Wall clock time and date at job start Mon Mar 30 2020 05:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47139 * 2 1 4 4 N 1.46498 * 109.47207 * 120.00313 * 2 1 3 5 5 C 1.34783 * 119.99434 * 275.00081 * 4 2 1 6 6 O 1.21434 * 120.00672 * 359.97438 * 5 4 2 7 7 C 1.48835 * 119.99387 * 180.02562 * 5 4 2 8 8 O 1.21506 * 119.99971 * 359.97438 * 7 5 4 9 9 N 1.34774 * 119.99824 * 180.02562 * 7 5 4 10 10 C 1.36119 * 120.00041 * 180.02562 * 9 7 5 11 11 H 1.07999 * 120.00014 * 359.97438 * 10 9 7 12 12 C 1.39589 * 120.00064 * 179.97438 * 10 9 7 13 13 N 1.31015 * 119.99747 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99980 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47153 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47136 * 119.99945 * 14 12 10 17 17 H 1.48495 * 109.46921 * 239.99764 * 14 12 10 18 18 C 1.50696 * 109.47129 * 240.00401 * 2 1 3 19 19 C 1.38230 * 120.00346 * 99.99630 * 18 2 1 20 20 C 1.38235 * 120.00326 * 180.02562 * 19 18 2 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38239 * 120.00062 * 0.02871 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97128 * 22 21 20 24 24 H 1.09002 * 109.46941 * 59.99516 * 1 2 3 25 25 H 1.08997 * 109.47139 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47087 * 299.99750 * 1 2 3 27 27 H 0.97001 * 120.00226 * 94.99909 * 4 2 1 28 28 H 0.97001 * 119.99903 * 359.97438 * 9 7 5 29 29 H 0.97007 * 119.99507 * 179.97438 * 13 12 10 30 30 H 1.08000 * 120.00356 * 359.97438 * 19 18 2 31 31 H 1.08000 * 120.00616 * 179.70664 * 20 19 18 32 32 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 33 33 H 1.08005 * 120.00087 * 180.02562 * 22 21 20 34 34 H 1.07999 * 120.00181 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8587 1.1601 2.4116 7 6 2.6437 -0.7198 3.5722 8 8 2.9327 -1.8987 3.5175 9 7 2.7719 -0.0476 4.7333 10 6 3.2267 -0.6891 5.8444 11 1 3.4843 -1.7367 5.7957 12 6 3.3600 0.0073 7.0468 13 7 3.0479 1.2783 7.1058 14 14 3.9833 -0.8732 8.5718 15 1 4.2633 -2.2941 8.2434 16 1 5.2295 -0.2195 9.0462 17 1 2.9522 -0.8061 9.6383 18 6 2.0323 -0.7103 -1.2305 19 6 2.4587 0.0195 -2.3243 20 6 2.9189 -0.6321 -3.4532 21 6 2.9534 -2.0135 -3.4881 22 6 2.5270 -2.7434 -2.3943 23 6 2.0667 -2.0919 -1.2653 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.2491 -1.6318 1.1525 28 1 2.5409 0.8935 4.7769 29 1 3.1401 1.7621 7.9415 30 1 2.4314 1.0988 -2.2973 31 1 3.2476 -0.0620 -4.3096 32 1 3.3126 -2.5227 -4.3702 33 1 2.5543 -3.8228 -2.4214 34 1 1.7340 -2.6621 -0.4106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037242562.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:31 Heat of formation + Delta-G solvation = -52.972561 kcal Electronic energy + Delta-G solvation = -18759.211325 eV Core-core repulsion = 15656.719107 eV Total energy + Delta-G solvation = -3102.492218 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.03369 -39.01702 -37.25517 -35.35184 -34.19386 -31.65043 -31.27282 -30.90012 -29.16053 -25.94206 -24.21630 -23.01940 -22.43248 -20.50247 -19.43963 -18.37719 -17.49020 -16.46130 -16.09138 -15.33114 -15.14385 -14.77041 -14.60647 -14.27297 -13.91424 -13.62133 -13.47146 -13.25772 -12.82543 -12.66796 -12.21639 -12.12612 -11.77641 -11.59363 -11.21827 -11.14853 -10.83743 -10.51419 -10.41056 -10.34266 -9.73515 -9.03569 -8.96817 -8.72955 -8.26745 -8.22805 -6.67499 -3.99669 1.20620 1.28806 2.43994 3.13829 3.16054 3.22536 3.39085 3.71218 4.06561 4.27604 4.54441 4.77501 4.87726 5.00552 5.01694 5.17789 5.30041 5.32093 5.42124 5.47511 5.70848 5.85028 5.88151 5.97010 6.06933 6.23326 6.34376 6.39277 6.45963 6.81944 6.86946 7.30863 7.68602 7.87183 8.32265 8.61597 8.95900 9.31563 9.84762 10.47412 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.039152 B = 0.003927 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.989865 B = 7127.528173 C = 7500.076042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.181 3.819 3 H 0.096 0.904 4 N -0.710 5.710 5 C 0.515 3.485 6 O -0.546 6.546 7 C 0.394 3.606 8 O -0.598 6.598 9 N -0.499 5.499 10 C -0.305 4.305 11 H 0.113 0.887 12 C 0.031 3.969 13 N -0.868 5.868 14 Si 0.938 3.062 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.277 1.277 18 C -0.086 4.086 19 C -0.109 4.109 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.111 4.111 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.409 0.591 28 H 0.405 0.595 29 H 0.280 0.720 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 -3.082 -16.874 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.076 3.924 3 H 0.114 0.886 4 N -0.365 5.365 5 C 0.300 3.700 6 O -0.422 6.422 7 C 0.178 3.822 8 O -0.486 6.486 9 N -0.133 5.133 10 C -0.436 4.436 11 H 0.131 0.869 12 C -0.176 4.176 13 N -0.506 5.506 14 Si 0.764 3.236 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.087 4.087 19 C -0.127 4.127 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.129 4.129 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.246 0.754 28 H 0.240 0.760 29 H 0.090 0.910 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.431 -2.832 -16.703 17.115 hybrid contribution 0.264 -0.206 0.695 0.771 sum -2.167 -3.039 -16.008 16.438 Atomic orbital electron populations 1.22168 0.94233 1.02476 1.02683 1.19777 0.94248 0.96828 0.81538 0.88601 1.45840 1.67346 1.14799 1.08487 1.20700 0.77622 0.86699 0.84968 1.90680 1.50127 1.16049 1.85383 1.18951 0.90764 0.87982 0.84490 1.90580 1.57787 1.15548 1.84724 1.41567 1.51340 1.13171 1.07216 1.19938 1.40133 0.97308 0.86229 0.86915 1.25592 0.96511 0.95559 0.99950 1.69497 1.44106 1.08300 1.28742 0.85667 0.78405 0.79748 0.79802 1.18704 1.20275 1.20284 1.20001 0.99202 0.94040 0.95447 1.21019 0.98657 0.99992 0.93066 1.21118 0.99937 0.94648 0.98048 1.21162 1.00206 0.94250 0.98560 1.21148 0.98888 0.99999 0.93402 1.21037 0.99555 0.93903 0.98407 0.91681 0.92249 0.91326 0.75433 0.75990 0.90966 0.85777 0.86020 0.86187 0.85900 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.46 37.16 0.35 -1.67 16 2 C 0.18 2.59 2.78 -69.08 -0.19 2.40 16 3 H 0.10 1.46 7.44 -51.93 -0.39 1.07 16 4 N -0.71 -12.39 5.02 -55.56 -0.28 -12.67 16 5 C 0.52 11.25 7.83 -11.87 -0.09 11.16 16 6 O -0.55 -12.68 16.13 5.42 0.09 -12.59 16 7 C 0.39 9.99 7.82 -11.87 -0.09 9.89 16 8 O -0.60 -16.10 16.03 5.36 0.09 -16.01 16 9 N -0.50 -13.40 5.25 -11.59 -0.06 -13.46 16 10 C -0.31 -8.44 9.67 -15.15 -0.15 -8.59 16 11 H 0.11 3.19 7.15 -52.49 -0.38 2.81 16 12 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 13 N -0.87 -23.29 13.03 55.53 0.72 -22.56 16 14 Si 0.94 20.08 29.56 -169.99 -5.02 15.05 16 15 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 16 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 18 C -0.09 -1.08 4.95 -104.62 -0.52 -1.59 16 19 C -0.11 -1.20 9.67 -39.59 -0.38 -1.58 16 20 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 22 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 23 C -0.11 -1.31 9.06 -39.58 -0.36 -1.67 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.41 6.85 6.33 -40.82 -0.26 6.59 16 28 H 0.40 10.93 7.35 -40.82 -0.30 10.63 16 29 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 30 H 0.12 1.18 8.04 -52.49 -0.42 0.76 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.12 1.42 6.92 -52.49 -0.36 1.05 16 LS Contribution 303.34 15.07 4.57 4.57 Total: -1.00 -30.80 303.34 -6.39 -37.19 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -3.78 Total: 16.15 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.72 Total: 4.33 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.38 Total: -48.69 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: 0.17 Total: -28.61 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.80 -6.39 -37.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242562.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.781 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds