Wall clock time and date at job start Mon Mar 30 2020 04:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30516 * 1 3 3 Si 1.86806 * 119.99780 * 2 1 4 4 H 1.48502 * 109.46836 * 269.99211 * 3 2 1 5 5 H 1.48501 * 109.47250 * 29.99417 * 3 2 1 6 6 H 1.48496 * 109.47144 * 149.99791 * 3 2 1 7 7 C 1.40457 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00517 * 180.02562 * 7 2 1 9 9 C 1.41029 * 119.99764 * 0.02562 * 7 2 1 10 10 O 1.21433 * 120.00189 * 359.97438 * 9 7 2 11 11 C 1.50701 * 119.99665 * 179.97438 * 9 7 2 12 12 N 1.46906 * 109.46965 * 180.02562 * 11 9 7 13 13 C 1.46749 * 110.99782 * 295.44054 * 12 11 9 14 14 C 1.53428 * 108.59542 * 285.48887 * 13 12 11 15 15 O 1.43138 * 107.87990 * 296.81652 * 14 13 12 16 16 C 1.36264 * 116.67940 * 45.26359 * 15 14 13 17 17 C 1.39370 * 118.73219 * 165.34029 * 16 15 14 18 18 N 1.39979 * 119.95563 * 359.53546 * 17 16 15 19 19 C 1.38738 * 120.08692 * 179.55641 * 17 16 15 20 20 C 1.38235 * 119.93489 * 359.97438 * 19 17 16 21 21 C 1.38023 * 120.17237 * 0.07475 * 20 19 17 22 22 C 1.38708 * 121.41921 * 345.02658 * 16 15 14 23 23 H 0.97009 * 120.00357 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47133 * 60.00045 * 11 9 7 25 25 H 1.08996 * 109.47320 * 299.99785 * 11 9 7 26 26 H 1.09000 * 109.62083 * 45.22088 * 13 12 11 27 27 H 1.09002 * 109.61419 * 165.75908 * 13 12 11 28 28 H 1.08999 * 109.78282 * 177.21578 * 14 13 12 29 29 H 1.09004 * 109.81973 * 56.43455 * 14 13 12 30 30 H 0.96999 * 120.00403 * 180.02562 * 18 17 16 31 31 H 0.97002 * 120.00370 * 0.02562 * 18 17 16 32 32 H 1.08001 * 120.03113 * 179.97438 * 19 17 16 33 33 H 1.07999 * 119.91065 * 180.02562 * 20 19 17 34 34 H 1.08005 * 119.81024 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 2.4867 2.0464 -1.4001 5 1 1.4365 2.6528 0.6999 6 1 3.5366 1.4403 0.7001 7 6 2.0075 -1.2164 0.0005 8 1 3.0875 -1.2164 0.0010 9 6 1.3023 -2.4377 0.0005 10 8 0.0880 -2.4378 0.0005 11 6 2.0559 -3.7428 0.0005 12 7 1.1013 -4.8594 -0.0001 13 6 0.3118 -4.8770 1.2368 14 6 1.2003 -5.3909 2.3772 15 8 1.5727 -6.7386 2.0709 16 6 1.9834 -6.9851 0.7953 17 6 2.6422 -8.1827 0.5231 18 7 2.8786 -9.1002 1.5535 19 6 3.0644 -8.4665 -0.7677 20 6 2.8306 -7.5602 -1.7849 21 6 2.1794 -6.3725 -1.5197 22 6 1.7532 -6.0761 -0.2269 23 1 -0.4851 0.8401 -0.0004 24 1 2.6825 -3.8005 0.8905 25 1 2.6825 -3.8005 -0.8894 26 1 -0.0312 -3.8681 1.4664 27 1 -0.5456 -5.5388 1.1143 28 1 0.6472 -5.3652 3.3160 29 1 2.0932 -4.7708 2.4581 30 1 3.3374 -9.9337 1.3649 31 1 2.5837 -8.9024 2.4562 32 1 3.5752 -9.3947 -0.9775 33 1 3.1590 -7.7817 -2.7896 34 1 2.0001 -5.6683 -2.3188 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527429527.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:19 Heat of formation + Delta-G solvation = -58.513449 kcal Electronic energy + Delta-G solvation = -19736.557703 eV Core-core repulsion = 16633.825215 eV Total energy + Delta-G solvation = -3102.732489 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.08437 -39.27254 -38.44332 -37.11718 -34.84826 -34.45542 -31.70782 -30.62040 -29.27264 -28.56700 -26.45968 -25.14819 -22.79969 -22.06678 -20.71635 -18.97818 -18.37689 -18.22781 -17.87934 -17.07635 -16.67237 -16.20894 -15.86917 -15.72230 -15.59105 -15.25177 -14.76148 -14.37969 -14.29861 -13.91325 -13.76453 -13.21499 -12.92063 -12.79183 -12.60928 -12.42321 -12.31567 -12.05899 -11.94550 -11.85589 -11.49180 -10.94515 -10.08024 -9.38317 -8.81589 -8.27282 -8.20426 -7.09161 0.44849 0.67066 1.35540 1.38792 1.54543 2.18038 2.21050 2.29814 2.72916 2.95320 3.08136 3.34827 3.68662 3.91877 4.02109 4.16095 4.28331 4.34363 4.46382 4.56688 4.58932 4.68106 4.74974 4.89469 4.94137 5.17414 5.19396 5.35955 5.66172 5.74225 5.95745 6.00085 6.11704 6.41551 6.71974 6.73531 6.80317 7.08524 8.28076 8.50927 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034404 B = 0.005176 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.667209 B = 5408.701430 C = 5714.558497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.032 3.968 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.250 1.250 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.347 3.653 10 O -0.567 6.567 11 C 0.036 3.964 12 N -0.488 5.488 13 C 0.022 3.978 14 C 0.033 3.967 15 O -0.320 6.320 16 C -0.021 4.021 17 C 0.207 3.793 18 N -0.863 5.863 19 C -0.189 4.189 20 C -0.077 4.077 21 C -0.170 4.170 22 C 0.059 3.941 23 H 0.281 0.719 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.136 0.864 29 H 0.055 0.945 30 H 0.411 0.589 31 H 0.402 0.598 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.133 -13.363 2.179 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.187 4.187 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.173 1.173 7 C -0.596 4.596 8 H 0.101 0.899 9 C 0.244 3.756 10 O -0.458 6.458 11 C -0.090 4.090 12 N -0.204 5.204 13 C -0.106 4.106 14 C -0.044 4.044 15 O -0.234 6.234 16 C -0.072 4.072 17 C 0.101 3.899 18 N -0.405 5.405 19 C -0.213 4.213 20 C -0.096 4.096 21 C -0.192 4.192 22 C -0.038 4.038 23 H 0.092 0.908 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.154 0.846 29 H 0.073 0.927 30 H 0.241 0.759 31 H 0.231 0.769 32 H 0.177 0.823 33 H 0.172 0.828 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.015 -13.311 1.940 15.171 hybrid contribution 0.479 0.871 0.736 1.237 sum 7.494 -12.440 2.676 14.768 Atomic orbital electron populations 1.70071 1.09695 1.29736 1.32037 1.27124 0.95410 1.05133 0.91082 0.85111 0.79033 0.75152 0.79695 1.18459 1.19274 1.17319 1.21229 0.95845 0.92717 1.49796 0.89862 1.20001 0.89025 0.88716 0.77899 1.90347 1.16785 1.89117 1.49572 1.22540 0.93964 0.91489 1.01025 1.58830 1.24196 1.01380 1.35991 1.22866 0.96301 1.03805 0.87593 1.23511 0.99203 0.81511 1.00180 1.86079 1.82062 1.29497 1.25790 1.18677 1.06304 0.98153 0.84038 1.17300 0.94155 0.87861 0.90578 1.42227 1.67879 1.21371 1.09031 1.20718 1.07975 1.02784 0.89811 1.20969 0.96585 0.91866 1.00228 1.20765 1.04686 0.99690 0.94015 1.19027 0.98355 0.92117 0.94341 0.90830 0.93555 0.89487 0.89062 0.90464 0.84615 0.92687 0.75866 0.76923 0.82306 0.82785 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.74 11.72 21.91 0.26 -45.49 16 2 C 0.03 1.71 5.50 85.43 0.47 2.18 16 3 Si 0.99 39.07 29.56 68.60 2.03 41.10 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 6 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 7 C -0.56 -31.20 9.22 23.50 0.22 -30.98 16 8 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 9 C 0.35 19.65 6.48 26.37 0.17 19.82 16 10 O -0.57 -36.12 12.85 -3.50 -0.05 -36.17 16 11 C 0.04 1.68 5.13 85.56 0.44 2.12 16 12 N -0.49 -21.86 4.37 -698.73 -3.05 -24.91 16 13 C 0.02 0.93 5.59 86.48 0.48 1.42 16 14 C 0.03 1.13 7.06 72.13 0.51 1.64 16 15 O -0.32 -10.88 9.55 -96.57 -0.92 -11.81 16 16 C -0.02 -0.73 6.49 22.66 0.15 -0.58 16 17 C 0.21 5.71 6.77 38.23 0.26 5.97 16 18 N -0.86 -17.42 9.08 -51.00 -0.46 -17.88 16 19 C -0.19 -4.45 9.89 22.39 0.22 -4.23 16 20 C -0.08 -2.00 10.03 22.22 0.22 -1.77 16 21 C -0.17 -5.82 9.35 22.48 0.21 -5.61 16 22 C 0.06 2.30 5.12 38.23 0.20 2.50 16 23 H 0.28 14.68 8.29 -92.70 -0.77 13.91 16 24 H 0.05 2.06 6.57 -2.39 -0.02 2.04 16 25 H 0.09 3.89 7.64 -2.39 -0.02 3.87 16 26 H 0.09 4.47 5.66 -2.39 -0.01 4.45 16 27 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 29 H 0.05 1.97 6.64 -2.38 -0.02 1.95 16 30 H 0.41 5.53 8.84 -92.71 -0.82 4.71 16 31 H 0.40 8.14 8.10 -92.71 -0.75 7.38 16 32 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 34 H 0.11 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -71.93 285.15 0.94 -71.00 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -0.41 Total: 31.69 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 3.55 Total: -7.54 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -3.26 Total: -88.27 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.97 Total: -47.98 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -71.93 0.94 -71.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527429527.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.483 kcal (2) G-P(sol) polarization free energy of solvation -71.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds