Wall clock time and date at job start Mon Mar 30 2020 04:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00451 * 2 1 4 4 H 1.48505 * 109.46988 * 240.00244 * 3 2 1 5 5 H 1.48496 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47452 * 120.00102 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 O 1.45206 * 109.47091 * 179.97438 * 11 10 9 13 13 C 1.34841 * 116.99897 * 179.97438 * 12 11 10 14 14 O 1.21562 * 120.00640 * 0.02562 * 13 12 11 15 15 C 1.46715 * 119.99742 * 180.02562 * 13 12 11 16 16 C 1.34596 * 119.99691 * 179.97438 * 15 13 12 17 17 C 1.47527 * 119.99798 * 179.97438 * 16 15 13 18 18 C 1.39977 * 120.58514 * 180.02562 * 17 16 15 19 19 C 1.38512 * 118.24206 * 180.02562 * 18 17 16 20 20 N 1.32323 * 119.18834 * 359.97438 * 19 18 17 21 21 C 1.31881 * 121.11933 * 0.02562 * 20 19 18 22 22 N 1.31576 * 121.94151 * 359.71163 * 21 20 19 23 23 H 0.97007 * 119.99539 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 25 25 H 1.08996 * 109.46805 * 299.99825 * 9 7 2 26 26 H 1.08992 * 109.47554 * 60.00123 * 10 9 7 27 27 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 28 28 H 1.09001 * 109.47142 * 59.99823 * 11 10 9 29 29 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 30 30 H 1.07995 * 120.00120 * 359.97438 * 15 13 12 31 31 H 1.07999 * 120.00337 * 0.02562 * 16 15 13 32 32 H 1.07998 * 120.87582 * 359.97438 * 18 17 16 33 33 H 1.07995 * 120.40176 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.03061 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 8 2.4235 -6.0908 -0.0007 13 6 1.9080 -7.3368 -0.0008 14 8 0.7028 -7.4961 -0.0008 15 6 2.8016 -8.5004 -0.0008 16 6 2.2871 -9.7441 -0.0004 17 6 3.1857 -10.9141 -0.0010 18 6 2.6638 -12.2130 -0.0011 19 6 3.5517 -13.2761 -0.0011 20 7 4.8520 -13.0308 -0.0016 21 6 5.3126 -11.7951 -0.0015 22 7 4.5094 -10.7529 -0.0066 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8903 26 1 2.8717 -3.6045 0.8904 27 1 2.8717 -3.6044 -0.8895 28 1 0.8536 -5.0445 -0.8903 29 1 0.8530 -5.0451 0.8897 30 1 3.8723 -8.3590 -0.0012 31 1 1.2164 -9.8856 -0.0004 32 1 1.5971 -12.3816 -0.0003 33 1 3.1871 -14.2926 -0.0016 34 1 6.3804 -11.6337 -0.0023 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754926650.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:58 Heat of formation + Delta-G solvation = -54.052714 kcal Electronic energy + Delta-G solvation = -17496.159958 eV Core-core repulsion = 14393.620901 eV Total energy + Delta-G solvation = -3102.539057 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.95658 -41.41602 -38.02555 -36.09377 -35.93213 -33.86416 -33.66439 -32.37064 -29.15791 -26.98738 -25.44374 -25.10781 -23.40898 -22.17782 -20.92457 -19.29857 -18.66890 -18.26670 -17.66750 -17.65900 -17.15665 -16.49464 -16.41234 -15.87415 -15.62688 -14.99712 -14.78831 -14.43634 -14.12172 -13.89128 -13.83074 -13.28546 -12.81181 -12.53815 -12.49139 -12.40165 -12.08753 -11.92845 -11.87376 -11.47810 -11.42932 -11.26038 -11.19158 -10.56674 -10.36454 -10.15348 -8.21725 -6.33210 -0.92665 -0.00985 0.58312 1.41473 1.44956 1.52191 1.57745 1.83150 2.41539 2.83858 2.84871 3.12005 3.24195 3.36725 3.72613 3.97925 3.99605 4.04265 4.05395 4.16372 4.40373 4.59046 4.62406 4.76887 4.79239 4.96667 5.06612 5.11413 5.34258 5.37850 5.49615 5.63664 5.79975 5.94500 6.19119 6.58408 6.82319 7.02851 7.36104 8.90227 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.058782 B = 0.002464 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.223904 B =11362.247920 C =11812.722511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.095 4.095 11 C 0.077 3.923 12 O -0.354 6.354 13 C 0.489 3.511 14 O -0.536 6.536 15 C -0.137 4.137 16 C -0.017 4.017 17 C 0.167 3.833 18 C -0.192 4.192 19 C 0.149 3.851 20 N -0.537 5.537 21 C 0.289 3.711 22 N -0.532 5.532 23 H 0.265 0.735 24 H -0.002 1.002 25 H -0.002 1.002 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.186 0.814 33 H 0.208 0.792 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.412 -27.536 0.012 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.011 4.011 10 C -0.133 4.133 11 C 0.004 3.996 12 O -0.270 6.270 13 C 0.336 3.664 14 O -0.428 6.428 15 C -0.158 4.158 16 C -0.036 4.036 17 C 0.025 3.975 18 C -0.213 4.213 19 C -0.017 4.017 20 N -0.251 5.251 21 C 0.002 3.998 22 N -0.247 5.247 23 H 0.073 0.927 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.177 0.823 31 H 0.183 0.817 32 H 0.203 0.797 33 H 0.224 0.776 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.902 -27.278 0.005 28.400 hybrid contribution -0.945 1.095 0.000 1.446 sum 6.957 -26.184 0.005 27.092 Atomic orbital electron populations 1.70093 1.07846 1.27998 1.51365 1.26017 0.95819 1.03525 0.94594 0.85437 0.78194 0.77762 0.79276 1.19075 1.20895 1.19063 1.21599 0.93741 0.91905 1.51001 0.91724 1.18931 0.94246 0.92383 0.95547 1.21472 0.98795 0.90443 1.02576 1.23193 0.90882 0.83386 1.02132 1.86592 1.41775 1.15305 1.83327 1.21878 0.87540 0.84492 0.72449 1.90844 1.17561 1.87297 1.47133 1.22429 1.00867 0.89102 1.03408 1.22411 0.99890 0.89362 0.91970 1.20433 0.90130 0.93568 0.93410 1.23413 1.04986 0.92246 1.00649 1.23923 0.87603 1.01763 0.88376 1.68461 1.17879 1.24995 1.13801 1.25425 1.01762 0.82531 0.90124 1.68500 1.04685 1.37326 1.14191 0.92661 0.98385 0.98373 0.91489 0.91499 0.91565 0.91553 0.82313 0.81737 0.79689 0.77557 0.76448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.54 -31.00 9.11 25.60 0.23 -30.76 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.10 -4.00 5.53 30.59 0.17 -3.83 16 11 C 0.08 2.90 5.48 71.98 0.39 3.30 16 12 O -0.35 -11.93 10.23 -57.54 -0.59 -12.52 16 13 C 0.49 14.71 7.90 70.04 0.55 15.27 16 14 O -0.54 -18.45 16.03 19.63 0.31 -18.13 16 15 C -0.14 -3.03 9.70 23.65 0.23 -2.81 16 16 C -0.02 -0.30 9.49 23.89 0.23 -0.07 16 17 C 0.17 2.64 6.74 41.79 0.28 2.93 16 18 C -0.19 -1.81 9.94 22.76 0.23 -1.58 16 19 C 0.15 1.36 11.30 84.68 0.96 2.32 16 20 N -0.54 -7.68 10.42 -200.22 -2.09 -9.77 16 21 C 0.29 4.30 12.27 180.92 2.22 6.52 16 22 N -0.53 -9.62 9.50 -189.50 -1.80 -11.42 16 23 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 24 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 25 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.16 3.36 7.45 -2.91 -0.02 3.33 16 31 H 0.17 2.41 7.52 -2.91 -0.02 2.39 16 32 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 33 H 0.21 0.26 8.06 -2.91 -0.02 0.24 16 34 H 0.22 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -71.89 312.26 5.35 -66.54 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.10 Total: 2.57 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 6.10 Total: -6.84 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -3.60 Total: -77.82 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.27 Total: -30.65 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -71.89 5.35 -66.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754926650.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.483 kcal (2) G-P(sol) polarization free energy of solvation -71.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds