Wall clock time and date at job start Mon Mar 30 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.39676 * 119.99572 * 180.02562 * 2 1 3 13 13 C 1.38984 * 119.89270 * 179.97438 * 12 2 1 14 14 C 1.38252 * 119.75406 * 179.97438 * 13 12 2 15 15 C 1.37759 * 120.00932 * 0.02562 * 14 13 12 16 16 C 1.38968 * 120.92517 * 0.02562 * 15 14 13 17 17 C 1.38604 * 119.89436 * 359.71695 * 12 2 1 18 18 N 1.39545 * 110.22085 * 180.02562 * 16 15 14 19 19 C 1.34363 * 112.25063 * 359.97438 * 18 16 15 20 20 O 1.21285 * 126.43770 * 179.97438 * 19 18 16 21 21 C 1.51159 * 132.75312 * 179.97438 * 15 14 13 22 22 H 1.09003 * 110.50689 * 61.34955 * 21 15 14 23 23 O 1.42904 * 110.51057 * 298.64924 * 21 15 14 24 24 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 25 25 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 26 26 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 27 27 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 28 28 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 29 29 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 30 30 H 1.08002 * 120.12346 * 359.97438 * 13 12 2 31 31 H 1.07997 * 119.99376 * 180.02562 * 14 13 12 32 32 H 1.08001 * 119.96305 * 0.02638 * 17 12 2 33 33 H 0.96996 * 123.87466 * 179.97438 * 18 16 15 34 34 H 0.96694 * 114.00137 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.5589 3.6147 0.6732 8 14 3.4497 3.4098 3.4340 9 1 2.8715 2.4100 4.3673 10 1 4.9134 3.5122 3.6635 11 1 2.8177 4.7325 3.6712 12 6 2.1632 -1.2097 -0.0005 13 6 3.5531 -1.2072 -0.0011 14 6 4.2414 -2.4062 -0.0011 15 6 3.5498 -3.5976 -0.0011 16 6 2.1602 -3.6168 -0.0016 17 6 1.4679 -2.4087 0.0049 18 7 1.6960 -4.9328 -0.0009 19 6 2.6996 -5.8263 -0.0005 20 8 2.5888 -7.0341 0.0006 21 6 3.9946 -5.0423 -0.0016 22 1 4.5751 -5.2634 0.8941 23 8 4.7548 -5.3317 -1.1765 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6084 2.0283 -0.5138 28 1 3.1499 1.1383 -0.5138 29 1 4.0390 4.4388 0.8505 30 1 4.0934 -0.2721 -0.0015 31 1 5.3213 -2.4088 -0.0011 32 1 0.3879 -2.4059 0.0090 33 1 0.7567 -5.1748 -0.0008 34 1 5.0661 -6.2457 -1.2283 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036194015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:54 Heat of formation + Delta-G solvation = -55.070481 kcal Electronic energy + Delta-G solvation = -19163.089762 eV Core-core repulsion = 16060.506572 eV Total energy + Delta-G solvation = -3102.583190 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.48601 -39.98193 -38.15681 -37.27005 -35.80051 -34.64595 -31.92770 -30.68022 -29.41274 -28.39878 -26.25522 -24.21353 -23.26960 -22.35276 -21.29382 -18.96636 -18.77486 -18.53082 -17.80065 -17.44938 -16.69461 -16.37804 -16.05703 -15.68931 -15.44193 -15.31435 -14.73139 -14.37705 -14.05535 -13.87711 -13.64603 -13.44112 -13.09782 -13.01521 -12.65108 -12.60505 -12.22589 -12.08818 -11.88521 -11.65337 -11.54598 -10.88392 -10.60290 -10.41267 -9.17338 -8.35732 -7.90101 -6.33017 0.22300 0.61340 1.36584 1.40209 1.43223 1.53929 1.88355 2.37450 2.58446 2.92311 3.02435 3.11287 3.37491 3.60448 4.00393 4.26944 4.30319 4.45594 4.57314 4.66226 4.70880 4.78962 4.97895 5.03687 5.16830 5.24460 5.42522 5.53424 5.62662 5.71713 5.74288 6.03248 6.09951 6.45734 6.65422 6.79002 6.84890 6.87069 7.38642 8.87019 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.004786 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.658002 B = 5848.552791 C = 6206.843317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.620 5.620 3 C 0.262 3.738 4 C -0.539 4.539 5 H 0.052 0.948 6 C 0.016 3.984 7 N -0.926 5.926 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.254 3.746 13 C -0.226 4.226 14 C -0.001 4.001 15 C -0.227 4.227 16 C 0.189 3.811 17 C -0.228 4.228 18 N -0.643 5.643 19 C 0.508 3.492 20 O -0.532 6.532 21 C 0.137 3.863 22 H 0.126 0.874 23 O -0.545 6.545 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.014 0.986 28 H 0.019 0.981 29 H 0.266 0.734 30 H 0.114 0.886 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.422 0.578 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -13.947 -0.793 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.326 5.326 3 C 0.141 3.859 4 C -0.578 4.578 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.565 5.565 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.147 3.853 13 C -0.249 4.249 14 C -0.020 4.020 15 C -0.232 4.232 16 C 0.092 3.908 17 C -0.254 4.254 18 N -0.288 5.288 19 C 0.295 3.705 20 O -0.409 6.409 21 C 0.076 3.924 22 H 0.143 0.857 23 O -0.353 6.353 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.032 0.968 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.261 0.739 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -2.391 -13.656 -0.972 13.897 hybrid contribution -0.200 0.215 0.863 0.911 sum -2.590 -13.441 -0.109 13.689 Atomic orbital electron populations 1.21703 0.79075 1.02926 1.01346 1.47036 1.05892 1.03558 1.76123 1.18890 0.91452 0.79908 0.95643 1.21796 1.36098 1.06593 0.93314 0.92931 1.25712 0.95181 0.96391 1.01101 1.70036 1.38926 1.14928 1.32653 0.85493 0.77960 0.78072 0.80045 1.19436 1.20434 1.20398 1.17715 0.91419 0.85802 0.90413 1.20794 0.92906 0.98542 1.12698 1.20049 1.00128 0.89015 0.92823 1.19277 0.92536 0.93672 1.17687 1.17667 0.92757 0.84038 0.96349 1.19697 1.00146 0.87755 1.17792 1.43541 1.10907 1.04578 1.69742 1.21721 0.88764 0.86264 0.73731 1.90772 1.86746 1.13008 1.50368 1.20810 0.89444 0.90458 0.91713 0.85675 1.86665 1.71407 1.36093 1.41105 0.92540 0.90047 0.92124 0.96840 0.96311 0.92448 0.86806 0.84176 0.83772 0.73857 0.74839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.84 10.18 127.77 1.30 4.14 16 2 N -0.62 -24.58 2.99 -726.81 -2.17 -26.75 16 3 C 0.26 12.77 4.91 85.64 0.42 13.19 16 4 C -0.54 -28.44 9.39 25.60 0.24 -28.20 16 5 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 6 C 0.02 0.83 5.46 84.66 0.46 1.30 16 7 N -0.93 -52.10 13.29 21.45 0.28 -51.82 16 8 Si 0.96 42.25 29.54 68.60 2.03 44.28 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 12 C 0.25 9.35 6.54 38.16 0.25 9.60 16 13 C -0.23 -8.51 9.22 22.45 0.21 -8.31 16 14 C 0.00 -0.03 10.03 22.16 0.22 0.20 16 15 C -0.23 -6.52 6.03 -19.66 -0.12 -6.64 16 16 C 0.19 5.27 7.10 38.33 0.27 5.54 16 17 C -0.23 -6.80 9.23 22.60 0.21 -6.59 16 18 N -0.64 -15.06 5.88 -303.26 -1.78 -16.84 16 19 C 0.51 12.89 8.39 87.94 0.74 13.62 16 20 O -0.53 -15.69 18.03 -3.05 -0.05 -15.75 16 21 C 0.14 3.24 4.34 29.47 0.13 3.37 16 22 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 23 O -0.54 -12.36 13.37 -148.98 -1.99 -14.35 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.08 2.05 6.17 -2.38 -0.01 2.04 16 26 H 0.06 1.96 8.07 -2.38 -0.02 1.95 16 27 H 0.01 0.70 8.07 -2.38 -0.02 0.68 16 28 H 0.02 0.99 6.18 -2.39 -0.01 0.97 16 29 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 30 H 0.11 4.89 6.13 -2.91 -0.02 4.87 16 31 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 32 H 0.14 3.55 6.10 -2.91 -0.02 3.53 16 33 H 0.42 7.71 8.96 -92.71 -0.83 6.88 16 34 H 0.40 5.55 9.12 -74.06 -0.68 4.87 16 Total: -1.00 -64.29 294.52 0.29 -64.00 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -0.34 Total: 16.00 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 4.33 Total: 1.23 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -3.67 Total: -95.41 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -2.05 Total: -30.09 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -64.29 0.29 -64.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036194015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.929 kcal (2) G-P(sol) polarization free energy of solvation -64.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds