Wall clock time and date at job start Mon Mar 30 2020 04:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48530 * 111.00231 * 2 1 4 4 C 1.54931 * 103.23165 * 200.27874 * 3 2 1 5 5 H 1.09007 * 110.87847 * 278.98777 * 4 3 2 6 6 N 1.46499 * 110.72849 * 155.77020 * 4 3 2 7 7 S 1.65602 * 119.99866 * 101.49936 * 6 4 3 8 8 O 1.42100 * 106.40345 * 311.45913 * 7 6 4 9 9 O 1.42104 * 106.40275 * 178.54230 * 7 6 4 10 10 C 1.76192 * 107.21927 * 65.00268 * 7 6 4 11 11 H 1.08000 * 120.00436 * 0.02562 * 10 7 6 12 12 C 1.37885 * 120.00029 * 179.97438 * 10 7 6 13 13 N 1.31518 * 119.99792 * 179.72300 * 12 10 7 14 14 Si 1.86795 * 120.00009 * 0.02562 * 12 10 7 15 15 H 1.48501 * 109.47088 * 89.99795 * 14 12 10 16 16 H 1.48495 * 109.47293 * 209.99997 * 14 12 10 17 17 H 1.48507 * 109.47015 * 329.99955 * 14 12 10 18 18 C 1.54595 * 102.92069 * 37.41231 * 4 3 2 19 19 C 1.47903 * 111.00290 * 242.60596 * 2 1 3 20 20 C 1.53002 * 109.91594 * 26.48562 * 19 2 1 21 21 C 1.53002 * 110.07925 * 265.29215 * 19 2 1 22 22 H 1.09000 * 109.47203 * 177.39564 * 1 2 3 23 23 H 1.08999 * 109.47379 * 297.39675 * 1 2 3 24 24 H 1.08998 * 109.46916 * 57.39465 * 1 2 3 25 25 H 1.09003 * 110.67043 * 81.84442 * 3 2 1 26 26 H 1.08999 * 110.66783 * 318.71630 * 3 2 1 27 27 H 0.97002 * 120.00235 * 281.50536 * 6 4 3 28 28 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 29 29 H 1.09007 * 110.30752 * 96.96100 * 18 4 3 30 30 H 1.08998 * 110.31280 * 219.02583 * 18 4 3 31 31 H 1.08997 * 109.46931 * 177.59224 * 20 19 2 32 32 H 1.09001 * 109.47381 * 297.59701 * 20 19 2 33 33 H 1.09001 * 109.46767 * 57.59945 * 20 19 2 34 34 H 1.09005 * 109.46683 * 302.30516 * 21 19 2 35 35 H 1.08996 * 109.47706 * 62.30514 * 21 19 2 36 36 H 1.08997 * 109.47178 * 182.30930 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4491 1.2107 -0.5227 5 1 4.1140 0.8847 0.2772 6 7 3.9372 2.4532 -1.1260 7 16 4.9630 3.4384 -0.2776 8 8 4.3856 3.6053 1.0100 9 8 5.2757 4.5267 -1.1362 10 6 6.4635 2.5465 -0.0382 11 1 6.5640 1.5441 -0.4274 12 6 7.5101 3.1287 0.6452 13 7 8.6281 2.4609 0.8286 14 14 7.3367 4.8627 1.3177 15 1 6.7927 4.8061 2.6984 16 1 8.6673 5.5217 1.3366 17 1 6.4122 5.6390 0.4529 18 6 3.2983 0.1054 -1.5930 19 6 1.9991 -0.6353 -1.2259 20 6 0.9839 -0.5019 -2.3628 21 6 2.2974 -2.1131 -0.9648 22 1 -0.3633 -1.0266 -0.0467 23 1 -0.3634 0.4729 0.9124 24 1 -0.3633 0.5538 -0.8657 25 1 2.0041 1.7977 1.0095 26 1 1.4237 2.0204 -0.6729 27 1 3.6595 2.6990 -2.0223 28 1 9.3645 2.8707 1.3090 29 1 3.2136 0.5486 -2.5853 30 1 4.1479 -0.5764 -1.5552 31 1 1.3990 -0.9343 -3.2732 32 1 0.0677 -1.0284 -2.0955 33 1 0.7618 0.5521 -2.5297 34 1 3.0061 -2.2006 -0.1412 35 1 1.3736 -2.6301 -0.7058 36 1 2.7255 -2.5612 -1.8615 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694119211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:57 Heat of formation + Delta-G solvation = -101.680567 kcal Electronic energy + Delta-G solvation = -19005.683506 eV Core-core repulsion = 16036.523102 eV Total energy + Delta-G solvation = -2969.160404 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87003 -37.67656 -36.48770 -36.01049 -35.17897 -33.27607 -30.89740 -28.56260 -28.18742 -26.63444 -25.36064 -22.25454 -21.19385 -19.81485 -19.39267 -18.70160 -17.54990 -17.10236 -16.45454 -16.03556 -15.70549 -15.42315 -15.02142 -14.91470 -14.83670 -14.11821 -14.02569 -13.64624 -13.45597 -13.35657 -13.03050 -12.79838 -12.69703 -12.58139 -12.56139 -12.51668 -12.17940 -12.08505 -11.82388 -11.73115 -11.41657 -11.33434 -11.16343 -10.27162 -9.32285 -8.96208 -7.51875 0.14210 1.05051 1.14760 1.21549 1.89273 2.41241 2.50422 3.08247 3.31177 3.59096 3.69767 3.97517 4.12401 4.17206 4.32827 4.37560 4.49024 4.54227 4.65986 4.68116 4.79029 4.88061 4.98697 5.01659 5.02994 5.08081 5.16000 5.25095 5.29924 5.40166 5.51974 5.96705 6.02193 6.18332 6.30210 6.54288 8.21432 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.035081 B = 0.006274 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.964725 B = 4461.466070 C = 4701.949874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.523 5.523 3 C 0.024 3.976 4 C 0.146 3.854 5 H 0.081 0.919 6 N -1.099 6.099 7 S 2.698 3.302 8 O -1.026 7.026 9 O -1.030 7.030 10 C -1.037 5.037 11 H 0.107 0.893 12 C 0.108 3.892 13 N -0.853 5.853 14 Si 0.825 3.175 15 H -0.239 1.239 16 H -0.220 1.220 17 H -0.229 1.229 18 C -0.128 4.128 19 C 0.084 3.916 20 C -0.163 4.163 21 C -0.126 4.126 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.420 0.580 28 H 0.291 0.709 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.770 -7.054 -5.491 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.248 5.248 3 C -0.106 4.106 4 C 0.038 3.962 5 H 0.100 0.900 6 N -0.858 5.858 7 S 2.798 3.202 8 O -1.016 7.016 9 O -1.020 7.020 10 C -1.169 5.169 11 H 0.125 0.875 12 C -0.108 4.108 13 N -0.483 5.483 14 Si 0.642 3.358 15 H -0.163 1.163 16 H -0.142 1.142 17 H -0.151 1.151 18 C -0.167 4.167 19 C -0.006 4.006 20 C -0.221 4.221 21 C -0.184 4.184 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.255 0.745 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.572 -6.547 -4.478 16.591 hybrid contribution 0.551 0.636 -0.626 1.048 sum -14.021 -5.912 -5.104 16.049 Atomic orbital electron populations 1.22620 0.86673 1.02835 1.01349 1.64778 1.09536 1.13574 1.36892 1.23607 0.94620 0.90842 1.01488 1.21613 0.95110 0.83538 0.95986 0.90045 1.55057 1.64645 1.36147 1.29956 1.00506 0.74449 0.72694 0.72578 1.93389 1.79301 1.86525 1.42378 1.93437 1.85712 1.54478 1.68356 1.30973 1.19923 1.16795 1.49238 0.87515 1.25161 0.93803 1.00431 0.91452 1.70015 1.04336 1.38932 1.35067 0.87495 0.83785 0.81527 0.83026 1.16281 1.14220 1.15140 1.22920 0.98326 0.96728 0.98744 1.21904 0.93678 0.95887 0.89136 1.22394 0.99477 1.01892 0.98339 1.21744 1.01912 0.92879 1.01841 0.89889 0.91615 0.93953 0.90734 0.92174 0.74469 0.89861 0.89096 0.90128 0.90813 0.90725 0.92913 0.93238 0.91753 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 8.32 127.69 1.06 1.32 16 2 N -0.52 -13.19 5.18 -859.97 -4.46 -17.65 16 3 C 0.02 0.73 6.23 86.65 0.54 1.27 16 4 C 0.15 4.91 3.61 46.19 0.17 5.08 16 5 H 0.08 3.17 7.99 -2.38 -0.02 3.15 16 6 N -1.10 -40.46 5.59 -164.39 -0.92 -41.38 16 7 S 2.70 133.03 4.16 -56.49 -0.23 132.80 16 8 O -1.03 -54.13 16.59 -128.00 -2.12 -56.25 16 9 O -1.03 -54.47 16.02 -128.00 -2.05 -56.52 16 10 C -1.04 -58.38 10.24 67.74 0.69 -57.69 16 11 H 0.11 6.13 8.06 -2.91 -0.02 6.11 16 12 C 0.11 6.26 5.47 84.66 0.46 6.72 16 13 N -0.85 -49.69 13.96 21.45 0.30 -49.39 16 14 Si 0.82 41.39 26.54 68.60 1.82 43.21 16 15 H -0.24 -11.68 7.11 99.48 0.71 -10.98 16 16 H -0.22 -9.73 7.11 99.48 0.71 -9.03 16 17 H -0.23 -11.78 5.61 99.48 0.56 -11.22 16 18 C -0.13 -3.31 5.94 31.47 0.19 -3.12 16 19 C 0.08 1.83 0.89 3.67 0.00 1.83 16 20 C -0.16 -2.70 6.97 71.98 0.50 -2.20 16 21 C -0.13 -2.46 8.64 71.98 0.62 -1.84 16 22 H 0.08 1.31 7.75 -2.39 -0.02 1.30 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.04 0.73 6.27 -2.39 -0.01 0.71 16 25 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.06 1.63 7.96 -2.39 -0.02 1.61 16 27 H 0.42 12.72 8.67 -96.74 -0.84 11.89 16 28 H 0.29 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.09 2.05 7.39 -2.38 -0.02 2.04 16 30 H 0.08 2.11 7.69 -2.39 -0.02 2.09 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.05 6.69 -2.39 -0.02 1.03 16 33 H 0.05 0.92 7.59 -2.39 -0.02 0.90 16 34 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -68.26 297.37 -3.34 -71.61 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.08 Total: 22.20 kcal Atomic # 6 Polarization: -52.88 SS G_CDS: 4.24 Total: -48.64 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -5.07 Total: -108.41 kcal Atomic # 8 Polarization: -108.60 SS G_CDS: -4.17 Total: -112.78 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.82 Total: 43.21 kcal Atomic # 16 Polarization: 133.03 SS G_CDS: -0.23 Total: 132.80 kcal Total: -68.26 -3.34 -71.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694119211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.071 kcal (2) G-P(sol) polarization free energy of solvation -68.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds