Wall clock time and date at job start Mon Mar 30 2020 04:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31007 * 1 3 3 Si 1.86805 * 119.99661 * 2 1 4 4 H 1.48506 * 109.46872 * 240.00329 * 3 2 1 5 5 H 1.48503 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46938 * 120.00331 * 3 2 1 7 7 C 1.39588 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99939 * 179.97438 * 7 2 1 9 9 N 1.36116 * 119.99685 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99548 * 180.02562 * 9 7 2 11 11 O 1.21498 * 120.00314 * 359.97438 * 10 9 7 12 12 C 1.48837 * 119.99803 * 180.02562 * 10 9 7 13 13 O 1.21439 * 120.00070 * 359.97438 * 12 10 9 14 14 N 1.34771 * 119.99629 * 179.97438 * 12 10 9 15 15 C 1.46505 * 119.99622 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 14 18 18 H 1.09004 * 115.55189 * 330.67089 * 17 16 15 19 19 C 1.52997 * 117.50304 * 184.99785 * 17 16 15 20 20 C 1.52997 * 60.00156 * 252.51046 * 19 17 16 21 21 F 1.39899 * 117.49882 * 252.50427 * 20 19 17 22 22 F 1.39903 * 117.49592 * 107.49141 * 20 19 17 23 23 H 0.96996 * 120.00966 * 359.97438 * 1 2 3 24 24 H 0.96995 * 120.00441 * 359.97438 * 9 7 2 25 25 H 0.96996 * 120.00772 * 359.97438 * 14 12 10 26 26 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 27 27 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 28 28 H 1.09002 * 109.47153 * 300.00008 * 16 15 14 29 29 H 1.08998 * 109.47533 * 59.99637 * 16 15 14 30 30 H 1.09007 * 117.49908 * 0.02562 * 19 17 16 31 31 H 1.09002 * 117.50106 * 145.01785 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 3.0977 1.6965 -1.2126 5 1 1.2789 2.7465 0.0006 6 1 3.0977 1.6965 1.2124 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2087 -0.0010 9 7 1.3275 -2.3876 -0.0005 10 6 2.0015 -3.5548 -0.0005 11 8 3.2165 -3.5548 -0.0010 12 6 1.2574 -4.8438 -0.0011 13 8 0.0430 -4.8439 -0.0011 14 7 1.9314 -6.0109 -0.0016 15 6 1.1989 -7.2797 -0.0016 16 6 2.1932 -8.4425 -0.0029 17 6 1.4284 -9.7676 -0.0023 18 1 0.4513 -9.7462 0.4805 19 6 2.2461 -11.0553 0.1148 20 6 1.5960 -10.6806 -1.2185 21 9 0.4834 -11.4244 -1.6262 22 9 2.4370 -10.2401 -2.2460 23 1 -0.4851 0.8399 0.0004 24 1 0.3576 -2.3877 0.0002 25 1 2.9013 -6.0109 -0.0020 26 1 0.5726 -7.3377 0.8886 27 1 0.5719 -7.3373 -0.8914 28 1 2.8192 -8.3844 -0.8934 29 1 2.8206 -8.3852 0.8865 30 1 3.3292 -10.9586 0.1919 31 1 1.8070 -11.8813 0.6744 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702010203.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:14 Heat of formation + Delta-G solvation = -173.184185 kcal Electronic energy + Delta-G solvation = -18773.754618 eV Core-core repulsion = 15111.820104 eV Total energy + Delta-G solvation = -3661.934515 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.092 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.64270 -48.34678 -41.28681 -39.23461 -38.12599 -36.50834 -35.66261 -33.46385 -31.35942 -27.92561 -25.69410 -23.55447 -23.45657 -22.07528 -21.04936 -20.35365 -18.97510 -18.53546 -17.91318 -17.49165 -17.00068 -16.83300 -16.64307 -16.02205 -15.72890 -15.50345 -15.01399 -14.86285 -14.64565 -14.54321 -14.32838 -14.22520 -13.66102 -13.17264 -12.96203 -12.79939 -12.59180 -12.46623 -12.26732 -12.11659 -11.66947 -11.65223 -10.79518 -10.28426 -10.24952 -10.21823 -8.65815 -6.10967 0.60000 1.41518 1.49752 1.54384 1.80064 2.09877 2.19233 2.29700 2.37466 3.15618 3.16429 3.32864 3.45764 3.66299 3.91980 4.05245 4.14120 4.26556 4.48625 4.68363 4.74539 4.88061 4.97199 5.12938 5.25061 5.30224 5.67854 6.15633 6.38770 6.81331 7.01729 7.27975 7.79764 8.49802 Molecular weight = 262.09amu Principal moments of inertia in cm(-1) A = 0.054657 B = 0.003177 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.158736 B = 8810.640299 C = 8993.193553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.010 2.990 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.511 5.511 10 C 0.388 3.612 11 O -0.616 6.616 12 C 0.518 3.482 13 O -0.567 6.567 14 N -0.694 5.694 15 C 0.118 3.882 16 C -0.100 4.100 17 C -0.139 4.139 18 H 0.146 0.854 19 C -0.137 4.137 20 C 0.154 3.846 21 F -0.177 7.177 22 F -0.175 7.175 23 H 0.289 0.711 24 H 0.401 0.599 25 H 0.418 0.582 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.140 0.860 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.384 -19.165 1.891 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.831 3.169 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.477 4.477 8 H 0.118 0.882 9 N -0.145 5.145 10 C 0.173 3.827 11 O -0.506 6.506 12 C 0.301 3.699 13 O -0.447 6.447 14 N -0.347 5.347 15 C -0.005 4.005 16 C -0.137 4.137 17 C -0.158 4.158 18 H 0.164 0.836 19 C -0.175 4.175 20 C 0.118 3.882 21 F -0.157 7.157 22 F -0.156 7.156 23 H 0.099 0.901 24 H 0.235 0.765 25 H 0.255 0.745 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.130 0.870 30 H 0.158 0.842 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.120 -19.068 1.836 19.409 hybrid contribution -0.136 0.718 -0.546 0.912 sum 2.984 -18.350 1.291 18.636 Atomic orbital electron populations 1.69538 1.07860 1.30917 1.45073 1.26551 0.96495 1.03515 0.94331 0.84748 0.77743 0.74729 0.79679 1.18865 1.19159 1.18741 1.19965 0.93747 0.83092 1.50891 0.88221 1.41657 1.10242 1.04828 1.57737 1.19631 0.87894 0.85264 0.89871 1.90543 1.13750 1.87287 1.59033 1.20064 0.86983 0.86020 0.76845 1.90685 1.14649 1.88344 1.50983 1.45589 1.11644 1.04466 1.73002 1.21550 0.95177 0.81106 1.02659 1.21346 0.97322 0.89610 1.05437 1.23631 1.03873 0.92527 0.95789 0.83579 1.24558 1.03131 0.98557 0.91217 1.20699 0.84151 1.01657 0.81702 1.92992 1.52939 1.77473 1.92321 1.92980 1.70437 1.89734 1.62454 0.90072 0.76490 0.74483 0.90341 0.92251 0.90103 0.87004 0.84183 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.21 13.03 21.76 0.28 -47.92 16 2 C 0.00 -0.24 5.51 85.14 0.47 0.23 16 3 Si 1.01 40.56 29.56 68.60 2.03 42.59 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.35 -19.51 9.67 84.35 0.82 -18.69 16 8 H 0.10 5.72 7.15 -2.91 -0.02 5.70 16 9 N -0.51 -28.04 5.25 -308.87 -1.62 -29.66 16 10 C 0.39 19.80 7.82 87.08 0.68 20.48 16 11 O -0.62 -33.09 16.03 -3.71 -0.06 -33.15 16 12 C 0.52 22.28 7.87 87.08 0.69 22.97 16 13 O -0.57 -26.59 16.47 -3.52 -0.06 -26.65 16 14 N -0.69 -22.07 5.55 -465.00 -2.58 -24.64 16 15 C 0.12 2.79 5.63 86.38 0.49 3.27 16 16 C -0.10 -1.52 5.59 30.59 0.17 -1.35 16 17 C -0.14 -1.75 5.72 -10.80 -0.06 -1.81 16 18 H 0.15 1.54 8.08 -2.39 -0.02 1.52 16 19 C -0.14 -1.17 10.22 30.59 0.31 -0.85 16 20 C 0.15 2.63 5.20 30.59 0.16 2.79 16 21 F -0.18 -3.66 17.60 44.97 0.79 -2.87 16 22 F -0.18 -3.82 16.48 44.97 0.74 -3.08 16 23 H 0.29 14.25 8.30 -92.71 -0.77 13.49 16 24 H 0.40 22.26 7.35 -92.71 -0.68 21.58 16 25 H 0.42 12.16 7.93 -92.71 -0.74 11.43 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.35 7.06 -2.39 -0.02 1.34 16 29 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.14 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -68.97 291.08 3.03 -65.95 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -0.22 Total: 32.40 kcal Atomic # 6 Polarization: 23.31 SS G_CDS: 3.72 Total: 27.03 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -3.92 Total: -102.23 kcal Atomic # 8 Polarization: -59.68 SS G_CDS: -0.12 Total: -59.80 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 1.53 Total: -5.95 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -68.97 3.03 -65.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702010203.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.235 kcal (2) G-P(sol) polarization free energy of solvation -68.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds