Wall clock time and date at job start Mon Mar 30 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.39676 * 119.99572 * 180.02562 * 2 1 3 13 13 C 1.38984 * 119.89270 * 179.97438 * 12 2 1 14 14 C 1.38252 * 119.75406 * 179.97438 * 13 12 2 15 15 C 1.37759 * 120.00932 * 0.02562 * 14 13 12 16 16 C 1.38968 * 120.92517 * 0.02562 * 15 14 13 17 17 C 1.38604 * 119.89436 * 359.71695 * 12 2 1 18 18 N 1.39545 * 110.22085 * 180.02562 * 16 15 14 19 19 C 1.34363 * 112.25063 * 359.97438 * 18 16 15 20 20 O 1.21285 * 126.43770 * 179.97438 * 19 18 16 21 21 C 1.51159 * 132.75312 * 179.97438 * 15 14 13 22 22 H 1.09003 * 110.50689 * 61.34955 * 21 15 14 23 23 O 1.42904 * 110.51057 * 298.64924 * 21 15 14 24 24 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 25 25 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 26 26 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 27 27 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 28 28 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 29 29 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 30 30 H 1.08002 * 120.12346 * 359.97438 * 13 12 2 31 31 H 1.07997 * 119.99376 * 180.02562 * 14 13 12 32 32 H 1.08001 * 119.96305 * 0.02638 * 17 12 2 33 33 H 0.96996 * 123.87466 * 179.97438 * 18 16 15 34 34 H 0.96694 * 114.00137 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.5589 3.6147 0.6732 8 14 3.4497 3.4098 3.4340 9 1 2.8715 2.4100 4.3673 10 1 4.9134 3.5122 3.6635 11 1 2.8177 4.7325 3.6712 12 6 2.1632 -1.2097 -0.0005 13 6 3.5531 -1.2072 -0.0011 14 6 4.2414 -2.4062 -0.0011 15 6 3.5498 -3.5976 -0.0011 16 6 2.1602 -3.6168 -0.0016 17 6 1.4679 -2.4087 0.0049 18 7 1.6960 -4.9328 -0.0009 19 6 2.6996 -5.8263 -0.0005 20 8 2.5888 -7.0341 0.0006 21 6 3.9946 -5.0423 -0.0016 22 1 4.5751 -5.2634 0.8941 23 8 4.7548 -5.3317 -1.1765 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6084 2.0283 -0.5138 28 1 3.1499 1.1383 -0.5138 29 1 4.0390 4.4388 0.8505 30 1 4.0934 -0.2721 -0.0015 31 1 5.3213 -2.4088 -0.0011 32 1 0.3879 -2.4059 0.0090 33 1 0.7567 -5.1748 -0.0008 34 1 5.0661 -6.2457 -1.2283 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036194015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:54 Heat of formation + Delta-G solvation = -33.042455 kcal Electronic energy + Delta-G solvation = -19162.134555 eV Core-core repulsion = 16060.506572 eV Total energy + Delta-G solvation = -3101.627983 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.32086 -38.67566 -36.87231 -36.21453 -34.40907 -32.77764 -30.58192 -29.40213 -27.74235 -27.17290 -24.65999 -22.65335 -21.92067 -21.24917 -19.96280 -17.73575 -17.68260 -16.65442 -16.48440 -16.12859 -15.22558 -15.02033 -14.77951 -14.29651 -14.15127 -13.86855 -13.50402 -12.88028 -12.74054 -12.51928 -12.25513 -12.02763 -11.55435 -11.45166 -11.09835 -10.91343 -10.76056 -10.72150 -10.40049 -10.10619 -9.79170 -9.75158 -8.99680 -8.58127 -7.91668 -6.67716 -6.13094 -4.25548 1.45667 1.90184 2.55614 3.00851 3.21027 3.29821 3.33881 3.91647 4.14354 4.16717 4.34933 4.46556 4.69401 5.14593 5.17809 5.28690 5.53762 5.73017 5.88484 5.92459 5.93506 6.01468 6.22153 6.36312 6.67930 6.73883 6.81603 6.92214 7.05916 7.22258 7.34774 7.42628 7.72630 7.89758 8.03638 8.09866 8.26996 8.82926 9.41828 10.88098 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.004786 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.658002 B = 5848.552791 C = 6206.843317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.606 5.606 3 C 0.246 3.754 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.276 3.724 13 C -0.202 4.202 14 C -0.004 4.004 15 C -0.224 4.224 16 C 0.186 3.814 17 C -0.238 4.238 18 N -0.654 5.654 19 C 0.505 3.495 20 O -0.514 6.514 21 C 0.133 3.867 22 H 0.100 0.900 23 O -0.533 6.533 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.409 0.591 34 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -12.097 -1.535 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.310 5.310 3 C 0.127 3.873 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.166 3.834 13 C -0.225 4.225 14 C -0.023 4.023 15 C -0.229 4.229 16 C 0.089 3.911 17 C -0.264 4.264 18 N -0.298 5.298 19 C 0.292 3.708 20 O -0.390 6.390 21 C 0.071 3.929 22 H 0.117 0.883 23 O -0.338 6.338 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.246 0.754 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.008 -11.751 -1.709 12.044 hybrid contribution -0.336 -0.226 1.147 1.216 sum -2.344 -11.977 -0.562 12.217 Atomic orbital electron populations 1.21554 0.81181 1.02221 1.00043 1.47206 1.04671 1.04515 1.74594 1.19388 0.92249 0.78390 0.97287 1.21582 1.36519 1.06720 0.92482 0.92085 1.24955 0.95306 0.96238 0.97458 1.69935 1.38046 1.14444 1.30756 0.86459 0.78118 0.78472 0.84524 1.19725 1.20779 1.20948 1.17524 0.91302 0.85379 0.89179 1.20894 0.92434 0.98675 1.10506 1.19938 0.99206 0.89550 0.93650 1.18981 0.92092 0.92694 1.19170 1.17646 0.92719 0.83517 0.97183 1.19609 0.99063 0.88612 1.19090 1.43630 1.10081 1.05614 1.70432 1.21616 0.88374 0.86545 0.74293 1.90768 1.86501 1.12264 1.49425 1.20811 0.89314 0.92348 0.90416 0.88292 1.86714 1.71573 1.34139 1.41406 0.94200 0.92550 0.91070 0.94862 0.94244 0.92592 0.83967 0.85892 0.86074 0.75371 0.77159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 10.18 59.84 0.61 2.10 16 2 N -0.61 -11.88 2.99 -181.08 -0.54 -12.42 16 3 C 0.25 5.76 4.91 -5.20 -0.03 5.73 16 4 C -0.53 -13.75 9.39 -34.44 -0.32 -14.08 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 7 N -0.89 -24.55 13.29 55.43 0.74 -23.82 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 C 0.28 5.10 6.54 -83.87 -0.55 4.55 16 13 C -0.20 -3.73 9.22 -39.30 -0.36 -4.10 16 14 C 0.00 -0.06 10.03 -39.75 -0.40 -0.46 16 15 C -0.22 -3.48 6.03 -104.30 -0.63 -4.11 16 16 C 0.19 2.82 7.10 -83.70 -0.59 2.23 16 17 C -0.24 -3.78 9.23 -39.07 -0.36 -4.14 16 18 N -0.65 -8.65 5.88 -9.71 -0.06 -8.71 16 19 C 0.51 7.17 8.39 -10.83 -0.09 7.08 16 20 O -0.51 -8.28 18.03 5.55 0.10 -8.18 16 21 C 0.13 1.77 4.34 -28.47 -0.12 1.65 16 22 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 23 O -0.53 -6.84 13.37 -35.23 -0.47 -7.31 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.77 6.17 -51.93 -0.32 0.45 16 26 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 27 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.04 0.97 6.18 -51.93 -0.32 0.65 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.14 2.87 6.13 -52.49 -0.32 2.55 16 31 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.12 1.68 6.10 -52.49 -0.32 1.36 16 33 H 0.41 4.39 8.96 -40.82 -0.37 4.03 16 34 H 0.38 3.22 9.12 45.56 0.42 3.64 16 LS Contribution 294.52 15.07 4.44 4.44 Total: -1.00 -30.01 294.52 -6.65 -36.66 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -2.89 Total: 5.89 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.95 Total: -1.98 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.14 Total: -44.95 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.37 Total: -15.49 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.01 -6.65 -36.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036194015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.617 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds