Wall clock time and date at job start Mon Mar 30 2020 05:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 N 1.46500 * 109.46585 * 240.00400 * 2 1 3 5 5 C 1.34773 * 120.00429 * 85.00320 * 4 2 1 6 6 O 1.21443 * 119.99990 * 359.97438 * 5 4 2 7 7 C 1.48826 * 120.00080 * 179.72117 * 5 4 2 8 8 O 1.21503 * 120.00383 * 0.27333 * 7 5 4 9 9 N 1.34777 * 120.00107 * 180.27489 * 7 5 4 10 10 C 1.36126 * 120.00159 * 180.02562 * 9 7 5 11 11 H 1.08002 * 119.99685 * 359.97438 * 10 9 7 12 12 C 1.39582 * 119.99932 * 179.97438 * 10 9 7 13 13 N 1.31014 * 120.00124 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00002 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47483 * 90.00252 * 14 12 10 16 16 H 1.48507 * 109.46904 * 209.99915 * 14 12 10 17 17 H 1.48499 * 109.47134 * 329.99737 * 14 12 10 18 18 C 1.50694 * 109.47093 * 120.00242 * 2 1 3 19 19 C 1.38233 * 120.00146 * 79.72830 * 18 2 1 20 20 C 1.38235 * 119.99952 * 179.81016 * 19 18 2 21 21 C 1.38231 * 119.99942 * 0.39519 * 20 19 18 22 22 C 1.38236 * 120.00175 * 359.85638 * 21 20 19 23 23 C 1.38235 * 119.99885 * 359.95495 * 22 21 20 24 24 H 1.09003 * 109.46937 * 299.99956 * 1 2 3 25 25 H 1.08998 * 109.47131 * 59.99895 * 1 2 3 26 26 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99459 * 264.99431 * 4 2 1 28 28 H 0.97000 * 120.00140 * 359.97438 * 9 7 5 29 29 H 0.96999 * 120.00271 * 180.02562 * 13 12 10 30 30 H 1.07998 * 120.00035 * 359.97438 * 19 18 2 31 31 H 1.08005 * 120.00087 * 180.22773 * 20 19 18 32 32 H 1.08002 * 119.99640 * 179.83642 * 21 20 19 33 33 H 1.08003 * 120.00105 * 179.97438 * 22 21 20 34 34 H 1.07997 * 119.99742 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8579 1.1600 -2.4118 7 6 2.6489 -0.7183 -3.5708 8 8 2.9378 -1.8972 -3.5164 9 7 2.7829 -0.0445 -4.7304 10 6 3.2414 -0.6850 -5.8407 11 1 3.4982 -1.7329 -5.7922 12 6 3.3796 0.0127 -7.0417 13 7 3.8205 -0.6038 -8.1104 14 14 2.9348 1.8250 -7.1257 15 1 4.1301 2.6438 -6.8002 16 1 2.4656 2.1566 -8.4951 17 1 1.8548 2.1153 -6.1486 18 6 2.0324 -0.7104 1.2304 19 6 2.0615 -2.0920 1.2673 20 6 2.5260 -2.7436 2.3945 21 6 2.9536 -2.0138 3.4878 22 6 2.9196 -0.6323 3.4528 23 6 2.4588 0.0194 2.3242 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 2.2490 -1.6317 -1.1527 28 1 2.5519 0.8965 -4.7741 29 1 3.9169 -0.1189 -8.9449 30 1 1.7239 -2.6622 0.4146 31 1 2.5522 -3.8230 2.4220 32 1 3.3140 -2.5229 4.3695 33 1 3.2534 -0.0621 4.3072 34 1 2.4319 1.0987 2.2971 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037242560.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:27 Heat of formation + Delta-G solvation = -68.066752 kcal Electronic energy + Delta-G solvation = -18822.346234 eV Core-core repulsion = 15719.199483 eV Total energy + Delta-G solvation = -3103.146751 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.61523 -40.33010 -39.18755 -36.88004 -36.13973 -33.99925 -32.71256 -31.76514 -30.16441 -28.03462 -25.54284 -24.14290 -23.46265 -21.66696 -21.25118 -20.88666 -19.01203 -17.84058 -17.63372 -16.99420 -16.65800 -16.35863 -16.05520 -15.45917 -15.30853 -14.99729 -14.79164 -14.48085 -14.42420 -14.25049 -14.01829 -13.37045 -13.12005 -13.09654 -12.61939 -12.57002 -12.47563 -12.01197 -11.95636 -11.78311 -11.72399 -10.49374 -10.41265 -10.32917 -9.83071 -9.68476 -8.63661 -6.17894 0.35476 0.48578 0.50251 1.28507 1.32834 1.38743 1.71224 2.09585 2.26406 2.85464 3.05124 3.06241 3.52794 3.78838 3.92912 4.11402 4.25446 4.26705 4.31160 4.60388 4.63280 4.71163 4.85994 5.03053 5.12792 5.19243 5.24682 5.26314 5.54924 5.62136 5.64485 5.72486 6.04411 6.10235 6.34742 6.56673 6.87668 7.12755 7.60316 8.50827 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.037482 B = 0.004209 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.836480 B = 6650.150656 C = 7025.901417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.180 3.820 3 H 0.092 0.908 4 N -0.689 5.689 5 C 0.526 3.474 6 O -0.557 6.557 7 C 0.404 3.596 8 O -0.604 6.604 9 N -0.530 5.530 10 C -0.340 4.340 11 H 0.078 0.922 12 C 0.012 3.988 13 N -0.891 5.891 14 Si 0.948 3.052 15 H -0.252 1.252 16 H -0.256 1.256 17 H -0.248 1.248 18 C -0.103 4.103 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.116 4.116 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.413 0.587 28 H 0.393 0.607 29 H 0.291 0.709 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 2.956 22.174 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.076 3.924 3 H 0.110 0.890 4 N -0.342 5.342 5 C 0.308 3.692 6 O -0.436 6.436 7 C 0.189 3.811 8 O -0.492 6.492 9 N -0.168 5.168 10 C -0.470 4.470 11 H 0.096 0.904 12 C -0.193 4.193 13 N -0.528 5.528 14 Si 0.768 3.232 15 H -0.176 1.176 16 H -0.180 1.180 17 H -0.172 1.172 18 C -0.103 4.103 19 C -0.145 4.145 20 C -0.142 4.142 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.135 4.135 24 H 0.109 0.891 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.251 0.749 28 H 0.230 0.770 29 H 0.101 0.899 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.829 3.017 21.951 22.677 hybrid contribution 0.035 0.223 -0.766 0.799 sum -4.794 3.239 21.185 21.961 Atomic orbital electron populations 1.22131 0.92874 1.03035 1.03023 1.20016 0.95286 0.96394 0.80670 0.88980 1.45877 1.65163 1.14998 1.08199 1.19853 0.78129 0.86348 0.84869 1.90669 1.51260 1.16101 1.85557 1.19647 0.88537 0.87770 0.85112 1.90600 1.56731 1.16699 1.85125 1.41691 1.54430 1.12227 1.08482 1.19182 1.42926 0.97357 0.87501 0.90430 1.26087 0.95179 1.04418 0.93661 1.69545 1.41614 1.39877 1.01792 0.85588 0.80468 0.77047 0.80109 1.17559 1.17990 1.17171 1.19847 1.01109 0.94267 0.95120 1.21130 1.00409 0.93875 0.99132 1.21422 0.98428 1.01133 0.93178 1.21548 0.98965 0.94463 0.99044 1.21470 0.98970 0.95034 0.98371 1.21235 0.98441 1.00762 0.93011 0.89096 0.93137 0.91660 0.74893 0.77050 0.89868 0.86157 0.84227 0.83597 0.83444 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.46 71.98 0.68 -2.76 16 2 C 0.18 4.61 2.78 44.25 0.12 4.73 16 3 H 0.09 2.48 7.44 -2.39 -0.02 2.46 16 4 N -0.69 -22.42 5.02 -448.03 -2.25 -24.67 16 5 C 0.53 21.48 7.83 87.08 0.68 22.16 16 6 O -0.56 -23.55 16.13 -3.54 -0.06 -23.61 16 7 C 0.40 20.05 7.82 87.08 0.68 20.73 16 8 O -0.60 -33.07 16.03 -3.72 -0.06 -33.13 16 9 N -0.53 -27.31 5.06 -308.87 -1.56 -28.87 16 10 C -0.34 -19.83 10.16 84.35 0.86 -18.98 16 11 H 0.08 5.18 7.36 -2.91 -0.02 5.16 16 12 C 0.01 0.64 5.51 85.14 0.47 1.11 16 13 N -0.89 -50.83 13.94 21.76 0.30 -50.52 16 14 Si 0.95 39.41 27.74 68.60 1.90 41.32 16 15 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 16 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 17 H -0.25 -9.75 6.53 99.48 0.65 -9.10 16 18 C -0.10 -2.26 4.95 -19.87 -0.10 -2.36 16 19 C -0.13 -2.71 9.05 22.27 0.20 -2.50 16 20 C -0.12 -2.19 10.05 22.27 0.22 -1.96 16 21 C -0.12 -1.86 10.05 22.27 0.22 -1.63 16 22 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 23 C -0.12 -2.14 9.67 22.27 0.22 -1.93 16 24 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.41 13.10 6.34 -92.71 -0.59 12.51 16 28 H 0.39 18.50 5.22 -92.71 -0.48 18.02 16 29 H 0.29 14.93 8.30 -92.71 -0.77 14.16 16 30 H 0.12 2.56 6.93 -2.91 -0.02 2.54 16 31 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.14 2.08 8.04 -2.91 -0.02 2.06 16 Total: -1.00 -69.01 300.26 2.77 -66.24 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: 0.01 Total: 38.27 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 4.48 Total: 14.97 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -3.51 Total: -104.06 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -0.12 Total: -56.73 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.90 Total: 41.32 kcal Total: -69.01 2.77 -66.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242560.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.826 kcal (2) G-P(sol) polarization free energy of solvation -69.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds