Wall clock time and date at job start Mon Mar 30 2020 04:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00451 * 2 1 4 4 H 1.48505 * 109.46988 * 240.00244 * 3 2 1 5 5 H 1.48496 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47452 * 120.00102 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 O 1.45206 * 109.47091 * 179.97438 * 11 10 9 13 13 C 1.34841 * 116.99897 * 179.97438 * 12 11 10 14 14 O 1.21562 * 120.00640 * 0.02562 * 13 12 11 15 15 C 1.46715 * 119.99742 * 180.02562 * 13 12 11 16 16 C 1.34596 * 119.99691 * 179.97438 * 15 13 12 17 17 C 1.47527 * 119.99798 * 179.97438 * 16 15 13 18 18 C 1.39977 * 120.58514 * 180.02562 * 17 16 15 19 19 C 1.38512 * 118.24206 * 180.02562 * 18 17 16 20 20 N 1.32323 * 119.18834 * 359.97438 * 19 18 17 21 21 C 1.31881 * 121.11933 * 0.02562 * 20 19 18 22 22 N 1.31576 * 121.94151 * 359.71163 * 21 20 19 23 23 H 0.97007 * 119.99539 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 25 25 H 1.08996 * 109.46805 * 299.99825 * 9 7 2 26 26 H 1.08992 * 109.47554 * 60.00123 * 10 9 7 27 27 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 28 28 H 1.09001 * 109.47142 * 59.99823 * 11 10 9 29 29 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 30 30 H 1.07995 * 120.00120 * 359.97438 * 15 13 12 31 31 H 1.07999 * 120.00337 * 0.02562 * 16 15 13 32 32 H 1.07998 * 120.87582 * 359.97438 * 18 17 16 33 33 H 1.07995 * 120.40176 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.03061 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 8 2.4235 -6.0908 -0.0007 13 6 1.9080 -7.3368 -0.0008 14 8 0.7028 -7.4961 -0.0008 15 6 2.8016 -8.5004 -0.0008 16 6 2.2871 -9.7441 -0.0004 17 6 3.1857 -10.9141 -0.0010 18 6 2.6638 -12.2130 -0.0011 19 6 3.5517 -13.2761 -0.0011 20 7 4.8520 -13.0308 -0.0016 21 6 5.3126 -11.7951 -0.0015 22 7 4.5094 -10.7529 -0.0066 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8903 26 1 2.8717 -3.6045 0.8904 27 1 2.8717 -3.6044 -0.8895 28 1 0.8536 -5.0445 -0.8903 29 1 0.8530 -5.0451 0.8897 30 1 3.8723 -8.3590 -0.0012 31 1 1.2164 -9.8856 -0.0004 32 1 1.5971 -12.3816 -0.0003 33 1 3.1871 -14.2926 -0.0016 34 1 6.3804 -11.6337 -0.0023 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754926650.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:58 Heat of formation + Delta-G solvation = -35.083947 kcal Electronic energy + Delta-G solvation = -17495.337411 eV Core-core repulsion = 14393.620901 eV Total energy + Delta-G solvation = -3101.716509 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36831 -40.17568 -36.71877 -35.33123 -33.99227 -33.21413 -31.89721 -31.49047 -27.41182 -25.95617 -24.82561 -23.57042 -22.28276 -20.43532 -19.87881 -18.40364 -17.56565 -16.92840 -16.51596 -16.29454 -15.97179 -15.85591 -15.25148 -14.48468 -14.16926 -14.06546 -14.02712 -13.41791 -12.52021 -12.24186 -12.16964 -11.85480 -11.79260 -11.35049 -10.95770 -10.74657 -10.64834 -10.58445 -10.50744 -10.40957 -9.77859 -9.73750 -9.51988 -9.44831 -9.18149 -8.38635 -6.03622 -4.06670 -0.18645 0.49856 1.38368 2.74921 2.86170 3.32757 3.36955 3.39606 3.42404 3.49238 3.71206 3.99665 4.42548 4.46281 4.56061 4.81388 4.87484 5.02998 5.19756 5.32273 5.55940 5.58756 5.66971 5.85219 5.90234 6.00336 6.42952 6.50102 6.53265 6.79708 6.97333 7.58777 7.59611 7.70677 7.81151 7.94567 8.35638 8.99323 9.57533 11.07772 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.058782 B = 0.002464 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.223904 B =11362.247920 C =11812.722511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.110 4.110 11 C 0.068 3.932 12 O -0.349 6.349 13 C 0.486 3.514 14 O -0.509 6.509 15 C -0.110 4.110 16 C -0.054 4.054 17 C 0.197 3.803 18 C -0.207 4.207 19 C 0.150 3.850 20 N -0.523 5.523 21 C 0.301 3.699 22 N -0.511 5.511 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.172 0.828 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.439 -25.923 0.011 26.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.265 6.265 13 C 0.331 3.669 14 O -0.399 6.399 15 C -0.132 4.132 16 C -0.073 4.073 17 C 0.053 3.947 18 C -0.229 4.229 19 C -0.015 4.015 20 N -0.237 5.237 21 C 0.013 3.987 22 N -0.225 5.225 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.189 0.811 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 6.909 -25.651 0.003 26.565 hybrid contribution -0.624 0.824 0.001 1.034 sum 6.285 -24.827 0.004 25.610 Atomic orbital electron populations 1.69957 1.06089 1.26877 1.50460 1.25035 0.94893 0.99377 0.95189 0.86594 0.79520 0.82840 0.78679 1.20174 1.21277 1.20168 1.21137 0.93105 0.90673 1.51121 0.92450 1.19050 0.93831 0.90722 0.97694 1.21778 0.99967 0.90885 1.02093 1.23567 0.91188 0.83445 1.02295 1.86617 1.42292 1.14799 1.82821 1.21303 0.87316 0.84614 0.73659 1.90862 1.16401 1.87234 1.45442 1.22662 1.01386 0.89966 0.99191 1.22175 0.99122 0.89783 0.96216 1.20335 0.90167 0.92844 0.91333 1.23060 1.03271 0.93553 1.03006 1.23258 0.88330 1.00120 0.89823 1.68398 1.16575 1.25031 1.13709 1.25008 1.00900 0.82694 0.90140 1.68533 1.04009 1.36369 1.13594 0.92833 0.96218 0.96209 0.92047 0.92052 0.91329 0.91322 0.82727 0.82973 0.82825 0.81091 0.78319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 11 C 0.07 1.25 5.48 37.16 0.20 1.45 16 12 O -0.35 -5.87 10.23 -40.88 -0.42 -6.29 16 13 C 0.49 7.31 7.90 34.15 0.27 7.58 16 14 O -0.51 -8.74 16.03 -19.31 -0.31 -9.05 16 15 C -0.11 -1.25 9.70 -37.45 -0.36 -1.62 16 16 C -0.05 -0.51 9.49 -37.09 -0.35 -0.86 16 17 C 0.20 1.74 6.74 -82.77 -0.56 1.18 16 18 C -0.21 -1.30 9.94 -38.83 -0.39 -1.69 16 19 C 0.15 0.92 11.30 -17.24 -0.19 0.73 16 20 N -0.52 -4.30 10.42 -14.64 -0.15 -4.45 16 21 C 0.30 2.44 12.27 -92.27 -1.13 1.30 16 22 N -0.51 -4.91 9.50 -11.25 -0.11 -5.02 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.16 1.64 7.45 -52.49 -0.39 1.25 16 31 H 0.15 1.27 7.52 -52.49 -0.39 0.87 16 32 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 33 H 0.17 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.20 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 312.26 15.07 4.71 4.71 Total: -1.00 -33.16 312.26 -7.91 -41.06 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -4.13 Total: -4.05 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -3.21 Total: -7.38 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.48 Total: -35.57 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.73 Total: -15.34 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.16 -7.91 -41.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754926650.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.979 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds