Wall clock time and date at job start Mon Mar 30 2020 05:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47139 * 2 1 4 4 N 1.46498 * 109.47207 * 120.00313 * 2 1 3 5 5 C 1.34783 * 119.99434 * 275.00081 * 4 2 1 6 6 O 1.21434 * 120.00672 * 359.97438 * 5 4 2 7 7 C 1.48835 * 119.99387 * 180.02562 * 5 4 2 8 8 O 1.21506 * 119.99971 * 359.97438 * 7 5 4 9 9 N 1.34774 * 119.99824 * 180.02562 * 7 5 4 10 10 C 1.36119 * 120.00041 * 180.02562 * 9 7 5 11 11 H 1.07999 * 120.00014 * 359.97438 * 10 9 7 12 12 C 1.39589 * 120.00064 * 179.97438 * 10 9 7 13 13 N 1.31015 * 119.99747 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99980 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47153 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47136 * 119.99945 * 14 12 10 17 17 H 1.48495 * 109.46921 * 239.99764 * 14 12 10 18 18 C 1.50696 * 109.47129 * 240.00401 * 2 1 3 19 19 C 1.38230 * 120.00346 * 99.99630 * 18 2 1 20 20 C 1.38235 * 120.00326 * 180.02562 * 19 18 2 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38239 * 120.00062 * 0.02871 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97128 * 22 21 20 24 24 H 1.09002 * 109.46941 * 59.99516 * 1 2 3 25 25 H 1.08997 * 109.47139 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47087 * 299.99750 * 1 2 3 27 27 H 0.97001 * 120.00226 * 94.99909 * 4 2 1 28 28 H 0.97001 * 119.99903 * 359.97438 * 9 7 5 29 29 H 0.97007 * 119.99507 * 179.97438 * 13 12 10 30 30 H 1.08000 * 120.00356 * 359.97438 * 19 18 2 31 31 H 1.08000 * 120.00616 * 179.70664 * 20 19 18 32 32 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 33 33 H 1.08005 * 120.00087 * 180.02562 * 22 21 20 34 34 H 1.07999 * 120.00181 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8587 1.1601 2.4116 7 6 2.6437 -0.7198 3.5722 8 8 2.9327 -1.8987 3.5175 9 7 2.7719 -0.0476 4.7333 10 6 3.2267 -0.6891 5.8444 11 1 3.4843 -1.7367 5.7957 12 6 3.3600 0.0073 7.0468 13 7 3.0479 1.2783 7.1058 14 14 3.9833 -0.8732 8.5718 15 1 4.2633 -2.2941 8.2434 16 1 5.2295 -0.2195 9.0462 17 1 2.9522 -0.8061 9.6383 18 6 2.0323 -0.7103 -1.2305 19 6 2.4587 0.0195 -2.3243 20 6 2.9189 -0.6321 -3.4532 21 6 2.9534 -2.0135 -3.4881 22 6 2.5270 -2.7434 -2.3943 23 6 2.0667 -2.0919 -1.2653 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.2491 -1.6318 1.1525 28 1 2.5409 0.8935 4.7769 29 1 3.1401 1.7621 7.9415 30 1 2.4314 1.0988 -2.2973 31 1 3.2476 -0.0620 -4.3096 32 1 3.3126 -2.5227 -4.3702 33 1 2.5543 -3.8228 -2.4214 34 1 1.7340 -2.6621 -0.4106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037242562.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:31 Heat of formation + Delta-G solvation = -73.885290 kcal Electronic energy + Delta-G solvation = -18760.118169 eV Core-core repulsion = 15656.719107 eV Total energy + Delta-G solvation = -3103.399062 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.52330 -40.27723 -39.08638 -36.81896 -36.12230 -33.52508 -32.66801 -31.76326 -30.16217 -27.90896 -25.63639 -24.21323 -23.49718 -21.67431 -21.08928 -20.40367 -19.05350 -17.74005 -17.62683 -16.90144 -16.56207 -16.27070 -16.05428 -15.67845 -15.36867 -14.92484 -14.77981 -14.44059 -14.25012 -13.99751 -13.69631 -13.36057 -13.12480 -12.98080 -12.61503 -12.56830 -12.28540 -12.08394 -11.96838 -11.78468 -11.68672 -10.36024 -10.28521 -10.25159 -9.83142 -9.68317 -8.67120 -6.12040 0.35964 0.48783 0.58372 1.41173 1.45726 1.57129 1.81358 2.28998 2.35632 2.86831 3.14175 3.26102 3.53774 3.91875 4.01108 4.11553 4.25569 4.26723 4.30840 4.60339 4.62777 4.71163 4.85960 5.02693 5.13207 5.18277 5.24521 5.28643 5.54877 5.61761 5.64111 5.68723 6.07945 6.14940 6.36428 6.79209 6.99116 7.26435 7.78458 8.48910 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.039152 B = 0.003927 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.989865 B = 7127.528173 C = 7500.076042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.179 3.821 3 H 0.087 0.913 4 N -0.690 5.690 5 C 0.521 3.479 6 O -0.563 6.563 7 C 0.388 3.612 8 O -0.617 6.617 9 N -0.509 5.509 10 C -0.346 4.346 11 H 0.099 0.901 12 C -0.004 4.004 13 N -0.895 5.895 14 Si 1.011 2.989 15 H -0.264 1.264 16 H -0.265 1.265 17 H -0.265 1.265 18 C -0.103 4.103 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.127 4.127 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.413 0.587 28 H 0.401 0.599 29 H 0.289 0.711 30 H 0.135 0.865 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -3.652 -18.198 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.076 3.924 3 H 0.105 0.895 4 N -0.344 5.344 5 C 0.305 3.695 6 O -0.442 6.442 7 C 0.173 3.827 8 O -0.507 6.507 9 N -0.143 5.143 10 C -0.475 4.475 11 H 0.117 0.883 12 C -0.209 4.209 13 N -0.533 5.533 14 Si 0.832 3.168 15 H -0.188 1.188 16 H -0.190 1.190 17 H -0.190 1.190 18 C -0.103 4.103 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.145 4.145 24 H 0.109 0.891 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.251 0.749 28 H 0.236 0.764 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.113 -3.404 -18.069 18.508 hybrid contribution 0.153 -0.045 0.944 0.957 sum -1.960 -3.449 -17.126 17.579 Atomic orbital electron populations 1.22120 0.92992 1.03013 1.02844 1.19974 0.95230 0.96258 0.80941 0.89527 1.45847 1.65508 1.14878 1.08160 1.20066 0.77994 0.86350 0.85138 1.90671 1.51312 1.16523 1.85674 1.19608 0.89872 0.87928 0.85292 1.90544 1.58393 1.16447 1.85343 1.41655 1.51881 1.12978 1.07794 1.20030 1.42753 0.97199 0.87547 0.88328 1.26555 0.95674 0.96210 1.02436 1.69558 1.44098 1.09498 1.30110 0.84631 0.78293 0.78342 0.75580 1.18770 1.19030 1.19015 1.19848 1.01092 0.94368 0.95021 1.21228 0.98548 1.00699 0.93128 1.21466 0.98953 0.95104 0.98268 1.21555 0.98931 0.94380 0.99094 1.21429 0.98369 1.01170 0.93062 1.21129 1.00446 0.93763 0.99173 0.89121 0.91524 0.93474 0.74946 0.76447 0.90061 0.84744 0.83413 0.83446 0.84046 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.46 71.98 0.68 -3.13 16 2 C 0.18 5.08 2.78 44.24 0.12 5.21 16 3 H 0.09 2.63 7.44 -2.39 -0.02 2.61 16 4 N -0.69 -24.32 5.02 -448.03 -2.25 -26.57 16 5 C 0.52 23.27 7.83 87.08 0.68 23.95 16 6 O -0.56 -26.76 16.13 -3.51 -0.06 -26.81 16 7 C 0.39 20.27 7.82 87.08 0.68 20.95 16 8 O -0.62 -34.11 16.03 -3.74 -0.06 -34.17 16 9 N -0.51 -28.31 5.25 -308.87 -1.62 -29.93 16 10 C -0.35 -19.62 9.67 84.35 0.82 -18.80 16 11 H 0.10 5.76 7.15 -2.91 -0.02 5.74 16 12 C 0.00 -0.23 5.51 85.14 0.47 0.24 16 13 N -0.89 -48.28 13.03 21.77 0.28 -47.99 16 14 Si 1.01 40.89 29.56 68.60 2.03 42.92 16 15 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 16 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 17 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 18 C -0.10 -2.45 4.95 -19.87 -0.10 -2.54 16 19 C -0.12 -2.37 9.67 22.27 0.22 -2.15 16 20 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 21 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16 22 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.13 -2.85 9.06 22.27 0.20 -2.64 16 24 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.41 13.94 6.33 -92.71 -0.59 13.35 16 28 H 0.40 22.48 7.35 -92.71 -0.68 21.80 16 29 H 0.29 14.21 8.30 -92.70 -0.77 13.44 16 30 H 0.13 2.33 8.04 -2.91 -0.02 2.30 16 31 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.12 2.69 6.92 -2.91 -0.02 2.67 16 Total: -1.00 -66.83 303.34 2.64 -64.19 By element: Atomic # 1 Polarization: 42.89 SS G_CDS: -0.13 Total: 42.77 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 4.44 Total: 15.60 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -3.59 Total: -104.49 kcal Atomic # 8 Polarization: -60.87 SS G_CDS: -0.12 Total: -60.98 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -66.83 2.64 -64.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242562.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.700 kcal (2) G-P(sol) polarization free energy of solvation -66.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds