Wall clock time and date at job start Mon Mar 30 2020 05:12:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09002 * 109.46899 * 2 1
4 4 N 1.46500 * 109.46585 * 240.00400 * 2 1 3
5 5 C 1.34773 * 120.00429 * 85.00320 * 4 2 1
6 6 O 1.21443 * 119.99990 * 359.97438 * 5 4 2
7 7 C 1.48826 * 120.00080 * 179.72117 * 5 4 2
8 8 O 1.21503 * 120.00383 * 0.27333 * 7 5 4
9 9 N 1.34777 * 120.00107 * 180.27489 * 7 5 4
10 10 C 1.36126 * 120.00159 * 180.02562 * 9 7 5
11 11 H 1.08002 * 119.99685 * 359.97438 * 10 9 7
12 12 C 1.39582 * 119.99932 * 179.97438 * 10 9 7
13 13 N 1.31014 * 120.00124 * 180.02562 * 12 10 9
14 14 Si 1.86800 * 120.00002 * 359.97438 * 12 10 9
15 15 H 1.48501 * 109.47483 * 90.00252 * 14 12 10
16 16 H 1.48507 * 109.46904 * 209.99915 * 14 12 10
17 17 H 1.48499 * 109.47134 * 329.99737 * 14 12 10
18 18 C 1.50694 * 109.47093 * 120.00242 * 2 1 3
19 19 C 1.38233 * 120.00146 * 79.72830 * 18 2 1
20 20 C 1.38235 * 119.99952 * 179.81016 * 19 18 2
21 21 C 1.38231 * 119.99942 * 0.39519 * 20 19 18
22 22 C 1.38236 * 120.00175 * 359.85638 * 21 20 19
23 23 C 1.38235 * 119.99885 * 359.95495 * 22 21 20
24 24 H 1.09003 * 109.46937 * 299.99956 * 1 2 3
25 25 H 1.08998 * 109.47131 * 59.99895 * 1 2 3
26 26 H 1.08994 * 109.47191 * 179.97438 * 1 2 3
27 27 H 0.97000 * 119.99459 * 264.99431 * 4 2 1
28 28 H 0.97000 * 120.00140 * 359.97438 * 9 7 5
29 29 H 0.96999 * 120.00271 * 180.02562 * 13 12 10
30 30 H 1.07998 * 120.00035 * 359.97438 * 19 18 2
31 31 H 1.08005 * 120.00087 * 180.22773 * 20 19 18
32 32 H 1.08002 * 119.99640 * 179.83642 * 21 20 19
33 33 H 1.08003 * 120.00105 * 179.97438 * 22 21 20
34 34 H 1.07997 * 119.99742 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6905 -1.1963
5 6 2.1470 -0.0182 -2.3572
6 8 1.8579 1.1600 -2.4118
7 6 2.6489 -0.7183 -3.5708
8 8 2.9378 -1.8972 -3.5164
9 7 2.7829 -0.0445 -4.7304
10 6 3.2414 -0.6850 -5.8407
11 1 3.4982 -1.7329 -5.7922
12 6 3.3796 0.0127 -7.0417
13 7 3.8205 -0.6038 -8.1104
14 14 2.9348 1.8250 -7.1257
15 1 4.1301 2.6438 -6.8002
16 1 2.4656 2.1566 -8.4951
17 1 1.8548 2.1153 -6.1486
18 6 2.0324 -0.7104 1.2304
19 6 2.0615 -2.0920 1.2673
20 6 2.5260 -2.7436 2.3945
21 6 2.9536 -2.0138 3.4878
22 6 2.9196 -0.6323 3.4528
23 6 2.4588 0.0194 2.3242
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3633 -1.0276 -0.0005
27 1 2.2490 -1.6317 -1.1527
28 1 2.5519 0.8965 -4.7741
29 1 3.9169 -0.1189 -8.9449
30 1 1.7239 -2.6622 0.4146
31 1 2.5522 -3.8230 2.4220
32 1 3.3140 -2.5229 4.3695
33 1 3.2534 -0.0621 4.3072
34 1 2.4319 1.0987 2.2971
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000037242560.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:12:27
Heat of formation + Delta-G solvation = -68.066752 kcal
Electronic energy + Delta-G solvation = -18822.346234 eV
Core-core repulsion = 15719.199483 eV
Total energy + Delta-G solvation = -3103.146751 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 262.110 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.61523 -40.33010 -39.18755 -36.88004 -36.13973 -33.99925 -32.71256 -31.76514
-30.16441 -28.03462 -25.54284 -24.14290 -23.46265 -21.66696 -21.25118 -20.88666
-19.01203 -17.84058 -17.63372 -16.99420 -16.65800 -16.35863 -16.05520 -15.45917
-15.30853 -14.99729 -14.79164 -14.48085 -14.42420 -14.25049 -14.01829 -13.37045
-13.12005 -13.09654 -12.61939 -12.57002 -12.47563 -12.01197 -11.95636 -11.78311
-11.72399 -10.49374 -10.41265 -10.32917 -9.83071 -9.68476 -8.63661 -6.17894
0.35476 0.48578 0.50251 1.28507 1.32834 1.38743 1.71224 2.09585
2.26406 2.85464 3.05124 3.06241 3.52794 3.78838 3.92912 4.11402
4.25446 4.26705 4.31160 4.60388 4.63280 4.71163 4.85994 5.03053
5.12792 5.19243 5.24682 5.26314 5.54924 5.62136 5.64485 5.72486
6.04411 6.10235 6.34742 6.56673 6.87668 7.12755 7.60316 8.50827
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.037482 B = 0.004209 C = 0.003984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 746.836480 B = 6650.150656 C = 7025.901417
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.180 3.820
3 H 0.092 0.908
4 N -0.689 5.689
5 C 0.526 3.474
6 O -0.557 6.557
7 C 0.404 3.596
8 O -0.604 6.604
9 N -0.530 5.530
10 C -0.340 4.340
11 H 0.078 0.922
12 C 0.012 3.988
13 N -0.891 5.891
14 Si 0.948 3.052
15 H -0.252 1.252
16 H -0.256 1.256
17 H -0.248 1.248
18 C -0.103 4.103
19 C -0.127 4.127
20 C -0.124 4.124
21 C -0.122 4.122
22 C -0.121 4.121
23 C -0.116 4.116
24 H 0.090 0.910
25 H 0.049 0.951
26 H 0.064 0.936
27 H 0.413 0.587
28 H 0.393 0.607
29 H 0.291 0.709
30 H 0.120 0.880
31 H 0.140 0.860
32 H 0.146 0.854
33 H 0.148 0.852
34 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.865 2.956 22.174 22.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.076 3.924
3 H 0.110 0.890
4 N -0.342 5.342
5 C 0.308 3.692
6 O -0.436 6.436
7 C 0.189 3.811
8 O -0.492 6.492
9 N -0.168 5.168
10 C -0.470 4.470
11 H 0.096 0.904
12 C -0.193 4.193
13 N -0.528 5.528
14 Si 0.768 3.232
15 H -0.176 1.176
16 H -0.180 1.180
17 H -0.172 1.172
18 C -0.103 4.103
19 C -0.145 4.145
20 C -0.142 4.142
21 C -0.140 4.140
22 C -0.138 4.138
23 C -0.135 4.135
24 H 0.109 0.891
25 H 0.069 0.931
26 H 0.083 0.917
27 H 0.251 0.749
28 H 0.230 0.770
29 H 0.101 0.899
30 H 0.138 0.862
31 H 0.158 0.842
32 H 0.164 0.836
33 H 0.166 0.834
34 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -4.829 3.017 21.951 22.677
hybrid contribution 0.035 0.223 -0.766 0.799
sum -4.794 3.239 21.185 21.961
Atomic orbital electron populations
1.22131 0.92874 1.03035 1.03023 1.20016 0.95286 0.96394 0.80670
0.88980 1.45877 1.65163 1.14998 1.08199 1.19853 0.78129 0.86348
0.84869 1.90669 1.51260 1.16101 1.85557 1.19647 0.88537 0.87770
0.85112 1.90600 1.56731 1.16699 1.85125 1.41691 1.54430 1.12227
1.08482 1.19182 1.42926 0.97357 0.87501 0.90430 1.26087 0.95179
1.04418 0.93661 1.69545 1.41614 1.39877 1.01792 0.85588 0.80468
0.77047 0.80109 1.17559 1.17990 1.17171 1.19847 1.01109 0.94267
0.95120 1.21130 1.00409 0.93875 0.99132 1.21422 0.98428 1.01133
0.93178 1.21548 0.98965 0.94463 0.99044 1.21470 0.98970 0.95034
0.98371 1.21235 0.98441 1.00762 0.93011 0.89096 0.93137 0.91660
0.74893 0.77050 0.89868 0.86157 0.84227 0.83597 0.83444 0.84519
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.44 9.46 71.98 0.68 -2.76 16
2 C 0.18 4.61 2.78 44.25 0.12 4.73 16
3 H 0.09 2.48 7.44 -2.39 -0.02 2.46 16
4 N -0.69 -22.42 5.02 -448.03 -2.25 -24.67 16
5 C 0.53 21.48 7.83 87.08 0.68 22.16 16
6 O -0.56 -23.55 16.13 -3.54 -0.06 -23.61 16
7 C 0.40 20.05 7.82 87.08 0.68 20.73 16
8 O -0.60 -33.07 16.03 -3.72 -0.06 -33.13 16
9 N -0.53 -27.31 5.06 -308.87 -1.56 -28.87 16
10 C -0.34 -19.83 10.16 84.35 0.86 -18.98 16
11 H 0.08 5.18 7.36 -2.91 -0.02 5.16 16
12 C 0.01 0.64 5.51 85.14 0.47 1.11 16
13 N -0.89 -50.83 13.94 21.76 0.30 -50.52 16
14 Si 0.95 39.41 27.74 68.60 1.90 41.32 16
15 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16
16 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16
17 H -0.25 -9.75 6.53 99.48 0.65 -9.10 16
18 C -0.10 -2.26 4.95 -19.87 -0.10 -2.36 16
19 C -0.13 -2.71 9.05 22.27 0.20 -2.50 16
20 C -0.12 -2.19 10.05 22.27 0.22 -1.96 16
21 C -0.12 -1.86 10.05 22.27 0.22 -1.63 16
22 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16
23 C -0.12 -2.14 9.67 22.27 0.22 -1.93 16
24 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16
25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16
26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16
27 H 0.41 13.10 6.34 -92.71 -0.59 12.51 16
28 H 0.39 18.50 5.22 -92.71 -0.48 18.02 16
29 H 0.29 14.93 8.30 -92.71 -0.77 14.16 16
30 H 0.12 2.56 6.93 -2.91 -0.02 2.54 16
31 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16
32 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16
33 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16
34 H 0.14 2.08 8.04 -2.91 -0.02 2.06 16
Total: -1.00 -69.01 300.26 2.77 -66.24
By element:
Atomic # 1 Polarization: 38.26 SS G_CDS: 0.01 Total: 38.27 kcal
Atomic # 6 Polarization: 10.49 SS G_CDS: 4.48 Total: 14.97 kcal
Atomic # 7 Polarization: -100.56 SS G_CDS: -3.51 Total: -104.06 kcal
Atomic # 8 Polarization: -56.62 SS G_CDS: -0.12 Total: -56.73 kcal
Atomic # 14 Polarization: 39.41 SS G_CDS: 1.90 Total: 41.32 kcal
Total: -69.01 2.77 -66.24 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037242560.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.826 kcal
(2) G-P(sol) polarization free energy of solvation -69.012 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.839 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.240 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.067 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds