Wall clock time and date at job start Mon Mar 30 2020 04:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31004 * 119.99856 * 2 1 4 4 C 1.50696 * 119.99775 * 359.97438 * 3 2 1 5 5 H 1.08996 * 109.47727 * 359.97438 * 4 3 2 6 6 O 1.42905 * 109.46906 * 239.99890 * 4 3 2 7 7 C 1.50696 * 109.47502 * 120.00390 * 4 3 2 8 8 O 1.21271 * 120.00676 * 114.99390 * 7 4 3 9 9 N 1.34786 * 119.99589 * 294.99756 * 7 4 3 10 10 C 1.39264 * 120.00041 * 183.71092 * 9 7 4 11 11 C 1.39676 * 119.57496 * 339.11287 * 10 9 7 12 12 C 1.38654 * 119.49678 * 180.02562 * 11 10 9 13 13 C 1.38350 * 118.66886 * 359.97438 * 12 11 10 14 14 C 1.40575 * 119.12795 * 0.02562 * 13 12 11 15 15 C 1.41340 * 119.78575 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00184 * 5.12765 * 15 14 13 17 17 C 1.40029 * 120.00206 * 185.13127 * 15 14 13 18 18 N 1.30737 * 120.00175 * 184.82228 * 17 15 14 19 19 Si 1.86801 * 119.99756 * 4.82223 * 17 15 14 20 20 H 1.48506 * 109.47276 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.47177 * 299.99572 * 19 17 15 22 22 H 1.48496 * 109.47434 * 60.00093 * 19 17 15 23 23 N 1.31909 * 119.57602 * 159.40350 * 10 9 7 24 24 H 1.09000 * 109.47045 * 60.00179 * 1 2 3 25 25 H 1.09002 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47551 * 300.00191 * 1 2 3 27 27 H 1.07996 * 120.00117 * 179.97438 * 2 1 3 28 28 H 1.07998 * 119.99608 * 179.97438 * 3 2 1 29 29 H 0.96701 * 114.00049 * 299.99932 * 6 4 3 30 30 H 0.97000 * 119.99563 * 3.70912 * 9 7 4 31 31 H 1.08005 * 120.24919 * 359.97438 * 11 10 9 32 32 H 1.07999 * 120.66863 * 179.97438 * 12 11 10 33 33 H 1.07993 * 120.43370 * 180.02562 * 13 12 11 34 34 H 0.96998 * 119.99869 * 354.98712 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4084 2.4396 -0.0006 5 1 0.3368 2.2404 -0.0014 6 8 1.7541 3.1887 -1.1674 7 6 1.7720 3.2302 1.2297 8 8 2.3591 4.2857 1.1208 9 7 1.4446 2.7641 2.4513 10 6 1.7112 3.5302 3.5834 11 6 2.6767 4.5376 3.5223 12 6 2.9412 5.2991 4.6505 13 6 2.2343 5.0351 5.8101 14 6 1.2750 4.0075 5.8078 15 6 0.5444 3.7264 6.9846 16 1 0.6634 4.3523 7.8566 17 6 -0.3337 2.6362 7.0199 18 7 -1.0793 2.4313 8.0741 19 14 -0.4399 1.4748 5.5607 20 1 -1.4364 0.4113 5.8459 21 1 -0.8576 2.2329 4.3540 22 1 0.8892 0.8572 5.3218 23 7 1.0526 3.2913 4.7011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.0470 -0.9353 0.0004 28 1 3.2420 1.1345 0.0004 29 1 2.6949 3.4024 -1.2332 30 1 1.0234 1.8951 2.5419 31 1 3.2138 4.7215 2.6035 32 1 3.6841 6.0825 4.6246 33 1 2.4170 5.6109 6.7052 34 1 -0.9725 2.9901 8.8597 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922158934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:38 Heat of formation + Delta-G solvation = -40.648751 kcal Electronic energy + Delta-G solvation = -19440.105965 eV Core-core repulsion = 16338.148148 eV Total energy + Delta-G solvation = -3101.957817 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48115 -38.54781 -36.96786 -35.14634 -34.33527 -33.51148 -31.15459 -29.97043 -28.36647 -26.31178 -25.27485 -22.44478 -21.80436 -20.25114 -19.41738 -18.58489 -17.92517 -17.00393 -16.31460 -15.71859 -15.18705 -15.02348 -14.68988 -14.04880 -13.73436 -13.49815 -13.42389 -13.00629 -12.87962 -12.68676 -12.28255 -12.03423 -11.96965 -11.68730 -11.13554 -10.88785 -10.64495 -10.37395 -10.06568 -9.72142 -9.60747 -9.23232 -8.98498 -8.59411 -7.79588 -7.53673 -7.26356 -4.82072 1.74535 2.14702 2.59880 2.92414 3.16156 3.47937 3.59249 3.92179 4.29125 4.34683 4.48194 4.57965 4.71038 4.75445 5.02294 5.10611 5.41079 5.47346 5.68650 5.74911 5.82266 6.02360 6.24714 6.38243 6.42630 6.47651 6.51027 7.06926 7.12099 7.31995 7.39972 7.51905 7.57372 7.71221 8.06381 8.21311 8.35766 8.60470 9.35109 9.95814 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.007203 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.786875 B = 3886.214147 C = 5056.977807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.207 4.207 4 C 0.124 3.876 5 H 0.132 0.868 6 O -0.531 6.531 7 C 0.490 3.510 8 O -0.507 6.507 9 N -0.647 5.647 10 C 0.383 3.617 11 C -0.314 4.314 12 C -0.036 4.036 13 C -0.275 4.275 14 C 0.272 3.728 15 C -0.475 4.475 16 H 0.084 0.916 17 C 0.043 3.957 18 N -0.805 5.805 19 Si 1.153 2.847 20 H -0.331 1.331 21 H -0.280 1.280 22 H -0.294 1.294 23 N -0.598 5.598 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.384 0.616 30 H 0.406 0.594 31 H 0.144 0.856 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.893 -5.231 -13.589 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.226 4.226 4 C 0.061 3.939 5 H 0.149 0.851 6 O -0.336 6.336 7 C 0.276 3.724 8 O -0.382 6.382 9 N -0.293 5.293 10 C 0.152 3.848 11 C -0.338 4.338 12 C -0.060 4.060 13 C -0.297 4.297 14 C 0.148 3.852 15 C -0.507 4.507 16 H 0.102 0.898 17 C -0.178 4.178 18 N -0.426 5.426 19 Si 0.988 3.012 20 H -0.265 1.265 21 H -0.208 1.208 22 H -0.222 1.222 23 N -0.324 5.324 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.233 0.767 30 H 0.242 0.758 31 H 0.161 0.839 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.241 -6.390 -14.244 15.771 hybrid contribution 1.872 1.770 1.186 2.836 sum 4.114 -4.620 -13.058 14.449 Atomic orbital electron populations 1.21081 0.92936 1.03380 1.02705 1.22980 0.96608 0.97873 0.96490 1.23217 1.00533 0.93743 1.05098 1.20929 1.01209 0.87971 0.83784 0.85056 1.86621 1.31916 1.75060 1.39986 1.21491 0.79459 0.86651 0.84802 1.90605 1.39287 1.22580 1.85695 1.43275 1.59915 1.21127 1.04943 1.18151 0.90896 0.90307 0.85422 1.21722 1.06420 1.04260 1.01430 1.20962 0.96290 0.96267 0.92482 1.21622 1.04570 1.05104 0.98438 1.18276 0.89691 0.87720 0.89495 1.20733 1.20611 1.11814 0.97575 0.89816 1.27772 0.89288 0.97844 1.02935 1.70640 1.30460 1.37554 1.03989 0.81879 0.74813 0.71816 0.72674 1.26507 1.20794 1.22243 1.65988 1.30965 1.35074 1.00347 0.90682 0.91207 0.90951 0.86277 0.86123 0.76720 0.75829 0.83860 0.87536 0.87623 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.65 36.01 0.31 -0.85 16 2 C -0.12 -1.06 10.26 -36.03 -0.37 -1.43 16 3 C -0.21 -2.09 9.05 -36.03 -0.33 -2.41 16 4 C 0.12 1.52 3.57 -29.04 -0.10 1.41 16 5 H 0.13 1.46 5.77 -51.93 -0.30 1.16 16 6 O -0.53 -6.64 12.98 -55.09 -0.72 -7.35 16 7 C 0.49 8.14 7.05 -10.98 -0.08 8.07 16 8 O -0.51 -9.86 12.99 -14.30 -0.19 -10.05 16 9 N -0.65 -11.97 5.37 -11.40 -0.06 -12.03 16 10 C 0.38 8.80 7.51 -154.98 -1.16 7.64 16 11 C -0.31 -7.09 8.90 -38.89 -0.35 -7.44 16 12 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 13 C -0.27 -6.58 9.83 -38.66 -0.38 -6.96 16 14 C 0.27 7.16 6.40 -85.00 -0.54 6.62 16 15 C -0.48 -12.93 9.57 -37.73 -0.36 -13.29 16 16 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16 17 C 0.04 1.16 5.52 -17.35 -0.10 1.06 16 18 N -0.80 -21.77 13.65 55.55 0.76 -21.02 16 19 Si 1.15 27.47 25.61 -169.99 -4.35 23.12 16 20 H -0.33 -7.79 7.11 56.52 0.40 -7.38 16 21 H -0.28 -6.55 6.61 56.52 0.37 -6.17 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 N -0.60 -15.14 4.54 -10.25 -0.05 -15.19 16 24 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.62 7.76 -51.93 -0.40 0.22 16 27 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.38 3.81 8.78 45.56 0.40 4.21 16 30 H 0.41 6.64 8.81 -40.82 -0.36 6.28 16 31 H 0.14 3.15 5.17 -52.92 -0.27 2.88 16 32 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.28 7.34 8.72 -40.82 -0.36 6.98 16 LS Contribution 293.58 15.07 4.42 4.42 Total: -1.00 -31.42 293.58 -7.09 -38.50 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -3.05 Total: 8.36 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -3.86 Total: -8.77 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.65 Total: -48.24 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.90 Total: -17.40 kcal Atomic # 14 Polarization: 27.47 SS G_CDS: -4.35 Total: 23.12 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.42 -7.09 -38.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922158934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.144 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds