -1.76 16 20 C 0.46 18.34 7.65 71.24 0.54 18.88 16 21 O -0.52 -25.15 13.97 29.21 0.41 -24.74 16 22 O -0.52 -15.44 13.42 -51.42 -0.69 -16.14 16 23 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.11 1.34 8.12 -2.39 -0.02 1.32 16 26 H 0.13 2.87 8.05 -2.39 -0.02 2.85 16 27 H 0.12 2.88 6.15 -2.39 -0.01 2.86 16 28 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 29 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.09 5.55 6.22 -2.91 -0.02 5.53 16 31 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 32 H 0.12 3.72 6.01 -2.39 -0.01 3.70 16 33 H 0.10 4.09 6.76 -2.39 -0.02 4.08 16 34 H 0.42 8.89 9.10 -74.06 -0.67 8.21 16 Total: -1.00 -75.97 291.88 5.48 -70.48 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.47 Total: 28.15 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 2.74 Total: -35.68 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.24 Total: -43.72 kcal Atomic # 8 Polarization: -60.96 SS G_CDS: 0.00 Total: -60.96 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -75.97 5.48 -70.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514263481.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.274 kcal (2) G-P(sol) polarization free energy of solvation -75.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds