Wall clock time and date at job start Mon Mar 30 2020 04:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99538 * 2 1 4 4 H 1.48502 * 109.47091 * 240.00203 * 3 2 1 5 5 H 1.48497 * 109.47649 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46983 * 120.00613 * 3 2 1 7 7 C 1.37873 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00408 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47046 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47172 * 180.02562 * 11 10 9 13 13 S 1.65600 * 119.99871 * 165.00356 * 12 11 10 14 14 O 1.42101 * 104.27882 * 308.92501 * 13 12 11 15 15 O 1.42102 * 104.27187 * 181.06876 * 13 12 11 16 16 C 1.81399 * 104.45301 * 64.99838 * 13 12 11 17 17 H 1.09000 * 110.28308 * 62.87059 * 16 13 12 18 18 C 1.54259 * 110.32230 * 184.99815 * 16 13 12 19 19 C 1.54382 * 105.05956 * 118.89807 * 18 16 13 20 20 N 1.48566 * 104.59527 * 23.84937 * 19 18 16 21 21 C 1.48565 * 104.22236 * 320.51962 * 20 19 18 22 22 H 0.97000 * 119.99794 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46919 * 60.00313 * 9 7 2 24 24 H 1.08997 * 109.47598 * 300.00213 * 9 7 2 25 25 H 1.08999 * 109.46913 * 60.00351 * 10 9 7 26 26 H 1.08998 * 109.47382 * 299.99864 * 10 9 7 27 27 H 1.08997 * 109.47592 * 60.00155 * 11 10 9 28 28 H 1.08997 * 109.47726 * 300.00260 * 11 10 9 29 29 H 0.97002 * 119.99684 * 344.99815 * 12 11 10 30 30 H 1.09003 * 110.31889 * 237.78721 * 18 16 13 31 31 H 1.08991 * 110.32440 * 359.89733 * 18 16 13 32 32 H 1.08998 * 110.41463 * 142.62936 * 19 18 16 33 33 H 1.09002 * 110.40934 * 264.95759 * 19 18 16 34 34 H 1.00898 * 110.99861 * 200.96431 * 20 19 18 35 35 H 1.09000 * 110.40781 * 280.70281 * 21 20 19 36 36 H 1.08992 * 110.41079 * 158.26258 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0012 12 7 2.4325 -6.1006 -0.0018 13 16 1.9179 -7.6301 0.3698 14 8 1.2160 -7.4756 1.5956 15 8 3.0943 -8.4236 0.2942 16 6 0.7727 -8.0604 -0.9696 17 1 1.2987 -8.0825 -1.9240 18 6 0.1108 -9.4255 -0.6907 19 6 -1.4010 -9.1268 -0.5977 20 7 -1.5829 -7.8718 -1.3718 21 6 -0.3948 -7.0516 -1.0216 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5566 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.8727 -3.6046 0.8877 26 1 2.8714 -3.6039 -0.8922 27 1 0.8528 -5.0447 -0.8904 28 1 0.8547 -5.0450 0.8894 29 1 3.3643 -5.9419 -0.2199 30 1 0.3104 -10.1172 -1.5092 31 1 0.4754 -9.8379 0.2500 32 1 -1.9768 -9.9366 -1.0458 33 1 -1.6964 -8.9809 0.4413 34 1 -2.4364 -7.4038 -1.1062 35 1 -0.5324 -6.5789 -0.0491 36 1 -0.2130 -6.2989 -1.7888 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687254734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:24 Heat of formation + Delta-G solvation = -82.591829 kcal Electronic energy + Delta-G solvation = -18202.516422 eV Core-core repulsion = 15234.183768 eV Total energy + Delta-G solvation = -2968.332654 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.67766 -37.13881 -36.11816 -35.94591 -33.28201 -30.91825 -30.89285 -29.30496 -26.43635 -23.17290 -22.18747 -21.68284 -20.55208 -19.17536 -17.79707 -17.20117 -16.88202 -16.34946 -15.58896 -15.19898 -14.70782 -14.49238 -14.46245 -14.00871 -13.17323 -12.77134 -12.53717 -12.37306 -12.25054 -12.16539 -12.15664 -12.00425 -11.90924 -11.58355 -11.52524 -10.93653 -10.76310 -10.61823 -10.53928 -9.93925 -9.48895 -9.27288 -9.12988 -8.92394 -8.39364 -6.04819 -4.07473 0.18185 2.69347 3.31094 3.35788 3.38143 3.59943 3.84151 3.99903 4.07183 4.42264 4.47991 4.63243 4.85608 5.01393 5.16867 5.24836 5.31343 5.31848 5.45930 5.53861 5.58192 5.64780 5.86351 6.03231 6.28357 6.52643 6.72037 6.92240 6.96431 7.12179 7.58904 7.71595 7.93661 8.35686 8.98743 9.57006 11.06448 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031408 B = 0.004383 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.287158 B = 6387.333333 C = 7017.773701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.116 4.116 11 C 0.106 3.894 12 N -1.114 6.114 13 S 2.613 3.387 14 O -0.952 6.952 15 O -0.964 6.964 16 C -0.601 4.601 17 H 0.146 0.854 18 C -0.097 4.097 19 C 0.032 3.968 20 N -0.658 5.658 21 C 0.054 3.946 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.417 0.583 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.345 0.655 35 H 0.061 0.939 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 -17.624 -2.731 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.156 4.156 11 C -0.019 4.019 12 N -0.874 5.874 13 S 2.704 3.296 14 O -0.942 6.942 15 O -0.954 6.954 16 C -0.710 4.710 17 H 0.164 0.836 18 C -0.137 4.137 19 C -0.098 4.098 20 N -0.288 5.288 21 C -0.076 4.076 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.252 0.748 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.162 0.838 35 H 0.080 0.920 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.185 -18.293 -2.610 18.516 hybrid contribution 0.377 1.480 0.142 1.534 sum -0.808 -16.813 -2.469 17.012 Atomic orbital electron populations 1.69946 1.06050 1.26819 1.50596 1.25012 0.94860 0.99280 0.95211 0.86641 0.79571 0.83049 0.78632 1.20246 1.21277 1.20233 1.21171 0.93034 0.90944 1.50971 0.92665 1.19072 0.93926 0.91056 0.97559 1.21858 0.99651 0.92707 1.01343 1.21789 0.91558 0.87086 1.01440 1.55518 1.19447 1.24153 1.88324 1.04977 0.75006 0.73356 0.76225 1.93603 1.76156 1.85074 1.39340 1.93587 1.45022 1.69249 1.87567 1.31468 1.13708 1.04551 1.21316 0.83625 1.22007 0.95469 0.93656 1.02565 1.22971 0.95447 0.94206 0.97164 1.63742 1.04567 1.04983 1.55514 1.22898 0.88385 0.94414 1.01880 0.92882 0.96299 0.96229 0.92390 0.92514 0.91828 0.90628 0.74835 0.88922 0.91189 0.89264 0.93001 0.83827 0.92044 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.32 9.11 -34.45 -0.31 -14.63 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.12 -2.19 5.29 -26.73 -0.14 -2.33 16 11 C 0.11 1.61 4.69 -4.04 -0.02 1.59 16 12 N -1.11 -14.48 5.89 -10.61 -0.06 -14.55 16 13 S 2.61 33.63 4.77 -107.50 -0.51 33.12 16 14 O -0.95 -15.25 17.06 -57.54 -0.98 -16.23 16 15 O -0.96 -14.64 18.08 -57.54 -1.04 -15.68 16 16 C -0.60 -6.10 3.79 -25.35 -0.10 -6.20 16 17 H 0.15 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.10 -0.89 6.67 -25.35 -0.17 -1.06 16 19 C 0.03 0.28 7.47 -2.18 -0.02 0.27 16 20 N -0.66 -6.57 7.62 -109.65 -0.84 -7.41 16 21 C 0.05 0.58 5.25 -2.18 -0.01 0.57 16 22 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.85 5.70 -51.93 -0.30 0.55 16 28 H 0.08 1.19 7.50 -51.93 -0.39 0.80 16 29 H 0.42 4.88 8.62 -34.48 -0.30 4.59 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.59 7.64 -51.93 -0.40 0.20 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.35 2.97 8.92 -39.29 -0.35 2.62 16 35 H 0.06 0.69 6.45 -51.93 -0.34 0.36 16 36 H 0.10 1.07 6.95 -51.93 -0.36 0.71 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -33.77 303.24 -9.50 -43.27 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.35 Total: 2.03 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -1.00 Total: -19.88 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.16 Total: -47.41 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -2.02 Total: -31.92 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 33.63 SS G_CDS: -0.51 Total: 33.12 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.77 -9.50 -43.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687254734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.326 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds