Wall clock time and date at job start Mon Mar 30 2020 04:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31007 * 1 3 3 Si 1.86805 * 119.99661 * 2 1 4 4 H 1.48506 * 109.46872 * 240.00329 * 3 2 1 5 5 H 1.48503 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46938 * 120.00331 * 3 2 1 7 7 C 1.39588 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99939 * 179.97438 * 7 2 1 9 9 N 1.36116 * 119.99685 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99548 * 180.02562 * 9 7 2 11 11 O 1.21498 * 120.00314 * 359.97438 * 10 9 7 12 12 C 1.48837 * 119.99803 * 180.02562 * 10 9 7 13 13 O 1.21439 * 120.00070 * 359.97438 * 12 10 9 14 14 N 1.34771 * 119.99629 * 179.97438 * 12 10 9 15 15 C 1.46505 * 119.99622 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 14 18 18 H 1.09004 * 115.55189 * 330.67089 * 17 16 15 19 19 C 1.52997 * 117.50304 * 184.99785 * 17 16 15 20 20 C 1.52997 * 60.00156 * 252.51046 * 19 17 16 21 21 F 1.39899 * 117.49882 * 252.50427 * 20 19 17 22 22 F 1.39903 * 117.49592 * 107.49141 * 20 19 17 23 23 H 0.96996 * 120.00966 * 359.97438 * 1 2 3 24 24 H 0.96995 * 120.00441 * 359.97438 * 9 7 2 25 25 H 0.96996 * 120.00772 * 359.97438 * 14 12 10 26 26 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 27 27 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 28 28 H 1.09002 * 109.47153 * 300.00008 * 16 15 14 29 29 H 1.08998 * 109.47533 * 59.99637 * 16 15 14 30 30 H 1.09007 * 117.49908 * 0.02562 * 19 17 16 31 31 H 1.09002 * 117.50106 * 145.01785 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 3.0977 1.6965 -1.2126 5 1 1.2789 2.7465 0.0006 6 1 3.0977 1.6965 1.2124 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2087 -0.0010 9 7 1.3275 -2.3876 -0.0005 10 6 2.0015 -3.5548 -0.0005 11 8 3.2165 -3.5548 -0.0010 12 6 1.2574 -4.8438 -0.0011 13 8 0.0430 -4.8439 -0.0011 14 7 1.9314 -6.0109 -0.0016 15 6 1.1989 -7.2797 -0.0016 16 6 2.1932 -8.4425 -0.0029 17 6 1.4284 -9.7676 -0.0023 18 1 0.4513 -9.7462 0.4805 19 6 2.2461 -11.0553 0.1148 20 6 1.5960 -10.6806 -1.2185 21 9 0.4834 -11.4244 -1.6262 22 9 2.4370 -10.2401 -2.2460 23 1 -0.4851 0.8399 0.0004 24 1 0.3576 -2.3877 0.0002 25 1 2.9013 -6.0109 -0.0020 26 1 0.5726 -7.3377 0.8886 27 1 0.5719 -7.3373 -0.8914 28 1 2.8192 -8.3844 -0.8934 29 1 2.8206 -8.3852 0.8865 30 1 3.3292 -10.9586 0.1919 31 1 1.8070 -11.8813 0.6744 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702010203.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:15 Heat of formation + Delta-G solvation = -150.077408 kcal Electronic energy + Delta-G solvation = -18772.752633 eV Core-core repulsion = 15111.820104 eV Total energy + Delta-G solvation = -3660.932530 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.092 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.91448 -47.59546 -39.52327 -37.67446 -37.02472 -34.82188 -34.01307 -31.44423 -30.25510 -26.03520 -24.27949 -22.90214 -22.03625 -21.27665 -19.41869 -18.36832 -18.01945 -17.06831 -16.93928 -16.25037 -15.83736 -15.34495 -14.97222 -14.46439 -14.28619 -14.20782 -14.00632 -13.85763 -13.79691 -13.53540 -12.81184 -12.65538 -12.28076 -12.03220 -11.77523 -11.58567 -11.18265 -10.98871 -10.59217 -10.46132 -10.36379 -10.16113 -9.71970 -8.79917 -8.29669 -8.23889 -6.68183 -4.00605 2.43040 2.72315 2.75193 3.14227 3.16844 3.17183 3.30839 3.88679 3.99285 4.09132 4.26719 4.31414 4.64629 4.96995 4.98876 5.06156 5.11089 5.18062 5.26864 5.37800 5.58008 5.84596 5.90976 6.06233 6.71935 7.29690 7.66040 7.84668 8.30947 8.59902 8.94566 9.30346 9.83689 10.46574 Molecular weight = 262.09amu Principal moments of inertia in cm(-1) A = 0.054657 B = 0.003177 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.158736 B = 8810.640299 C = 8993.193553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.031 3.969 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.112 0.888 9 N -0.498 5.498 10 C 0.393 3.607 11 O -0.599 6.599 12 C 0.514 3.486 13 O -0.546 6.546 14 N -0.716 5.716 15 C 0.123 3.877 16 C -0.110 4.110 17 C -0.141 4.141 18 H 0.135 0.865 19 C -0.172 4.172 20 C 0.191 3.809 21 F -0.162 7.162 22 F -0.158 7.158 23 H 0.281 0.719 24 H 0.405 0.595 25 H 0.410 0.590 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.607 -18.377 1.046 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.438 4.438 8 H 0.130 0.870 9 N -0.132 5.132 10 C 0.177 3.823 11 O -0.487 6.487 12 C 0.298 3.702 13 O -0.423 6.423 14 N -0.371 5.371 15 C -0.001 4.001 16 C -0.147 4.147 17 C -0.160 4.160 18 H 0.153 0.847 19 C -0.209 4.209 20 C 0.154 3.846 21 F -0.143 7.143 22 F -0.138 7.138 23 H 0.092 0.908 24 H 0.240 0.760 25 H 0.246 0.754 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.142 0.858 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.328 -18.232 0.992 18.407 hybrid contribution 0.108 0.601 -0.275 0.670 sum 2.436 -17.631 0.716 17.813 Atomic orbital electron populations 1.69470 1.06534 1.29518 1.45119 1.25593 0.95628 1.00495 0.95843 0.85772 0.78875 0.79281 0.79528 1.19347 1.20581 1.19361 1.19845 0.93980 0.81895 1.48041 0.86987 1.41558 1.10501 1.04227 1.56911 1.18936 0.87812 0.84198 0.91327 1.90576 1.12867 1.86608 1.58677 1.20694 0.87488 0.85890 0.76119 1.90692 1.14079 1.88116 1.49402 1.45613 1.11148 1.04592 1.75740 1.21253 0.94306 0.81918 1.02671 1.21421 0.98130 0.90665 1.04530 1.23619 1.02924 0.92646 0.96825 0.84671 1.24396 1.02309 0.99419 0.94812 1.20124 0.83593 0.99627 0.81213 1.93030 1.52076 1.77088 1.92081 1.93025 1.69984 1.89375 1.61444 0.90822 0.75980 0.75384 0.91198 0.91375 0.89706 0.89199 0.85829 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.23 13.03 55.53 0.72 -22.51 16 2 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 3 Si 0.94 19.99 29.56 -169.99 -5.02 14.97 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.31 -8.45 9.67 -15.15 -0.15 -8.59 16 8 H 0.11 3.13 7.15 -52.49 -0.38 2.76 16 9 N -0.50 -13.31 5.25 -11.59 -0.06 -13.37 16 10 C 0.39 9.87 7.82 -11.87 -0.09 9.77 16 11 O -0.60 -15.92 16.03 5.37 0.09 -15.83 16 12 C 0.51 11.07 7.87 -11.88 -0.09 10.97 16 13 O -0.55 -12.75 16.47 5.42 0.09 -12.67 16 14 N -0.72 -11.81 5.55 -60.93 -0.34 -12.15 16 15 C 0.12 1.55 5.63 -4.04 -0.02 1.53 16 16 C -0.11 -0.98 5.59 -26.74 -0.15 -1.13 16 17 C -0.14 -1.07 5.72 -90.63 -0.52 -1.59 16 18 H 0.14 0.90 8.08 -51.93 -0.42 0.48 16 19 C -0.17 -1.02 10.22 -26.73 -0.27 -1.30 16 20 C 0.19 1.77 5.20 -26.73 -0.14 1.64 16 21 F -0.16 -1.74 17.60 2.25 0.04 -1.70 16 22 F -0.16 -1.77 16.48 2.25 0.04 -1.73 16 23 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 24 H 0.40 10.90 7.35 -40.82 -0.30 10.60 16 25 H 0.41 6.28 7.93 -40.82 -0.32 5.95 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 0.80 7.06 -51.93 -0.37 0.43 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 291.08 15.07 4.39 4.39 Total: -1.00 -31.48 291.08 -4.63 -36.11 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -3.03 Total: 12.47 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -1.53 Total: 12.02 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.32 Total: -48.03 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: 0.18 Total: -28.50 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.44 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.48 -4.63 -36.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702010203.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.968 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds