Wall clock time and date at job start Mon Mar 30 2020 05:12:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09002 * 109.46899 * 2 1
4 4 N 1.46500 * 109.46585 * 240.00400 * 2 1 3
5 5 C 1.34773 * 120.00429 * 85.00320 * 4 2 1
6 6 O 1.21443 * 119.99990 * 359.97438 * 5 4 2
7 7 C 1.48826 * 120.00080 * 179.72117 * 5 4 2
8 8 O 1.21503 * 120.00383 * 0.27333 * 7 5 4
9 9 N 1.34777 * 120.00107 * 180.27489 * 7 5 4
10 10 C 1.36126 * 120.00159 * 180.02562 * 9 7 5
11 11 H 1.08002 * 119.99685 * 359.97438 * 10 9 7
12 12 C 1.39582 * 119.99932 * 179.97438 * 10 9 7
13 13 N 1.31014 * 120.00124 * 180.02562 * 12 10 9
14 14 Si 1.86800 * 120.00002 * 359.97438 * 12 10 9
15 15 H 1.48501 * 109.47483 * 90.00252 * 14 12 10
16 16 H 1.48507 * 109.46904 * 209.99915 * 14 12 10
17 17 H 1.48499 * 109.47134 * 329.99737 * 14 12 10
18 18 C 1.50694 * 109.47093 * 120.00242 * 2 1 3
19 19 C 1.38233 * 120.00146 * 79.72830 * 18 2 1
20 20 C 1.38235 * 119.99952 * 179.81016 * 19 18 2
21 21 C 1.38231 * 119.99942 * 0.39519 * 20 19 18
22 22 C 1.38236 * 120.00175 * 359.85638 * 21 20 19
23 23 C 1.38235 * 119.99885 * 359.95495 * 22 21 20
24 24 H 1.09003 * 109.46937 * 299.99956 * 1 2 3
25 25 H 1.08998 * 109.47131 * 59.99895 * 1 2 3
26 26 H 1.08994 * 109.47191 * 179.97438 * 1 2 3
27 27 H 0.97000 * 119.99459 * 264.99431 * 4 2 1
28 28 H 0.97000 * 120.00140 * 359.97438 * 9 7 5
29 29 H 0.96999 * 120.00271 * 180.02562 * 13 12 10
30 30 H 1.07998 * 120.00035 * 359.97438 * 19 18 2
31 31 H 1.08005 * 120.00087 * 180.22773 * 20 19 18
32 32 H 1.08002 * 119.99640 * 179.83642 * 21 20 19
33 33 H 1.08003 * 120.00105 * 179.97438 * 22 21 20
34 34 H 1.07997 * 119.99742 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6905 -1.1963
5 6 2.1470 -0.0182 -2.3572
6 8 1.8579 1.1600 -2.4118
7 6 2.6489 -0.7183 -3.5708
8 8 2.9378 -1.8972 -3.5164
9 7 2.7829 -0.0445 -4.7304
10 6 3.2414 -0.6850 -5.8407
11 1 3.4982 -1.7329 -5.7922
12 6 3.3796 0.0127 -7.0417
13 7 3.8205 -0.6038 -8.1104
14 14 2.9348 1.8250 -7.1257
15 1 4.1301 2.6438 -6.8002
16 1 2.4656 2.1566 -8.4951
17 1 1.8548 2.1153 -6.1486
18 6 2.0324 -0.7104 1.2304
19 6 2.0615 -2.0920 1.2673
20 6 2.5260 -2.7436 2.3945
21 6 2.9536 -2.0138 3.4878
22 6 2.9196 -0.6323 3.4528
23 6 2.4588 0.0194 2.3242
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3633 -1.0276 -0.0005
27 1 2.2490 -1.6317 -1.1527
28 1 2.5519 0.8965 -4.7741
29 1 3.9169 -0.1189 -8.9449
30 1 1.7239 -2.6622 0.4146
31 1 2.5522 -3.8230 2.4220
32 1 3.3140 -2.5229 4.3695
33 1 3.2534 -0.0621 4.3072
34 1 2.4319 1.0987 2.2971
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000037242560.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:12:28
Heat of formation + Delta-G solvation = -46.331136 kcal
Electronic energy + Delta-G solvation = -18821.403707 eV
Core-core repulsion = 15719.199483 eV
Total energy + Delta-G solvation = -3102.204224 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 262.110 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.14406 -39.14158 -37.42789 -35.47194 -34.23152 -31.98505 -31.49386 -30.96548
-29.22855 -26.08967 -24.21943 -23.02560 -22.37697 -20.51437 -19.50979 -19.04810
-17.47872 -16.47848 -16.23821 -15.38780 -15.25632 -14.91682 -14.76611 -14.38675
-13.77043 -13.56626 -13.51327 -13.26016 -12.88634 -12.78862 -12.46049 -12.28487
-12.20297 -11.66553 -11.28776 -11.19964 -10.90220 -10.73847 -10.56617 -10.10687
-9.77681 -9.08130 -9.04739 -8.82174 -8.42626 -8.41849 -6.59381 -4.00951
1.15987 1.24681 2.28019 3.04026 3.07174 3.10166 3.25105 3.66205
3.95233 4.13861 4.47707 4.72038 4.75304 4.83908 4.96720 5.11258
5.22544 5.25324 5.35382 5.42633 5.59774 5.70545 5.81043 5.83003
5.93192 6.16249 6.29775 6.35531 6.39056 6.70231 6.82618 7.25510
7.63538 7.91104 8.23133 8.49829 8.73676 9.18612 9.60763 10.50663
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.037482 B = 0.004209 C = 0.003984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 746.836480 B = 6650.150656 C = 7025.901417
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.181 3.819
3 H 0.097 0.903
4 N -0.707 5.707
5 C 0.516 3.484
6 O -0.549 6.549
7 C 0.404 3.596
8 O -0.579 6.579
9 N -0.526 5.526
10 C -0.309 4.309
11 H 0.128 0.872
12 C 0.053 3.947
13 N -0.849 5.849
14 Si 0.876 3.124
15 H -0.264 1.264
16 H -0.270 1.270
17 H -0.259 1.259
18 C -0.088 4.088
19 C -0.111 4.111
20 C -0.116 4.116
21 C -0.123 4.123
22 C -0.119 4.119
23 C -0.109 4.109
24 H 0.065 0.935
25 H 0.067 0.933
26 H 0.059 0.941
27 H 0.410 0.590
28 H 0.384 0.616
29 H 0.281 0.719
30 H 0.125 0.875
31 H 0.124 0.876
32 H 0.121 0.879
33 H 0.122 0.878
34 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.322 1.316 19.770 20.279
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.076 3.924
3 H 0.115 0.885
4 N -0.362 5.362
5 C 0.301 3.699
6 O -0.427 6.427
7 C 0.188 3.812
8 O -0.465 6.465
9 N -0.163 5.163
10 C -0.438 4.438
11 H 0.145 0.855
12 C -0.156 4.156
13 N -0.486 5.486
14 Si 0.701 3.299
15 H -0.189 1.189
16 H -0.195 1.195
17 H -0.184 1.184
18 C -0.088 4.088
19 C -0.129 4.129
20 C -0.134 4.134
21 C -0.141 4.141
22 C -0.137 4.137
23 C -0.127 4.127
24 H 0.084 0.916
25 H 0.086 0.914
26 H 0.078 0.922
27 H 0.247 0.753
28 H 0.219 0.781
29 H 0.092 0.908
30 H 0.143 0.857
31 H 0.142 0.858
32 H 0.139 0.861
33 H 0.140 0.860
34 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -4.283 1.398 19.521 20.035
hybrid contribution -0.155 0.886 -0.202 0.921
sum -4.438 2.284 19.319 19.954
Atomic orbital electron populations
1.22171 0.94140 1.02581 1.02701 1.19799 0.94307 0.96813 0.81467
0.88545 1.45830 1.66976 1.14905 1.08444 1.20638 0.77650 0.86644
0.85007 1.90671 1.50504 1.16081 1.85444 1.18821 0.90257 0.87933
0.84146 1.90622 1.56283 1.15268 1.84344 1.41825 1.53804 1.11881
1.08816 1.19567 1.39999 0.98815 0.85455 0.85494 1.25232 0.96235
0.99202 0.94890 1.69440 1.40857 1.37420 1.00905 0.86675 0.80091
0.84001 0.79179 1.18885 1.19524 1.18415 1.19973 0.99397 0.94045
0.95403 1.21035 0.99520 0.93872 0.98459 1.21155 0.98775 1.00054
0.93391 1.21172 1.00106 0.94247 0.98563 1.21122 0.99897 0.94659
0.98061 1.21011 0.98695 0.99962 0.93051 0.91591 0.91371 0.92151
0.75254 0.78146 0.90768 0.85721 0.85839 0.86140 0.85996 0.85798
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.91 9.46 37.16 0.35 -1.55 16
2 C 0.18 2.44 2.78 -69.08 -0.19 2.25 16
3 H 0.10 1.37 7.44 -51.93 -0.39 0.99 16
4 N -0.71 -11.72 5.02 -55.56 -0.28 -11.99 16
5 C 0.52 10.66 7.83 -11.88 -0.09 10.56 16
6 O -0.55 -11.93 16.13 5.42 0.09 -11.84 16
7 C 0.40 9.84 7.82 -11.88 -0.09 9.74 16
8 O -0.58 -15.34 16.03 5.36 0.09 -15.25 16
9 N -0.53 -13.35 5.06 -11.59 -0.06 -13.41 16
10 C -0.31 -8.65 10.16 -15.14 -0.15 -8.80 16
11 H 0.13 3.96 7.36 -52.49 -0.39 3.57 16
12 C 0.05 1.41 5.51 -17.40 -0.10 1.31 16
13 N -0.85 -23.64 13.94 55.53 0.77 -22.87 16
14 Si 0.88 19.36 27.74 -169.99 -4.72 14.65 16
15 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16
16 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16
17 H -0.26 -5.56 6.53 56.52 0.37 -5.19 16
18 C -0.09 -1.04 4.95 -104.63 -0.52 -1.55 16
19 C -0.11 -1.25 9.05 -39.58 -0.36 -1.61 16
20 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16
21 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16
22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16
23 C -0.11 -1.14 9.67 -39.58 -0.38 -1.52 16
24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
25 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16
26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
27 H 0.41 6.54 6.34 -40.82 -0.26 6.29 16
28 H 0.38 9.13 5.22 -40.82 -0.21 8.92 16
29 H 0.28 7.15 8.30 -40.82 -0.34 6.81 16
30 H 0.12 1.35 6.93 -52.49 -0.36 0.99 16
31 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16
32 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16
33 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16
34 H 0.12 1.11 8.04 -52.49 -0.42 0.68 16
LS Contribution 300.26 15.07 4.52 4.52
Total: -1.00 -31.15 300.26 -6.04 -37.19
By element:
Atomic # 1 Polarization: 18.47 SS G_CDS: -3.73 Total: 14.73 kcal
Atomic # 6 Polarization: 6.99 SS G_CDS: -2.73 Total: 4.27 kcal
Atomic # 7 Polarization: -48.71 SS G_CDS: 0.44 Total: -48.27 kcal
Atomic # 8 Polarization: -27.27 SS G_CDS: 0.17 Total: -27.09 kcal
Atomic # 14 Polarization: 19.36 SS G_CDS: -4.72 Total: 14.65 kcal
Total LS contribution 4.52 Total: 4.52 kcal
Total: -31.15 -6.04 -37.19 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037242560.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.138 kcal
(2) G-P(sol) polarization free energy of solvation -31.150 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.288 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.193 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.331 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds