Wall clock time and date at job start Mon Mar 30 2020 04:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47125 * 203.78420 * 3 2 1 5 5 C 1.36941 * 120.00243 * 264.23343 * 4 3 2 6 6 H 1.08002 * 120.00007 * 196.86861 * 5 4 3 7 7 C 1.38811 * 119.99935 * 16.86637 * 5 4 3 8 8 N 1.31623 * 120.00040 * 22.14858 * 7 5 4 9 9 Si 1.86802 * 119.99944 * 202.15207 * 7 5 4 10 10 H 1.48503 * 109.47408 * 59.99936 * 9 7 5 11 11 H 1.48505 * 109.46977 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47138 * 299.99413 * 9 7 5 13 13 C 1.46503 * 120.00202 * 84.22709 * 4 3 2 14 14 C 1.52999 * 109.47266 * 270.00452 * 13 4 3 15 15 S 1.81404 * 109.47306 * 179.97438 * 14 13 4 16 16 C 1.76195 * 103.00116 * 179.97438 * 15 14 13 17 17 C 1.39550 * 120.87094 * 359.72499 * 16 15 14 18 18 C 1.37865 * 119.05657 * 180.29328 * 17 16 15 19 19 N 1.32009 * 120.85204 * 359.97026 * 18 17 16 20 20 C 1.32009 * 121.92505 * 0.02562 * 19 18 17 21 21 C 1.37866 * 120.85054 * 0.02562 * 20 19 18 22 22 H 4.40645 * 5.51391 * 179.97438 * 4 1 2 23 23 H 1.08995 * 109.46957 * 83.78733 * 3 2 1 24 24 H 1.08994 * 109.47345 * 323.78612 * 3 2 1 25 25 H 0.97000 * 119.99848 * 180.02562 * 8 7 5 26 26 H 1.09000 * 109.47397 * 150.00227 * 13 4 3 27 27 H 1.08997 * 109.46797 * 30.00306 * 13 4 3 28 28 H 1.09000 * 109.47097 * 59.99591 * 14 13 4 29 29 H 1.08997 * 109.47094 * 299.99673 * 14 13 4 30 30 H 1.08002 * 120.47054 * 0.24346 * 17 16 15 31 31 H 1.08010 * 119.57077 * 179.97438 * 18 17 16 32 32 H 1.08003 * 119.58029 * 179.97438 * 20 19 18 33 33 H 1.07996 * 120.47429 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2648 0.5570 5 6 3.4739 2.2952 -0.2783 6 1 4.0784 3.1112 0.0892 7 6 3.0417 2.2908 -1.5974 8 7 1.9885 1.5808 -1.9426 9 14 3.9550 3.2924 -2.8828 10 1 5.3627 2.8267 -2.9650 11 1 3.2981 3.1198 -4.2034 12 1 3.9297 4.7275 -2.5019 13 6 3.2575 1.4267 2.0078 14 6 1.9473 1.9786 2.5731 15 16 2.1003 2.1784 4.3695 16 6 0.5234 2.8128 4.8336 17 6 -0.4667 3.0402 3.8768 18 6 -1.6851 3.5432 4.2807 19 7 -1.9203 3.8081 5.5523 20 6 -1.0102 3.6068 6.4872 21 6 0.2341 3.1072 6.1666 22 1 -1.0502 -0.0003 -0.0003 23 1 3.0093 -0.1104 -1.0216 24 1 3.0097 -0.8283 0.6071 25 1 1.6867 1.5775 -2.8644 26 1 4.0690 2.1203 2.2281 27 1 3.4716 0.4603 2.4642 28 1 1.1358 1.2850 2.3528 29 1 1.7332 2.9450 2.1166 30 1 -0.2808 2.8259 2.8347 31 1 -2.4573 3.7227 3.5471 32 1 -1.2431 3.8373 7.5163 33 1 0.9739 2.9445 6.9364 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930314473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:07 Heat of formation + Delta-G solvation = 115.366438 kcal Electronic energy + Delta-G solvation = -16588.513677 eV Core-core repulsion = 13936.074057 eV Total energy + Delta-G solvation = -2652.439620 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.80452 -36.51071 -32.50225 -32.18755 -31.69357 -31.22264 -29.28346 -26.17736 -24.34795 -23.59465 -23.07494 -20.85853 -17.88807 -17.61365 -16.66604 -16.15760 -15.85403 -15.20135 -14.89901 -14.42964 -13.93848 -13.86034 -13.71697 -13.24554 -13.00838 -12.63922 -11.87980 -11.78297 -11.54143 -11.31143 -10.91595 -10.76973 -10.43101 -10.36249 -10.18196 -9.99039 -9.39791 -9.17987 -9.05806 -8.93056 -8.56921 -7.42168 -7.23154 -5.96248 -3.36732 1.15926 1.16451 1.66515 2.66749 3.29366 3.36458 3.37466 3.81188 4.03941 4.25064 4.40650 4.47202 4.81997 5.05649 5.16759 5.21282 5.46801 5.51004 5.51571 5.62829 5.76944 5.78830 5.86304 6.06008 6.12712 6.36513 6.51573 6.64853 6.67256 7.08454 7.28206 7.60812 7.99539 8.09568 8.92603 9.04092 9.57602 10.02545 11.06665 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.024457 B = 0.005005 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.601489 B = 5592.549286 C = 5669.347852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.097 4.097 3 C 0.264 3.736 4 N -0.572 5.572 5 C -0.273 4.273 6 H 0.079 0.921 7 C 0.008 3.992 8 N -0.884 5.884 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.163 3.837 14 C -0.116 4.116 15 S -0.128 6.128 16 C -0.032 4.032 17 C -0.184 4.184 18 C 0.116 3.884 19 N -0.500 5.500 20 C 0.109 3.891 21 C -0.164 4.164 22 H 0.190 0.810 23 H 0.100 0.900 24 H 0.041 0.959 25 H 0.258 0.742 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.140 0.860 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 -0.084 11.243 11.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.100 4.100 3 C 0.138 3.862 4 N -0.291 5.291 5 C -0.402 4.402 6 H 0.096 0.904 7 C -0.193 4.193 8 N -0.526 5.526 9 Si 0.733 3.267 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.034 3.966 14 C -0.267 4.267 15 S 0.115 5.885 16 C -0.154 4.154 17 C -0.211 4.211 18 C -0.042 4.042 19 N -0.212 5.212 20 C -0.049 4.049 21 C -0.191 4.191 22 H 0.208 0.792 23 H 0.118 0.882 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.158 0.842 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.819 -0.063 11.879 12.018 hybrid contribution -0.504 0.706 -1.887 2.077 sum -2.323 0.644 9.992 10.279 Atomic orbital electron populations 1.24210 0.95359 1.05384 1.06842 1.24261 0.95269 0.95651 0.94846 1.17932 0.82858 0.85804 0.99556 1.44422 1.73517 1.11994 0.99201 1.19252 1.26656 1.03070 0.91232 0.90363 1.24969 0.96209 0.99378 0.98702 1.70120 1.21185 1.43503 1.17816 0.86342 0.79703 0.79789 0.80821 1.20740 1.21585 1.20853 1.20753 0.92345 0.98620 0.84854 1.25188 1.07107 1.05749 0.88657 1.85448 1.12585 1.77854 1.12587 1.22438 0.98327 0.98152 0.96473 1.22300 0.94846 1.03240 1.00687 1.22634 0.95278 0.93510 0.92756 1.67721 1.34378 1.17376 1.01677 1.22623 0.88973 0.94453 0.98866 1.21759 0.99106 1.03193 0.95025 0.79248 0.88181 0.94119 0.93180 0.92064 0.92930 0.89723 0.89450 0.84244 0.82655 0.82685 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.45 19.25 29.55 0.57 -5.88 16 2 C -0.10 -2.23 10.54 -37.12 -0.39 -2.62 16 3 C 0.26 5.87 5.45 -6.83 -0.04 5.83 16 4 N -0.57 -13.01 2.50 -176.58 -0.44 -13.45 16 5 C -0.27 -6.86 9.66 -15.06 -0.15 -7.01 16 6 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 7 C 0.01 0.20 4.85 -17.43 -0.08 0.12 16 8 N -0.88 -23.77 9.50 55.49 0.53 -23.24 16 9 Si 0.90 20.52 29.61 -169.99 -5.03 15.49 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.16 3.10 5.70 -4.04 -0.02 3.07 16 14 C -0.12 -2.09 4.55 37.16 0.17 -1.92 16 15 S -0.13 -1.99 21.96 -107.50 -2.36 -4.35 16 16 C -0.03 -0.49 6.17 -38.60 -0.24 -0.72 16 17 C -0.18 -2.81 9.43 -39.23 -0.37 -3.18 16 18 C 0.12 1.63 11.17 -17.61 -0.20 1.44 16 19 N -0.50 -7.16 10.36 -13.36 -0.14 -7.30 16 20 C 0.11 1.35 11.17 -17.61 -0.20 1.15 16 21 C -0.16 -2.13 9.90 -39.23 -0.39 -2.51 16 22 H 0.19 3.46 7.80 -54.08 -0.42 3.04 16 23 H 0.10 2.43 6.42 -51.93 -0.33 2.10 16 24 H 0.04 0.79 7.98 -51.93 -0.41 0.37 16 25 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.06 1.13 8.02 -51.93 -0.42 0.72 16 27 H 0.05 0.91 7.95 -51.93 -0.41 0.50 16 28 H 0.08 1.63 6.87 -51.92 -0.36 1.28 16 29 H 0.09 1.74 7.79 -51.93 -0.40 1.33 16 30 H 0.14 2.24 6.08 -52.49 -0.32 1.92 16 31 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.16 1.39 8.06 -52.48 -0.42 0.96 16 33 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 302.39 15.07 4.56 4.56 Total: -1.00 -27.95 302.39 -8.12 -36.07 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.90 Total: 4.46 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -1.33 Total: -12.23 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.05 Total: -43.99 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -2.36 Total: -4.35 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.95 -8.12 -36.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930314473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.433 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds