Wall clock time and date at job start Mon Mar 30 2020 04:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99538 * 2 1 4 4 H 1.48502 * 109.47091 * 240.00203 * 3 2 1 5 5 H 1.48497 * 109.47649 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46983 * 120.00613 * 3 2 1 7 7 C 1.37873 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00408 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47046 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47172 * 180.02562 * 11 10 9 13 13 S 1.65600 * 119.99871 * 165.00356 * 12 11 10 14 14 O 1.42101 * 104.27882 * 308.92501 * 13 12 11 15 15 O 1.42102 * 104.27187 * 181.06876 * 13 12 11 16 16 C 1.81399 * 104.45301 * 64.99838 * 13 12 11 17 17 H 1.09000 * 110.28308 * 62.87059 * 16 13 12 18 18 C 1.54259 * 110.32230 * 184.99815 * 16 13 12 19 19 C 1.54382 * 105.05956 * 118.89807 * 18 16 13 20 20 N 1.48566 * 104.59527 * 23.84937 * 19 18 16 21 21 C 1.48565 * 104.22236 * 320.51962 * 20 19 18 22 22 H 0.97000 * 119.99794 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46919 * 60.00313 * 9 7 2 24 24 H 1.08997 * 109.47598 * 300.00213 * 9 7 2 25 25 H 1.08999 * 109.46913 * 60.00351 * 10 9 7 26 26 H 1.08998 * 109.47382 * 299.99864 * 10 9 7 27 27 H 1.08997 * 109.47592 * 60.00155 * 11 10 9 28 28 H 1.08997 * 109.47726 * 300.00260 * 11 10 9 29 29 H 0.97002 * 119.99684 * 344.99815 * 12 11 10 30 30 H 1.09003 * 110.31889 * 237.78721 * 18 16 13 31 31 H 1.08991 * 110.32440 * 359.89733 * 18 16 13 32 32 H 1.08998 * 110.41463 * 142.62936 * 19 18 16 33 33 H 1.09002 * 110.40934 * 264.95759 * 19 18 16 34 34 H 1.00898 * 110.99861 * 200.96431 * 20 19 18 35 35 H 1.09000 * 110.40781 * 280.70281 * 21 20 19 36 36 H 1.08992 * 110.41079 * 158.26258 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0012 12 7 2.4325 -6.1006 -0.0018 13 16 1.9179 -7.6301 0.3698 14 8 1.2160 -7.4756 1.5956 15 8 3.0943 -8.4236 0.2942 16 6 0.7727 -8.0604 -0.9696 17 1 1.2987 -8.0825 -1.9240 18 6 0.1108 -9.4255 -0.6907 19 6 -1.4010 -9.1268 -0.5977 20 7 -1.5829 -7.8718 -1.3718 21 6 -0.3948 -7.0516 -1.0216 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5566 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.8727 -3.6046 0.8877 26 1 2.8714 -3.6039 -0.8922 27 1 0.8528 -5.0447 -0.8904 28 1 0.8547 -5.0450 0.8894 29 1 3.3643 -5.9419 -0.2199 30 1 0.3104 -10.1172 -1.5092 31 1 0.4754 -9.8379 0.2500 32 1 -1.9768 -9.9366 -1.0458 33 1 -1.6964 -8.9809 0.4413 34 1 -2.4364 -7.4038 -1.1062 35 1 -0.5324 -6.5789 -0.0491 36 1 -0.2130 -6.2989 -1.7888 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687254734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:24 Heat of formation + Delta-G solvation = -110.671585 kcal Electronic energy + Delta-G solvation = -18203.734051 eV Core-core repulsion = 15234.183768 eV Total energy + Delta-G solvation = -2969.550284 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.46502 -38.26013 -37.42402 -37.12744 -35.17247 -32.64133 -31.68230 -30.06801 -28.20041 -24.83085 -23.12060 -22.51395 -22.05269 -20.24779 -18.78609 -18.54304 -18.15595 -17.69270 -16.67714 -16.44992 -16.26617 -15.90070 -15.57035 -14.91555 -14.28021 -14.10664 -13.98084 -13.72087 -13.40452 -13.29711 -13.23544 -13.17167 -12.94207 -12.80737 -12.73866 -12.51809 -12.35390 -12.23013 -11.73455 -11.43482 -11.33586 -11.14080 -10.51475 -10.37151 -9.68966 -8.17580 -6.27502 -0.84069 1.42801 1.44732 1.52477 1.64206 2.43382 2.63614 2.93954 3.16454 3.20551 3.30250 3.56548 3.92640 4.00533 4.08230 4.24371 4.27033 4.45450 4.51887 4.59195 4.64816 4.75497 4.86806 4.96115 4.99475 5.19993 5.23486 5.53130 5.55837 5.77657 5.88476 6.06503 6.25972 6.27917 6.89169 7.41499 8.93769 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031408 B = 0.004383 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.287158 B = 6387.333333 C = 7017.773701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.116 3.884 12 N -1.112 6.112 13 S 2.622 3.378 14 O -0.989 6.989 15 O -0.987 6.987 16 C -0.580 4.580 17 H 0.171 0.829 18 C -0.108 4.108 19 C 0.027 3.973 20 N -0.663 5.663 21 C 0.045 3.955 22 H 0.263 0.737 23 H 0.005 0.995 24 H -0.006 1.006 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.424 0.576 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.352 0.648 35 H 0.051 0.949 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.803 -18.278 -3.870 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.010 4.010 12 N -0.872 5.872 13 S 2.717 3.283 14 O -0.979 6.979 15 O -0.978 6.978 16 C -0.693 4.693 17 H 0.188 0.812 18 C -0.147 4.147 19 C -0.102 4.102 20 N -0.293 5.293 21 C -0.085 4.085 22 H 0.072 0.928 23 H 0.024 0.976 24 H 0.012 0.988 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.259 0.741 30 H 0.133 0.867 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.068 0.932 34 H 0.169 0.831 35 H 0.070 0.930 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.641 -18.945 -3.721 19.318 hybrid contribution 0.166 1.625 0.477 1.702 sum -0.475 -17.320 -3.243 17.628 Atomic orbital electron populations 1.70071 1.07626 1.27755 1.51666 1.25904 0.95726 1.03101 0.94854 0.85572 0.78320 0.78510 0.79066 1.19129 1.20987 1.19565 1.21671 0.93595 0.92440 1.50505 0.92213 1.18985 0.94461 0.92524 0.95607 1.21638 0.98603 0.92601 1.01720 1.21559 0.91421 0.85899 1.02146 1.55316 1.19667 1.23717 1.88498 1.04576 0.74696 0.72687 0.76309 1.93555 1.76612 1.85386 1.42356 1.93554 1.46609 1.69486 1.88102 1.31263 1.12601 1.05181 1.20264 0.81154 1.22223 0.95485 0.93264 1.03741 1.23095 0.95597 0.94296 0.97237 1.63775 1.04534 1.05269 1.55723 1.22975 0.89076 0.94857 1.01624 0.92816 0.97647 0.98753 0.92875 0.91244 0.89675 0.91634 0.74059 0.86749 0.90821 0.87336 0.93209 0.83149 0.93035 0.87198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.54 -29.89 9.11 25.60 0.23 -29.66 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.10 4.97 29.85 0.15 1.24 16 10 C -0.11 -3.96 5.29 30.59 0.16 -3.80 16 11 C 0.12 3.42 4.69 86.38 0.41 3.83 16 12 N -1.11 -27.72 5.89 -187.49 -1.10 -28.82 16 13 S 2.62 64.99 4.77 -56.49 -0.27 64.72 16 14 O -0.99 -31.68 17.06 -127.65 -2.18 -33.85 16 15 O -0.99 -28.98 18.08 -127.65 -2.31 -31.28 16 16 C -0.58 -10.47 3.79 31.49 0.12 -10.35 16 17 H 0.17 2.30 8.14 -2.39 -0.02 2.28 16 18 C -0.11 -1.69 6.67 31.49 0.21 -1.48 16 19 C 0.03 0.42 7.47 86.45 0.65 1.07 16 20 N -0.66 -11.90 7.62 -500.83 -3.82 -15.72 16 21 C 0.04 0.89 5.25 86.45 0.45 1.34 16 22 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 23 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 24 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 27 H 0.09 2.16 5.70 -2.39 -0.01 2.14 16 28 H 0.07 2.08 7.50 -2.39 -0.02 2.07 16 29 H 0.42 9.38 8.62 -96.74 -0.83 8.55 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.11 7.64 -2.39 -0.02 1.10 16 32 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.35 5.54 8.92 -89.70 -0.80 4.74 16 35 H 0.05 1.13 6.45 -2.39 -0.02 1.11 16 36 H 0.11 2.04 6.95 -2.39 -0.02 2.02 16 Total: -1.00 -71.75 303.24 -5.07 -76.82 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -0.54 Total: 14.84 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 2.84 Total: -37.23 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -4.64 Total: -99.39 kcal Atomic # 8 Polarization: -60.65 SS G_CDS: -4.48 Total: -65.14 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 64.99 SS G_CDS: -0.27 Total: 64.72 kcal Total: -71.75 -5.07 -76.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687254734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.851 kcal (2) G-P(sol) polarization free energy of solvation -71.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds