Wall clock time and date at job start Mon Mar 30 2020 04:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30516 * 1 3 3 Si 1.86806 * 119.99780 * 2 1 4 4 H 1.48502 * 109.46836 * 269.99211 * 3 2 1 5 5 H 1.48501 * 109.47250 * 29.99417 * 3 2 1 6 6 H 1.48496 * 109.47144 * 149.99791 * 3 2 1 7 7 C 1.40457 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00517 * 180.02562 * 7 2 1 9 9 C 1.41029 * 119.99764 * 0.02562 * 7 2 1 10 10 O 1.21433 * 120.00189 * 359.97438 * 9 7 2 11 11 C 1.50701 * 119.99665 * 179.97438 * 9 7 2 12 12 N 1.46906 * 109.46965 * 180.02562 * 11 9 7 13 13 C 1.46749 * 110.99782 * 295.44054 * 12 11 9 14 14 C 1.53428 * 108.59542 * 285.48887 * 13 12 11 15 15 O 1.43138 * 107.87990 * 296.81652 * 14 13 12 16 16 C 1.36264 * 116.67940 * 45.26359 * 15 14 13 17 17 C 1.39370 * 118.73219 * 165.34029 * 16 15 14 18 18 N 1.39979 * 119.95563 * 359.53546 * 17 16 15 19 19 C 1.38738 * 120.08692 * 179.55641 * 17 16 15 20 20 C 1.38235 * 119.93489 * 359.97438 * 19 17 16 21 21 C 1.38023 * 120.17237 * 0.07475 * 20 19 17 22 22 C 1.38708 * 121.41921 * 345.02658 * 16 15 14 23 23 H 0.97009 * 120.00357 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47133 * 60.00045 * 11 9 7 25 25 H 1.08996 * 109.47320 * 299.99785 * 11 9 7 26 26 H 1.09000 * 109.62083 * 45.22088 * 13 12 11 27 27 H 1.09002 * 109.61419 * 165.75908 * 13 12 11 28 28 H 1.08999 * 109.78282 * 177.21578 * 14 13 12 29 29 H 1.09004 * 109.81973 * 56.43455 * 14 13 12 30 30 H 0.96999 * 120.00403 * 180.02562 * 18 17 16 31 31 H 0.97002 * 120.00370 * 0.02562 * 18 17 16 32 32 H 1.08001 * 120.03113 * 179.97438 * 19 17 16 33 33 H 1.07999 * 119.91065 * 180.02562 * 20 19 17 34 34 H 1.08005 * 119.81024 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 2.4867 2.0464 -1.4001 5 1 1.4365 2.6528 0.6999 6 1 3.5366 1.4403 0.7001 7 6 2.0075 -1.2164 0.0005 8 1 3.0875 -1.2164 0.0010 9 6 1.3023 -2.4377 0.0005 10 8 0.0880 -2.4378 0.0005 11 6 2.0559 -3.7428 0.0005 12 7 1.1013 -4.8594 -0.0001 13 6 0.3118 -4.8770 1.2368 14 6 1.2003 -5.3909 2.3772 15 8 1.5727 -6.7386 2.0709 16 6 1.9834 -6.9851 0.7953 17 6 2.6422 -8.1827 0.5231 18 7 2.8786 -9.1002 1.5535 19 6 3.0644 -8.4665 -0.7677 20 6 2.8306 -7.5602 -1.7849 21 6 2.1794 -6.3725 -1.5197 22 6 1.7532 -6.0761 -0.2269 23 1 -0.4851 0.8401 -0.0004 24 1 2.6825 -3.8005 0.8905 25 1 2.6825 -3.8005 -0.8894 26 1 -0.0312 -3.8681 1.4664 27 1 -0.5456 -5.5388 1.1143 28 1 0.6472 -5.3652 3.3160 29 1 2.0932 -4.7708 2.4581 30 1 3.3374 -9.9337 1.3649 31 1 2.5837 -8.9024 2.4562 32 1 3.5752 -9.3947 -0.9775 33 1 3.1590 -7.7817 -2.7896 34 1 2.0001 -5.6683 -2.3188 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527429527.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:19 Heat of formation + Delta-G solvation = -35.248567 kcal Electronic energy + Delta-G solvation = -19735.548862 eV Core-core repulsion = 16633.825215 eV Total energy + Delta-G solvation = -3101.723648 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.70205 -37.63877 -36.99000 -35.50120 -33.44869 -32.57580 -30.36347 -28.78473 -28.09464 -26.80766 -24.79536 -23.76788 -21.53182 -20.40973 -19.05654 -17.60036 -17.10900 -16.57291 -16.21353 -15.45206 -15.19843 -14.92231 -14.36959 -14.33562 -14.08507 -13.69206 -13.15064 -12.96710 -12.47591 -12.43419 -12.22815 -11.48707 -11.39379 -11.26610 -11.20756 -10.88821 -10.56290 -10.41299 -10.28741 -10.23959 -10.17081 -8.94121 -8.64799 -7.42648 -7.31365 -7.06073 -6.26201 -4.94825 1.70783 1.90154 3.02663 3.11817 3.14833 3.58877 3.96383 4.03641 4.13295 4.18245 4.39350 5.10549 5.21774 5.33809 5.40154 5.54158 5.56040 5.65623 5.85160 5.89052 6.05596 6.26670 6.31593 6.42782 6.55774 6.61035 6.71683 6.87043 6.97601 7.21204 7.37278 7.50053 7.70713 7.94321 8.02828 8.03563 8.78763 8.82879 10.30278 10.52599 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034404 B = 0.005176 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.667209 B = 5408.701430 C = 5714.558497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.085 3.915 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.366 3.634 10 O -0.526 6.526 11 C 0.018 3.982 12 N -0.467 5.467 13 C 0.018 3.982 14 C 0.022 3.978 15 O -0.322 6.322 16 C 0.005 3.995 17 C 0.206 3.794 18 N -0.878 5.878 19 C -0.199 4.199 20 C -0.090 4.090 21 C -0.147 4.147 22 C 0.088 3.912 23 H 0.273 0.727 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.125 0.875 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.393 0.607 31 H 0.400 0.600 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.880 -12.021 2.174 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.259 3.741 10 O -0.413 6.413 11 C -0.108 4.108 12 N -0.182 5.182 13 C -0.109 4.109 14 C -0.055 4.055 15 O -0.236 6.236 16 C -0.046 4.046 17 C 0.102 3.898 18 N -0.419 5.419 19 C -0.223 4.223 20 C -0.110 4.110 21 C -0.168 4.168 22 C -0.011 4.011 23 H 0.084 0.916 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.143 0.857 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.221 0.779 31 H 0.228 0.772 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.732 -11.908 1.922 12.957 hybrid contribution 1.167 0.602 0.768 1.521 sum 5.899 -11.305 2.690 13.032 Atomic orbital electron populations 1.69942 1.07444 1.28015 1.31314 1.25957 0.94573 1.00817 0.92492 0.86402 0.80427 0.81049 0.79213 1.19399 1.20221 1.18645 1.20716 0.94881 0.91759 1.49461 0.91329 1.19382 0.89225 0.86620 0.78831 1.90383 1.15090 1.88053 1.47820 1.22922 0.94388 0.92780 1.00678 1.58914 1.23758 1.00482 1.35041 1.23064 0.95657 1.05791 0.86408 1.23582 0.99996 0.81578 1.00308 1.86094 1.81905 1.29921 1.25705 1.18417 1.04846 0.97049 0.84329 1.17081 0.95149 0.88365 0.89157 1.42251 1.68623 1.21398 1.09621 1.20256 1.09314 1.01822 0.90920 1.20600 0.98599 0.93425 0.98342 1.20669 1.03035 0.98194 0.94928 1.18882 0.96570 0.92667 0.92966 0.91562 0.94129 0.89923 0.85700 0.90237 0.87549 0.91869 0.77897 0.77191 0.86232 0.86132 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.81 11.72 55.57 0.65 -20.15 16 2 C 0.08 2.24 5.50 -17.28 -0.10 2.15 16 3 Si 0.90 19.07 29.56 -169.99 -5.03 14.05 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.54 -14.45 9.22 -37.69 -0.35 -14.80 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.37 9.89 6.48 -33.25 -0.22 9.67 16 10 O -0.53 -15.81 12.85 5.42 0.07 -15.74 16 11 C 0.02 0.40 5.13 -4.97 -0.03 0.38 16 12 N -0.47 -10.03 4.37 -172.20 -0.75 -10.78 16 13 C 0.02 0.37 5.59 -3.68 -0.02 0.35 16 14 C 0.02 0.38 7.06 37.38 0.26 0.64 16 15 O -0.32 -5.59 9.55 -20.58 -0.20 -5.79 16 16 C 0.00 0.08 6.49 -38.99 -0.25 -0.17 16 17 C 0.21 3.13 6.77 -83.53 -0.57 2.57 16 18 N -0.88 -10.31 9.08 32.53 0.30 -10.01 16 19 C -0.20 -2.73 9.89 -39.40 -0.39 -3.12 16 20 C -0.09 -1.29 10.03 -39.66 -0.40 -1.69 16 21 C -0.15 -2.53 9.35 -39.26 -0.37 -2.90 16 22 C 0.09 1.69 5.12 -83.61 -0.43 1.26 16 23 H 0.27 6.94 8.29 -40.82 -0.34 6.61 16 24 H 0.04 0.87 6.57 -51.93 -0.34 0.53 16 25 H 0.08 1.78 7.64 -51.93 -0.40 1.38 16 26 H 0.13 2.84 5.66 -51.93 -0.29 2.55 16 27 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.06 1.11 6.64 -51.93 -0.34 0.77 16 30 H 0.39 3.46 8.84 -40.82 -0.36 3.10 16 31 H 0.40 4.60 8.10 -40.82 -0.33 4.27 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 285.15 15.07 4.30 4.30 Total: -1.00 -31.75 285.15 -7.23 -38.98 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -3.73 Total: 10.82 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.84 Total: -5.67 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.19 Total: -40.94 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.13 Total: -21.52 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.75 -7.23 -38.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527429527.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.727 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds