Wall clock time and date at job start Mon Mar 30 2020 04:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00275 * 2 1 4 4 H 1.48502 * 109.47254 * 239.99826 * 3 2 1 5 5 H 1.48499 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46933 * 119.99909 * 3 2 1 7 7 C 1.37879 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.53497 * 114.20563 * 180.02562 * 9 7 2 11 11 N 1.47072 * 87.98316 * 220.14498 * 10 9 7 12 12 C 1.34771 * 136.05882 * 207.08476 * 11 10 9 13 13 O 1.21285 * 119.99668 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.46501 * 109.47128 * 180.02562 * 14 12 11 16 16 C 1.35761 * 119.62853 * 90.00373 * 15 14 12 17 17 C 1.35340 * 120.70516 * 179.97438 * 16 15 14 18 18 C 1.40195 * 119.94737 * 359.97438 * 17 16 15 19 19 C 1.36399 * 119.26494 * 0.02562 * 18 17 16 20 20 C 1.34660 * 119.62214 * 269.97444 * 15 14 12 21 21 O 1.22062 * 119.98499 * 359.97438 * 20 15 14 22 22 C 1.47068 * 87.88197 * 27.34137 * 11 10 9 23 23 H 0.97000 * 119.99322 * 359.97438 * 1 2 3 24 24 H 1.09003 * 113.27983 * 313.06041 * 9 7 2 25 25 H 1.08995 * 113.46849 * 105.36570 * 10 9 7 26 26 H 1.09001 * 113.51715 * 334.92926 * 10 9 7 27 27 H 1.09001 * 109.47010 * 59.99697 * 14 12 11 28 28 H 1.09003 * 109.47255 * 299.99973 * 14 12 11 29 29 H 1.08006 * 119.64635 * 359.97036 * 16 15 14 30 30 H 1.08000 * 120.02559 * 179.97438 * 17 16 15 31 31 H 1.08007 * 120.36668 * 179.72879 * 18 17 16 32 32 H 1.08003 * 120.34387 * 180.02562 * 19 18 17 33 33 H 1.09001 * 113.46958 * 87.44433 * 22 11 10 34 34 H 1.09010 * 113.46575 * 217.87800 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.1487 -3.7443 0.0018 11 7 1.2078 -4.3598 -0.9463 12 6 0.8325 -5.6145 -1.2647 13 8 1.3290 -6.5601 -0.6900 14 6 -0.2038 -5.8424 -2.3347 15 7 -0.4357 -7.2804 -2.4916 16 6 -1.3941 -7.8907 -1.7485 17 6 -1.6270 -9.2178 -1.8761 18 6 -0.8746 -9.9763 -2.7839 19 6 0.0879 -9.3614 -3.5296 20 6 0.3039 -7.9818 -3.3716 21 8 1.1612 -7.4188 -4.0332 22 6 0.8614 -3.0040 -1.3985 23 1 -0.4849 0.8401 0.0004 24 1 0.4432 -2.5303 0.7318 25 1 2.1869 -4.2509 0.9661 26 1 3.1377 -3.5678 -0.4210 27 1 0.1501 -5.4261 -3.2779 28 1 -1.1352 -5.3537 -2.0486 29 1 -1.9769 -7.3109 -1.0480 30 1 -2.3919 -9.6921 -1.2792 31 1 -1.0517 -11.0366 -2.8881 32 1 0.6776 -9.9289 -4.2344 33 1 1.5107 -2.6314 -2.1908 34 1 -0.1972 -2.8798 -1.6272 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598042658.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:19 Heat of formation + Delta-G solvation = 7.298205 kcal Electronic energy + Delta-G solvation = -19060.774600 eV Core-core repulsion = 15960.895919 eV Total energy + Delta-G solvation = -3099.878681 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39941 -39.41276 -37.23736 -36.81552 -34.45094 -32.77005 -30.18902 -29.76209 -27.80896 -25.12723 -25.04046 -23.86911 -22.72890 -20.60808 -18.55816 -17.54318 -17.34765 -17.04561 -16.55991 -16.33651 -15.45285 -14.97189 -14.87069 -14.52979 -14.26905 -14.07815 -13.66121 -12.61855 -12.47760 -12.32280 -12.18977 -11.89815 -11.85699 -11.61482 -11.34156 -11.00758 -10.89610 -10.47523 -10.42140 -9.92542 -9.69096 -9.31069 -9.10502 -8.64814 -8.03360 -7.96025 -6.24991 -4.30604 0.80206 1.88110 2.49101 2.92767 3.22389 3.27773 3.29794 3.42260 3.76286 4.28767 4.50791 4.61324 4.77857 4.83864 5.04993 5.08380 5.16954 5.25408 5.36645 5.85875 5.93288 5.99622 6.07105 6.15905 6.20097 6.35266 6.42586 6.48283 6.53339 6.68569 7.06576 7.46645 7.72722 8.06243 8.10093 8.34239 8.53996 8.73428 9.36754 10.84764 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.047571 B = 0.003936 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.447505 B = 7111.914978 C = 7204.563418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.064 0.936 9 C 0.037 3.963 10 C 0.102 3.898 11 N -0.640 5.640 12 C 0.520 3.480 13 O -0.554 6.554 14 C 0.076 3.924 15 N -0.477 5.477 16 C 0.149 3.851 17 C -0.241 4.241 18 C -0.016 4.016 19 C -0.245 4.245 20 C 0.518 3.482 21 O -0.552 6.552 22 C 0.094 3.906 23 H 0.265 0.735 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.160 0.840 30 H 0.144 0.856 31 H 0.133 0.867 32 H 0.146 0.854 33 H 0.078 0.922 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 -13.117 -3.847 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.018 3.982 10 C -0.020 4.020 11 N -0.374 5.374 12 C 0.308 3.692 13 O -0.433 6.433 14 C -0.050 4.050 15 N -0.186 5.186 16 C 0.021 3.979 17 C -0.264 4.264 18 C -0.037 4.037 19 C -0.267 4.267 20 C 0.320 3.680 21 O -0.434 6.434 22 C -0.028 4.028 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.145 0.855 28 H 0.138 0.862 29 H 0.178 0.822 30 H 0.162 0.838 31 H 0.150 0.850 32 H 0.164 0.836 33 H 0.096 0.904 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.165 -13.290 -4.040 15.197 hybrid contribution 0.348 0.872 -0.028 0.939 sum -5.817 -12.418 -4.068 14.304 Atomic orbital electron populations 1.69931 1.06089 1.27350 1.48942 1.25019 0.94887 0.99443 0.94071 0.86571 0.79602 0.82477 0.78913 1.19998 1.21185 1.20008 1.20873 0.93069 0.89491 1.52291 0.91797 1.20381 0.94748 0.91135 0.91950 1.23392 0.94383 0.92900 0.91309 1.49993 1.42519 1.04571 1.40297 1.20022 0.83752 0.81921 0.83517 1.90686 1.57545 1.40844 1.54257 1.21759 1.01089 0.80141 1.01963 1.45112 1.30176 1.09806 1.33555 1.21970 0.88970 0.94810 0.92107 1.20580 1.06857 0.92716 1.06213 1.21399 0.91262 1.00092 0.90982 1.22058 1.04246 0.93602 1.06800 1.17155 0.81962 0.88659 0.80229 1.90958 1.33454 1.71634 1.47347 1.23785 0.99953 0.76528 1.02545 0.92517 0.91204 0.92343 0.90685 0.85499 0.86205 0.82216 0.83806 0.84953 0.83609 0.90387 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.35 13.26 55.43 0.74 -22.61 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.52 -12.90 8.83 -34.44 -0.30 -13.20 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.04 0.84 3.79 -91.12 -0.35 0.49 16 10 C 0.10 2.11 8.17 -8.51 -0.07 2.04 16 11 N -0.64 -12.76 3.69 -185.06 -0.68 -13.44 16 12 C 0.52 10.12 8.14 -10.99 -0.09 10.03 16 13 O -0.55 -12.58 17.21 5.55 0.10 -12.48 16 14 C 0.08 1.13 5.64 -5.19 -0.03 1.11 16 15 N -0.48 -7.01 2.07 -121.07 -0.25 -7.26 16 16 C 0.15 1.65 10.28 -16.85 -0.17 1.47 16 17 C -0.24 -2.24 10.01 -39.88 -0.40 -2.64 16 18 C -0.02 -0.15 10.10 -39.51 -0.40 -0.55 16 19 C -0.25 -3.21 9.99 -39.38 -0.39 -3.61 16 20 C 0.52 8.72 7.40 -15.45 -0.11 8.60 16 21 O -0.55 -11.43 16.64 4.86 0.08 -11.34 16 22 C 0.09 1.89 8.00 -8.38 -0.07 1.82 16 23 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 24 H 0.07 1.70 8.11 -51.93 -0.42 1.28 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 27 H 0.13 1.94 7.39 -51.93 -0.38 1.56 16 28 H 0.12 1.35 8.01 -51.93 -0.42 0.94 16 29 H 0.16 1.28 8.04 -52.48 -0.42 0.86 16 30 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 32 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 34 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 LS Contribution 303.87 15.07 4.58 4.58 Total: -1.00 -32.59 303.87 -7.09 -39.67 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.14 Total: 0.99 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -2.48 Total: 7.22 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.20 Total: -43.31 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.18 Total: -23.83 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.59 -7.09 -39.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598042658.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.972 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds