Wall clock time and date at job start Mon Mar 30 2020 04:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31004 * 119.99856 * 2 1 4 4 C 1.50696 * 119.99775 * 359.97438 * 3 2 1 5 5 H 1.08996 * 109.47727 * 359.97438 * 4 3 2 6 6 O 1.42905 * 109.46906 * 239.99890 * 4 3 2 7 7 C 1.50696 * 109.47502 * 120.00390 * 4 3 2 8 8 O 1.21271 * 120.00676 * 114.99390 * 7 4 3 9 9 N 1.34786 * 119.99589 * 294.99756 * 7 4 3 10 10 C 1.39264 * 120.00041 * 183.71092 * 9 7 4 11 11 C 1.39676 * 119.57496 * 339.11287 * 10 9 7 12 12 C 1.38654 * 119.49678 * 180.02562 * 11 10 9 13 13 C 1.38350 * 118.66886 * 359.97438 * 12 11 10 14 14 C 1.40575 * 119.12795 * 0.02562 * 13 12 11 15 15 C 1.41340 * 119.78575 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00184 * 5.12765 * 15 14 13 17 17 C 1.40029 * 120.00206 * 185.13127 * 15 14 13 18 18 N 1.30737 * 120.00175 * 184.82228 * 17 15 14 19 19 Si 1.86801 * 119.99756 * 4.82223 * 17 15 14 20 20 H 1.48506 * 109.47276 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.47177 * 299.99572 * 19 17 15 22 22 H 1.48496 * 109.47434 * 60.00093 * 19 17 15 23 23 N 1.31909 * 119.57602 * 159.40350 * 10 9 7 24 24 H 1.09000 * 109.47045 * 60.00179 * 1 2 3 25 25 H 1.09002 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47551 * 300.00191 * 1 2 3 27 27 H 1.07996 * 120.00117 * 179.97438 * 2 1 3 28 28 H 1.07998 * 119.99608 * 179.97438 * 3 2 1 29 29 H 0.96701 * 114.00049 * 299.99932 * 6 4 3 30 30 H 0.97000 * 119.99563 * 3.70912 * 9 7 4 31 31 H 1.08005 * 120.24919 * 359.97438 * 11 10 9 32 32 H 1.07999 * 120.66863 * 179.97438 * 12 11 10 33 33 H 1.07993 * 120.43370 * 180.02562 * 13 12 11 34 34 H 0.96998 * 119.99869 * 354.98712 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4084 2.4396 -0.0006 5 1 0.3368 2.2404 -0.0014 6 8 1.7541 3.1887 -1.1674 7 6 1.7720 3.2302 1.2297 8 8 2.3591 4.2857 1.1208 9 7 1.4446 2.7641 2.4513 10 6 1.7112 3.5302 3.5834 11 6 2.6767 4.5376 3.5223 12 6 2.9412 5.2991 4.6505 13 6 2.2343 5.0351 5.8101 14 6 1.2750 4.0075 5.8078 15 6 0.5444 3.7264 6.9846 16 1 0.6634 4.3523 7.8566 17 6 -0.3337 2.6362 7.0199 18 7 -1.0793 2.4313 8.0741 19 14 -0.4399 1.4748 5.5607 20 1 -1.4364 0.4113 5.8459 21 1 -0.8576 2.2329 4.3540 22 1 0.8892 0.8572 5.3218 23 7 1.0526 3.2913 4.7011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.0470 -0.9353 0.0004 28 1 3.2420 1.1345 0.0004 29 1 2.6949 3.4024 -1.2332 30 1 1.0234 1.8951 2.5419 31 1 3.2138 4.7215 2.6035 32 1 3.6841 6.0825 4.6246 33 1 2.4170 5.6109 6.7052 34 1 -0.9725 2.9901 8.8597 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922158934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:37 Heat of formation + Delta-G solvation = -61.765094 kcal Electronic energy + Delta-G solvation = -19441.021638 eV Core-core repulsion = 16338.148148 eV Total energy + Delta-G solvation = -3102.873491 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.91982 -40.19167 -38.09109 -36.46711 -35.66711 -35.16969 -33.02089 -31.64081 -29.38235 -27.51140 -26.86852 -24.02095 -23.58771 -21.76751 -20.48854 -20.19314 -19.41574 -18.41040 -17.42127 -17.07632 -16.88249 -16.30640 -16.19564 -15.59389 -15.41535 -14.78357 -14.62151 -14.34708 -14.29712 -14.08300 -13.79445 -13.61377 -13.07922 -12.76938 -12.64235 -12.42774 -12.21966 -11.77097 -11.68208 -11.55452 -11.14984 -10.68260 -10.45459 -10.06469 -9.72645 -9.39562 -9.21418 -6.84872 0.43207 0.70042 1.05015 1.43782 1.54005 1.71633 1.75592 2.06119 2.45161 2.64146 3.35110 3.46228 3.52288 3.75537 3.92838 4.05413 4.29404 4.36803 4.45989 4.61082 4.66293 4.75695 4.81546 5.04982 5.13224 5.31180 5.35076 5.38983 5.58741 5.69390 5.70804 5.77489 5.89721 6.19526 6.37393 6.52197 6.62713 6.91796 7.45299 7.92803 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.007203 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.786875 B = 3886.214147 C = 5056.977807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C -0.225 4.225 4 C 0.138 3.862 5 H 0.145 0.855 6 O -0.540 6.540 7 C 0.491 3.509 8 O -0.536 6.536 9 N -0.644 5.644 10 C 0.372 3.628 11 C -0.312 4.312 12 C -0.028 4.028 13 C -0.291 4.291 14 C 0.256 3.744 15 C -0.507 4.507 16 H 0.068 0.932 17 C 0.013 3.987 18 N -0.827 5.827 19 Si 1.184 2.816 20 H -0.327 1.327 21 H -0.275 1.275 22 H -0.290 1.290 23 N -0.610 5.610 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.139 0.861 28 H 0.128 0.872 29 H 0.394 0.606 30 H 0.417 0.583 31 H 0.155 0.845 32 H 0.144 0.856 33 H 0.115 0.885 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.609 -6.098 -16.001 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.123 4.123 3 C -0.244 4.244 4 C 0.076 3.924 5 H 0.162 0.838 6 O -0.346 6.346 7 C 0.279 3.721 8 O -0.412 6.412 9 N -0.291 5.291 10 C 0.141 3.859 11 C -0.336 4.336 12 C -0.052 4.052 13 C -0.313 4.313 14 C 0.131 3.869 15 C -0.540 4.540 16 H 0.086 0.914 17 C -0.204 4.204 18 N -0.450 5.450 19 Si 1.016 2.984 20 H -0.260 1.260 21 H -0.203 1.203 22 H -0.218 1.218 23 N -0.336 5.336 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.157 0.843 28 H 0.145 0.855 29 H 0.245 0.755 30 H 0.254 0.746 31 H 0.172 0.828 32 H 0.162 0.838 33 H 0.133 0.867 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.966 -7.264 -16.682 18.436 hybrid contribution 1.766 2.114 1.765 3.271 sum 4.732 -5.150 -14.918 16.476 Atomic orbital electron populations 1.21191 0.92570 1.04475 1.02715 1.23260 0.97060 0.98160 0.93773 1.23114 1.00822 0.92821 1.07636 1.20926 1.02201 0.88100 0.81213 0.83780 1.86602 1.33076 1.75294 1.39669 1.22457 0.78020 0.86428 0.85153 1.90564 1.40555 1.24058 1.86058 1.43359 1.60164 1.21292 1.04314 1.18534 0.90544 0.90861 0.85981 1.22096 1.05837 1.03728 1.01959 1.21374 0.96075 0.96482 0.91310 1.21787 1.04692 1.05069 0.99802 1.18463 0.90150 0.88610 0.89635 1.20729 1.22536 1.12736 0.97976 0.91368 1.28624 0.88973 0.98610 1.04152 1.70666 1.31623 1.38322 1.04417 0.81503 0.74956 0.70855 0.71102 1.26023 1.20251 1.21791 1.65999 1.31559 1.35269 1.00783 0.90151 0.89730 0.91395 0.84319 0.85464 0.75511 0.74588 0.82818 0.83794 0.86689 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.65 71.24 0.62 -1.35 16 2 C -0.10 -1.45 10.26 25.64 0.26 -1.19 16 3 C -0.23 -3.86 9.05 25.64 0.23 -3.62 16 4 C 0.14 3.02 3.57 29.10 0.10 3.13 16 5 H 0.15 2.79 5.77 -2.39 -0.01 2.78 16 6 O -0.54 -12.20 12.98 -129.99 -1.69 -13.88 16 7 C 0.49 15.23 7.05 87.65 0.62 15.85 16 8 O -0.54 -19.79 12.99 15.99 0.21 -19.58 16 9 N -0.64 -22.50 5.37 -308.36 -1.66 -24.16 16 10 C 0.37 16.49 7.51 133.25 1.00 17.49 16 11 C -0.31 -13.45 8.90 22.72 0.20 -13.25 16 12 C -0.03 -1.18 10.15 22.40 0.23 -0.95 16 13 C -0.29 -13.72 9.83 22.87 0.22 -13.49 16 14 C 0.26 13.52 6.40 40.19 0.26 13.77 16 15 C -0.51 -28.30 9.57 23.47 0.22 -28.07 16 16 H 0.07 3.87 8.05 -2.91 -0.02 3.84 16 17 C 0.01 0.71 5.52 85.29 0.47 1.18 16 18 N -0.83 -45.79 13.65 21.84 0.30 -45.49 16 19 Si 1.18 55.32 25.61 68.60 1.76 57.07 16 20 H -0.33 -14.85 7.11 99.48 0.71 -14.14 16 21 H -0.27 -12.46 6.61 99.48 0.66 -11.80 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 N -0.61 -30.36 4.54 -186.36 -0.85 -31.20 16 24 H 0.08 0.97 7.75 -2.39 -0.02 0.95 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.97 7.76 -2.39 -0.02 0.95 16 27 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 28 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.39 6.97 8.78 -74.06 -0.65 6.32 16 30 H 0.42 12.66 8.81 -92.71 -0.82 11.84 16 31 H 0.15 6.38 5.17 -9.74 -0.05 6.33 16 32 H 0.14 4.87 8.06 -2.91 -0.02 4.84 16 33 H 0.12 5.08 8.06 -2.91 -0.02 5.05 16 34 H 0.28 15.08 8.72 -92.71 -0.81 14.27 16 Total: -1.00 -66.84 293.58 2.07 -64.77 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.44 Total: 22.98 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.44 Total: -10.51 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -2.20 Total: -100.85 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.48 Total: -33.47 kcal Atomic # 14 Polarization: 55.32 SS G_CDS: 1.76 Total: 57.07 kcal Total: -66.84 2.07 -64.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922158934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.005 kcal (2) G-P(sol) polarization free energy of solvation -66.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds