Wall clock time and date at job start Mon Mar 30 2020 04:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00275 * 2 1 4 4 H 1.48502 * 109.47254 * 239.99826 * 3 2 1 5 5 H 1.48499 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46933 * 119.99909 * 3 2 1 7 7 C 1.37879 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.53497 * 114.20563 * 180.02562 * 9 7 2 11 11 N 1.47072 * 87.98316 * 220.14498 * 10 9 7 12 12 C 1.34771 * 136.05882 * 207.08476 * 11 10 9 13 13 O 1.21285 * 119.99668 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.46501 * 109.47128 * 180.02562 * 14 12 11 16 16 C 1.35761 * 119.62853 * 90.00373 * 15 14 12 17 17 C 1.35340 * 120.70516 * 179.97438 * 16 15 14 18 18 C 1.40195 * 119.94737 * 359.97438 * 17 16 15 19 19 C 1.36399 * 119.26494 * 0.02562 * 18 17 16 20 20 C 1.34660 * 119.62214 * 269.97444 * 15 14 12 21 21 O 1.22062 * 119.98499 * 359.97438 * 20 15 14 22 22 C 1.47068 * 87.88197 * 27.34137 * 11 10 9 23 23 H 0.97000 * 119.99322 * 359.97438 * 1 2 3 24 24 H 1.09003 * 113.27983 * 313.06041 * 9 7 2 25 25 H 1.08995 * 113.46849 * 105.36570 * 10 9 7 26 26 H 1.09001 * 113.51715 * 334.92926 * 10 9 7 27 27 H 1.09001 * 109.47010 * 59.99697 * 14 12 11 28 28 H 1.09003 * 109.47255 * 299.99973 * 14 12 11 29 29 H 1.08006 * 119.64635 * 359.97036 * 16 15 14 30 30 H 1.08000 * 120.02559 * 179.97438 * 17 16 15 31 31 H 1.08007 * 120.36668 * 179.72879 * 18 17 16 32 32 H 1.08003 * 120.34387 * 180.02562 * 19 18 17 33 33 H 1.09001 * 113.46958 * 87.44433 * 22 11 10 34 34 H 1.09010 * 113.46575 * 217.87800 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.1487 -3.7443 0.0018 11 7 1.2078 -4.3598 -0.9463 12 6 0.8325 -5.6145 -1.2647 13 8 1.3290 -6.5601 -0.6900 14 6 -0.2038 -5.8424 -2.3347 15 7 -0.4357 -7.2804 -2.4916 16 6 -1.3941 -7.8907 -1.7485 17 6 -1.6270 -9.2178 -1.8761 18 6 -0.8746 -9.9763 -2.7839 19 6 0.0879 -9.3614 -3.5296 20 6 0.3039 -7.9818 -3.3716 21 8 1.1612 -7.4188 -4.0332 22 6 0.8614 -3.0040 -1.3985 23 1 -0.4849 0.8401 0.0004 24 1 0.4432 -2.5303 0.7318 25 1 2.1869 -4.2509 0.9661 26 1 3.1377 -3.5678 -0.4210 27 1 0.1501 -5.4261 -3.2779 28 1 -1.1352 -5.3537 -2.0486 29 1 -1.9769 -7.3109 -1.0480 30 1 -2.3919 -9.6921 -1.2792 31 1 -1.0517 -11.0366 -2.8881 32 1 0.6776 -9.9289 -4.2344 33 1 1.5107 -2.6314 -2.1908 34 1 -0.1972 -2.8798 -1.6272 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598042658.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:19 Heat of formation + Delta-G solvation = -13.722937 kcal Electronic energy + Delta-G solvation = -19061.686145 eV Core-core repulsion = 15960.895919 eV Total energy + Delta-G solvation = -3100.790226 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.50650 -40.99807 -38.85726 -37.97342 -35.50034 -34.66906 -31.64327 -30.82672 -29.21735 -26.88601 -26.66481 -24.83319 -23.83391 -22.25856 -20.09636 -18.86597 -18.62559 -18.32755 -18.15661 -17.37231 -16.82977 -16.67689 -16.28405 -15.96020 -15.40005 -15.26963 -15.07706 -14.27696 -14.00342 -13.61038 -13.30632 -13.27986 -13.11662 -13.01900 -12.76660 -12.74374 -12.63526 -12.20033 -11.66788 -11.28665 -11.10521 -11.08067 -10.73864 -10.52603 -9.68010 -8.99670 -8.17700 -6.28058 -0.10051 0.91863 1.34298 1.43635 1.49115 1.50652 1.57361 2.01352 2.46148 2.69950 3.12412 3.35315 3.61454 3.74102 3.98253 4.10262 4.17009 4.21722 4.34637 4.36943 4.47341 4.51253 4.65668 4.77840 4.86989 4.98554 5.04320 5.17559 5.36770 5.58521 5.64647 5.80734 6.04991 6.22104 6.75881 6.79563 6.89861 6.98424 7.41786 8.91855 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.047571 B = 0.003936 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.447505 B = 7111.914978 C = 7204.563418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.027 3.973 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.028 3.972 10 C 0.104 3.896 11 N -0.641 5.641 12 C 0.517 3.483 13 O -0.590 6.590 14 C 0.083 3.917 15 N -0.482 5.482 16 C 0.127 3.873 17 C -0.225 4.225 18 C 0.011 3.989 19 C -0.281 4.281 20 C 0.494 3.506 21 O -0.615 6.615 22 C 0.109 3.891 23 H 0.266 0.734 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.162 0.838 29 H 0.192 0.808 30 H 0.188 0.812 31 H 0.176 0.824 32 H 0.149 0.851 33 H 0.078 0.922 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.433 -14.217 -3.487 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.081 0.919 9 C 0.009 3.991 10 C -0.018 4.018 11 N -0.374 5.374 12 C 0.307 3.693 13 O -0.472 6.472 14 C -0.042 4.042 15 N -0.190 5.190 16 C 0.001 3.999 17 C -0.247 4.247 18 C -0.011 4.011 19 C -0.303 4.303 20 C 0.300 3.700 21 O -0.504 6.504 22 C -0.013 4.013 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.138 0.862 28 H 0.180 0.820 29 H 0.209 0.791 30 H 0.205 0.795 31 H 0.193 0.807 32 H 0.166 0.834 33 H 0.096 0.904 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.873 -14.412 -3.660 16.825 hybrid contribution 0.792 1.087 -0.042 1.346 sum -7.081 -13.325 -3.702 15.537 Atomic orbital electron populations 1.70016 1.07171 1.27986 1.49972 1.25675 0.95591 1.02247 0.93906 0.85655 0.78418 0.78964 0.78894 1.19571 1.21053 1.19808 1.21168 0.93277 0.90648 1.52017 0.91917 1.20257 0.94570 0.91192 0.93065 1.23280 0.94447 0.92303 0.91813 1.49990 1.42338 1.04967 1.40108 1.20795 0.83946 0.80910 0.83688 1.90656 1.58969 1.41702 1.55826 1.21762 1.01339 0.81315 0.99804 1.45149 1.30669 1.09545 1.33657 1.22731 0.88544 0.96228 0.92369 1.21219 1.06470 0.91960 1.05070 1.21925 0.88581 1.02088 0.88506 1.22114 1.06796 0.92177 1.09199 1.17807 0.81782 0.90063 0.80367 1.90901 1.36441 1.72872 1.50148 1.23536 1.00756 0.76195 1.00836 0.92516 0.93286 0.92278 0.90447 0.86161 0.82021 0.79061 0.79513 0.80694 0.83352 0.90424 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.03 13.26 21.45 0.28 -47.74 16 2 C 0.03 1.35 5.46 84.65 0.46 1.81 16 3 Si 0.96 40.10 29.54 68.60 2.03 42.13 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.53 -26.53 8.83 25.60 0.23 -26.30 16 8 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.03 1.29 3.79 -11.12 -0.04 1.25 16 10 C 0.10 4.33 8.17 83.18 0.68 5.01 16 11 N -0.64 -25.43 3.69 -857.79 -3.16 -28.59 16 12 C 0.52 19.97 8.14 87.66 0.71 20.68 16 13 O -0.59 -26.89 17.21 -3.05 -0.05 -26.94 16 14 C 0.08 2.41 5.64 85.63 0.48 2.90 16 15 N -0.48 -13.64 2.07 -655.07 -1.36 -15.00 16 16 C 0.13 2.40 10.28 83.42 0.86 3.26 16 17 C -0.23 -3.18 10.01 22.08 0.22 -2.96 16 18 C 0.01 0.17 10.10 22.32 0.23 0.40 16 19 C -0.28 -7.17 9.99 22.40 0.22 -6.95 16 20 C 0.49 16.89 7.40 84.82 0.63 17.52 16 21 O -0.62 -26.88 16.64 -5.52 -0.09 -26.97 16 22 C 0.11 4.32 8.00 83.26 0.67 4.99 16 23 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 24 H 0.05 2.42 8.11 -2.39 -0.02 2.41 16 25 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 26 H 0.08 3.17 8.10 -2.39 -0.02 3.15 16 27 H 0.12 3.72 7.39 -2.39 -0.02 3.70 16 28 H 0.16 3.23 8.01 -2.39 -0.02 3.21 16 29 H 0.19 2.26 8.04 -2.91 -0.02 2.24 16 30 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 31 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.08 3.10 8.10 -2.39 -0.02 3.08 16 34 H 0.08 2.80 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -73.30 303.87 4.09 -69.21 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 1.10 Total: 12.30 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 5.34 Total: 21.61 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -4.24 Total: -91.34 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.14 Total: -53.91 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -73.30 4.09 -69.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598042658.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.489 kcal (2) G-P(sol) polarization free energy of solvation -73.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds