Wall clock time and date at job start Mon Mar 30 2020 05:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 N 1.46500 * 109.46585 * 240.00400 * 2 1 3 5 5 C 1.34773 * 120.00429 * 85.00320 * 4 2 1 6 6 O 1.21443 * 119.99990 * 359.97438 * 5 4 2 7 7 C 1.48826 * 120.00080 * 179.72117 * 5 4 2 8 8 O 1.21503 * 120.00383 * 0.27333 * 7 5 4 9 9 N 1.34777 * 120.00107 * 180.27489 * 7 5 4 10 10 C 1.36126 * 120.00159 * 180.02562 * 9 7 5 11 11 H 1.08002 * 119.99685 * 359.97438 * 10 9 7 12 12 C 1.39582 * 119.99932 * 179.97438 * 10 9 7 13 13 N 1.31014 * 120.00124 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00002 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47483 * 90.00252 * 14 12 10 16 16 H 1.48507 * 109.46904 * 209.99915 * 14 12 10 17 17 H 1.48499 * 109.47134 * 329.99737 * 14 12 10 18 18 C 1.50694 * 109.47093 * 120.00242 * 2 1 3 19 19 C 1.38233 * 120.00146 * 79.72830 * 18 2 1 20 20 C 1.38235 * 119.99952 * 179.81016 * 19 18 2 21 21 C 1.38231 * 119.99942 * 0.39519 * 20 19 18 22 22 C 1.38236 * 120.00175 * 359.85638 * 21 20 19 23 23 C 1.38235 * 119.99885 * 359.95495 * 22 21 20 24 24 H 1.09003 * 109.46937 * 299.99956 * 1 2 3 25 25 H 1.08998 * 109.47131 * 59.99895 * 1 2 3 26 26 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99459 * 264.99431 * 4 2 1 28 28 H 0.97000 * 120.00140 * 359.97438 * 9 7 5 29 29 H 0.96999 * 120.00271 * 180.02562 * 13 12 10 30 30 H 1.07998 * 120.00035 * 359.97438 * 19 18 2 31 31 H 1.08005 * 120.00087 * 180.22773 * 20 19 18 32 32 H 1.08002 * 119.99640 * 179.83642 * 21 20 19 33 33 H 1.08003 * 120.00105 * 179.97438 * 22 21 20 34 34 H 1.07997 * 119.99742 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8579 1.1600 -2.4118 7 6 2.6489 -0.7183 -3.5708 8 8 2.9378 -1.8972 -3.5164 9 7 2.7829 -0.0445 -4.7304 10 6 3.2414 -0.6850 -5.8407 11 1 3.4982 -1.7329 -5.7922 12 6 3.3796 0.0127 -7.0417 13 7 3.8205 -0.6038 -8.1104 14 14 2.9348 1.8250 -7.1257 15 1 4.1301 2.6438 -6.8002 16 1 2.4656 2.1566 -8.4951 17 1 1.8548 2.1153 -6.1486 18 6 2.0324 -0.7104 1.2304 19 6 2.0615 -2.0920 1.2673 20 6 2.5260 -2.7436 2.3945 21 6 2.9536 -2.0138 3.4878 22 6 2.9196 -0.6323 3.4528 23 6 2.4588 0.0194 2.3242 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 2.2490 -1.6317 -1.1527 28 1 2.5519 0.8965 -4.7741 29 1 3.9169 -0.1189 -8.9449 30 1 1.7239 -2.6622 0.4146 31 1 2.5522 -3.8230 2.4220 32 1 3.3140 -2.5229 4.3695 33 1 3.2534 -0.0621 4.3072 34 1 2.4319 1.0987 2.2971 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037242560.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:28 Heat of formation + Delta-G solvation = -46.331136 kcal Electronic energy + Delta-G solvation = -18821.403707 eV Core-core repulsion = 15719.199483 eV Total energy + Delta-G solvation = -3102.204224 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.14406 -39.14158 -37.42789 -35.47194 -34.23152 -31.98505 -31.49386 -30.96548 -29.22855 -26.08967 -24.21943 -23.02560 -22.37697 -20.51437 -19.50979 -19.04810 -17.47872 -16.47848 -16.23821 -15.38780 -15.25632 -14.91682 -14.76611 -14.38675 -13.77043 -13.56626 -13.51327 -13.26016 -12.88634 -12.78862 -12.46049 -12.28487 -12.20297 -11.66553 -11.28776 -11.19964 -10.90220 -10.73847 -10.56617 -10.10687 -9.77681 -9.08130 -9.04739 -8.82174 -8.42626 -8.41849 -6.59381 -4.00951 1.15987 1.24681 2.28019 3.04026 3.07174 3.10166 3.25105 3.66205 3.95233 4.13861 4.47707 4.72038 4.75304 4.83908 4.96720 5.11258 5.22544 5.25324 5.35382 5.42633 5.59774 5.70545 5.81043 5.83003 5.93192 6.16249 6.29775 6.35531 6.39056 6.70231 6.82618 7.25510 7.63538 7.91104 8.23133 8.49829 8.73676 9.18612 9.60763 10.50663 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.037482 B = 0.004209 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.836480 B = 6650.150656 C = 7025.901417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.181 3.819 3 H 0.097 0.903 4 N -0.707 5.707 5 C 0.516 3.484 6 O -0.549 6.549 7 C 0.404 3.596 8 O -0.579 6.579 9 N -0.526 5.526 10 C -0.309 4.309 11 H 0.128 0.872 12 C 0.053 3.947 13 N -0.849 5.849 14 Si 0.876 3.124 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.259 1.259 18 C -0.088 4.088 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.109 4.109 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.410 0.590 28 H 0.384 0.616 29 H 0.281 0.719 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 1.316 19.770 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.076 3.924 3 H 0.115 0.885 4 N -0.362 5.362 5 C 0.301 3.699 6 O -0.427 6.427 7 C 0.188 3.812 8 O -0.465 6.465 9 N -0.163 5.163 10 C -0.438 4.438 11 H 0.145 0.855 12 C -0.156 4.156 13 N -0.486 5.486 14 Si 0.701 3.299 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.184 1.184 18 C -0.088 4.088 19 C -0.129 4.129 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.127 4.127 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.247 0.753 28 H 0.219 0.781 29 H 0.092 0.908 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.283 1.398 19.521 20.035 hybrid contribution -0.155 0.886 -0.202 0.921 sum -4.438 2.284 19.319 19.954 Atomic orbital electron populations 1.22171 0.94140 1.02581 1.02701 1.19799 0.94307 0.96813 0.81467 0.88545 1.45830 1.66976 1.14905 1.08444 1.20638 0.77650 0.86644 0.85007 1.90671 1.50504 1.16081 1.85444 1.18821 0.90257 0.87933 0.84146 1.90622 1.56283 1.15268 1.84344 1.41825 1.53804 1.11881 1.08816 1.19567 1.39999 0.98815 0.85455 0.85494 1.25232 0.96235 0.99202 0.94890 1.69440 1.40857 1.37420 1.00905 0.86675 0.80091 0.84001 0.79179 1.18885 1.19524 1.18415 1.19973 0.99397 0.94045 0.95403 1.21035 0.99520 0.93872 0.98459 1.21155 0.98775 1.00054 0.93391 1.21172 1.00106 0.94247 0.98563 1.21122 0.99897 0.94659 0.98061 1.21011 0.98695 0.99962 0.93051 0.91591 0.91371 0.92151 0.75254 0.78146 0.90768 0.85721 0.85839 0.86140 0.85996 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.46 37.16 0.35 -1.55 16 2 C 0.18 2.44 2.78 -69.08 -0.19 2.25 16 3 H 0.10 1.37 7.44 -51.93 -0.39 0.99 16 4 N -0.71 -11.72 5.02 -55.56 -0.28 -11.99 16 5 C 0.52 10.66 7.83 -11.88 -0.09 10.56 16 6 O -0.55 -11.93 16.13 5.42 0.09 -11.84 16 7 C 0.40 9.84 7.82 -11.88 -0.09 9.74 16 8 O -0.58 -15.34 16.03 5.36 0.09 -15.25 16 9 N -0.53 -13.35 5.06 -11.59 -0.06 -13.41 16 10 C -0.31 -8.65 10.16 -15.14 -0.15 -8.80 16 11 H 0.13 3.96 7.36 -52.49 -0.39 3.57 16 12 C 0.05 1.41 5.51 -17.40 -0.10 1.31 16 13 N -0.85 -23.64 13.94 55.53 0.77 -22.87 16 14 Si 0.88 19.36 27.74 -169.99 -4.72 14.65 16 15 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 17 H -0.26 -5.56 6.53 56.52 0.37 -5.19 16 18 C -0.09 -1.04 4.95 -104.63 -0.52 -1.55 16 19 C -0.11 -1.25 9.05 -39.58 -0.36 -1.61 16 20 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 21 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 23 C -0.11 -1.14 9.67 -39.58 -0.38 -1.52 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.41 6.54 6.34 -40.82 -0.26 6.29 16 28 H 0.38 9.13 5.22 -40.82 -0.21 8.92 16 29 H 0.28 7.15 8.30 -40.82 -0.34 6.81 16 30 H 0.12 1.35 6.93 -52.49 -0.36 0.99 16 31 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.12 1.11 8.04 -52.49 -0.42 0.68 16 LS Contribution 300.26 15.07 4.52 4.52 Total: -1.00 -31.15 300.26 -6.04 -37.19 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -3.73 Total: 14.73 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.73 Total: 4.27 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.44 Total: -48.27 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: 0.17 Total: -27.09 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.72 Total: 14.65 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.15 -6.04 -37.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242560.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.138 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds