Wall clock time and date at job start Mon Mar 30 2020 04:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47125 * 203.78420 * 3 2 1 5 5 C 1.36941 * 120.00243 * 264.23343 * 4 3 2 6 6 H 1.08002 * 120.00007 * 196.86861 * 5 4 3 7 7 C 1.38811 * 119.99935 * 16.86637 * 5 4 3 8 8 N 1.31623 * 120.00040 * 22.14858 * 7 5 4 9 9 Si 1.86802 * 119.99944 * 202.15207 * 7 5 4 10 10 H 1.48503 * 109.47408 * 59.99936 * 9 7 5 11 11 H 1.48505 * 109.46977 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47138 * 299.99413 * 9 7 5 13 13 C 1.46503 * 120.00202 * 84.22709 * 4 3 2 14 14 C 1.52999 * 109.47266 * 270.00452 * 13 4 3 15 15 S 1.81404 * 109.47306 * 179.97438 * 14 13 4 16 16 C 1.76195 * 103.00116 * 179.97438 * 15 14 13 17 17 C 1.39550 * 120.87094 * 359.72499 * 16 15 14 18 18 C 1.37865 * 119.05657 * 180.29328 * 17 16 15 19 19 N 1.32009 * 120.85204 * 359.97026 * 18 17 16 20 20 C 1.32009 * 121.92505 * 0.02562 * 19 18 17 21 21 C 1.37866 * 120.85054 * 0.02562 * 20 19 18 22 22 H 4.40645 * 5.51391 * 179.97438 * 4 1 2 23 23 H 1.08995 * 109.46957 * 83.78733 * 3 2 1 24 24 H 1.08994 * 109.47345 * 323.78612 * 3 2 1 25 25 H 0.97000 * 119.99848 * 180.02562 * 8 7 5 26 26 H 1.09000 * 109.47397 * 150.00227 * 13 4 3 27 27 H 1.08997 * 109.46797 * 30.00306 * 13 4 3 28 28 H 1.09000 * 109.47097 * 59.99591 * 14 13 4 29 29 H 1.08997 * 109.47094 * 299.99673 * 14 13 4 30 30 H 1.08002 * 120.47054 * 0.24346 * 17 16 15 31 31 H 1.08010 * 119.57077 * 179.97438 * 18 17 16 32 32 H 1.08003 * 119.58029 * 179.97438 * 20 19 18 33 33 H 1.07996 * 120.47429 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2648 0.5570 5 6 3.4739 2.2952 -0.2783 6 1 4.0784 3.1112 0.0892 7 6 3.0417 2.2908 -1.5974 8 7 1.9885 1.5808 -1.9426 9 14 3.9550 3.2924 -2.8828 10 1 5.3627 2.8267 -2.9650 11 1 3.2981 3.1198 -4.2034 12 1 3.9297 4.7275 -2.5019 13 6 3.2575 1.4267 2.0078 14 6 1.9473 1.9786 2.5731 15 16 2.1003 2.1784 4.3695 16 6 0.5234 2.8128 4.8336 17 6 -0.4667 3.0402 3.8768 18 6 -1.6851 3.5432 4.2807 19 7 -1.9203 3.8081 5.5523 20 6 -1.0102 3.6068 6.4872 21 6 0.2341 3.1072 6.1666 22 1 -1.0502 -0.0003 -0.0003 23 1 3.0093 -0.1104 -1.0216 24 1 3.0097 -0.8283 0.6071 25 1 1.6867 1.5775 -2.8644 26 1 4.0690 2.1203 2.2281 27 1 3.4716 0.4603 2.4642 28 1 1.1358 1.2850 2.3528 29 1 1.7332 2.9450 2.1166 30 1 -0.2808 2.8259 2.8347 31 1 -2.4573 3.7227 3.5471 32 1 -1.2431 3.8373 7.5163 33 1 0.9739 2.9445 6.9364 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930314473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:07 Heat of formation + Delta-G solvation = 101.499813 kcal Electronic energy + Delta-G solvation = -16589.114979 eV Core-core repulsion = 13936.074057 eV Total energy + Delta-G solvation = -2653.040922 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87257 -38.23101 -34.02265 -33.52190 -33.43398 -32.32917 -30.94198 -27.98556 -25.89150 -24.73393 -24.30850 -22.48627 -19.42246 -18.97713 -18.38259 -17.28472 -17.15686 -16.77712 -16.19264 -16.02213 -15.56049 -15.07346 -15.00018 -14.64752 -14.59649 -14.08304 -13.43771 -13.32867 -13.04693 -12.81669 -12.67517 -12.33833 -12.25728 -11.91854 -11.60254 -11.46122 -10.81707 -10.73628 -10.48651 -10.34355 -10.22967 -9.06761 -8.65191 -7.89127 -5.30823 0.03565 0.11370 0.40526 1.32094 1.47837 1.51320 1.56799 2.30265 2.49643 2.57017 2.74933 3.24078 3.51065 3.78261 3.80895 3.97176 3.97422 4.03137 4.13756 4.22670 4.47840 4.60050 4.75602 4.80613 4.83872 4.87573 4.99760 5.11297 5.27934 5.59701 5.63972 5.65201 6.22383 6.94328 7.03789 7.31294 7.74490 8.16275 9.11819 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.024457 B = 0.005005 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.601489 B = 5592.549286 C = 5669.347852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.127 4.127 3 C 0.265 3.735 4 N -0.588 5.588 5 C -0.276 4.276 6 H 0.077 0.923 7 C -0.038 4.038 8 N -0.909 5.909 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.298 1.298 12 H -0.282 1.282 13 C 0.163 3.837 14 C -0.105 4.105 15 S -0.097 6.097 16 C -0.054 4.054 17 C -0.200 4.200 18 C 0.111 3.889 19 N -0.514 5.514 20 C 0.113 3.887 21 C -0.159 4.159 22 H 0.217 0.783 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.249 0.751 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.173 0.827 32 H 0.195 0.805 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 0.259 13.462 13.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.130 4.130 3 C 0.140 3.860 4 N -0.307 5.307 5 C -0.406 4.406 6 H 0.095 0.905 7 C -0.235 4.235 8 N -0.553 5.553 9 Si 0.789 3.211 10 H -0.202 1.202 11 H -0.225 1.225 12 H -0.208 1.208 13 C 0.036 3.964 14 C -0.256 4.256 15 S 0.146 5.854 16 C -0.176 4.176 17 C -0.226 4.226 18 C -0.046 4.046 19 N -0.225 5.225 20 C -0.045 4.045 21 C -0.185 4.185 22 H 0.234 0.766 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.190 0.810 32 H 0.212 0.788 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.938 0.285 14.121 14.256 hybrid contribution -0.514 0.621 -2.359 2.493 sum -2.452 0.906 11.762 12.049 Atomic orbital electron populations 1.24937 0.96307 1.04437 1.05799 1.24596 0.95997 0.96577 0.95815 1.17870 0.82867 0.86578 0.98716 1.44456 1.74042 1.11648 1.00583 1.19468 1.26092 1.03143 0.91898 0.90503 1.25550 0.96977 1.00853 1.00170 1.70271 1.22487 1.45357 1.17192 0.85467 0.78701 0.78529 0.78436 1.20231 1.22468 1.20813 1.20805 0.92664 0.99856 0.83119 1.24636 1.05822 1.03861 0.91298 1.85135 1.12963 1.78384 1.08893 1.22609 0.97952 0.99348 0.97683 1.22238 0.95797 1.04532 1.00072 1.22897 0.95242 0.93058 0.93375 1.67808 1.35162 1.17686 1.01864 1.23279 0.88212 0.92778 1.00186 1.22080 0.99964 1.02076 0.94419 0.76574 0.90831 0.91354 0.94188 0.91659 0.90930 0.91169 0.91938 0.85902 0.81011 0.78840 0.82020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -12.72 19.25 74.32 1.43 -11.29 16 2 C -0.13 -5.86 10.54 31.12 0.33 -5.53 16 3 C 0.26 11.91 5.45 84.57 0.46 12.37 16 4 N -0.59 -26.86 2.50 -712.57 -1.78 -28.65 16 5 C -0.28 -14.05 9.66 84.03 0.81 -13.24 16 6 H 0.08 3.83 7.90 -2.91 -0.02 3.81 16 7 C -0.04 -1.99 4.85 84.86 0.41 -1.58 16 8 N -0.91 -50.03 9.50 21.65 0.21 -49.83 16 9 Si 0.96 42.89 29.61 68.60 2.03 44.92 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 C 0.16 6.10 5.70 86.38 0.49 6.59 16 14 C -0.10 -3.78 4.55 71.98 0.33 -3.45 16 15 S -0.10 -2.86 21.96 -56.49 -1.24 -4.10 16 16 C -0.05 -1.55 6.17 22.90 0.14 -1.41 16 17 C -0.20 -6.00 9.43 22.50 0.21 -5.79 16 18 C 0.11 3.01 11.17 84.58 0.94 3.95 16 19 N -0.51 -13.51 10.36 -196.18 -2.03 -15.54 16 20 C 0.11 2.42 11.17 84.58 0.94 3.37 16 21 C -0.16 -3.63 9.90 22.50 0.22 -3.41 16 22 H 0.22 7.67 7.80 -4.41 -0.03 7.63 16 23 H 0.07 3.68 6.42 -2.39 -0.02 3.67 16 24 H 0.07 2.61 7.98 -2.39 -0.02 2.59 16 25 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 26 H 0.07 2.37 8.02 -2.39 -0.02 2.35 16 27 H 0.07 2.41 7.95 -2.39 -0.02 2.39 16 28 H 0.07 2.73 6.87 -2.39 -0.02 2.71 16 29 H 0.06 2.54 7.79 -2.39 -0.02 2.53 16 30 H 0.12 4.05 6.08 -2.91 -0.02 4.04 16 31 H 0.17 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -59.82 302.39 5.01 -54.81 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 1.10 Total: 17.80 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 6.73 Total: -19.42 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -3.61 Total: -94.01 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -1.24 Total: -4.10 kcal Total: -59.82 5.01 -54.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930314473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.313 kcal (2) G-P(sol) polarization free energy of solvation -59.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds