Wall clock time and date at job start Mon Mar 30 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46504 * 120.00123 * 2 1 4 4 C 1.50705 * 109.47015 * 89.99901 * 3 2 1 5 5 C 1.38236 * 120.00058 * 269.73106 * 4 3 2 6 6 C 1.38230 * 119.99786 * 179.76636 * 5 4 3 7 7 C 1.38240 * 120.00212 * 0.50255 * 6 5 4 8 8 C 1.38227 * 119.99778 * 359.74812 * 7 6 5 9 9 C 1.38232 * 119.99806 * 90.00107 * 4 3 2 10 10 C 1.34785 * 120.00400 * 180.02562 * 2 1 3 11 11 O 1.21441 * 120.00364 * 185.33131 * 10 2 1 12 12 C 1.48835 * 119.99563 * 5.32913 * 10 2 1 13 13 O 1.21502 * 119.99825 * 5.98912 * 12 10 2 14 14 N 1.34776 * 119.99898 * 185.99796 * 12 10 2 15 15 C 1.36115 * 119.99884 * 179.97438 * 14 12 10 16 16 H 1.08000 * 120.00377 * 0.02562 * 15 14 12 17 17 C 1.39593 * 120.00032 * 179.97438 * 15 14 12 18 18 N 1.31013 * 119.99494 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00311 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46793 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47240 * 119.99697 * 19 17 15 22 22 H 1.48500 * 109.47315 * 240.00308 * 19 17 15 23 23 H 1.09001 * 109.47169 * 95.25214 * 1 2 3 24 24 H 1.08992 * 109.47720 * 335.24894 * 1 2 3 25 25 H 1.09000 * 109.47189 * 215.24766 * 1 2 3 26 26 H 1.09004 * 109.47215 * 209.99684 * 3 2 1 27 27 H 1.08997 * 109.47113 * 329.99848 * 3 2 1 28 28 H 1.07997 * 119.99571 * 359.97438 * 5 4 3 29 29 H 1.08000 * 119.99819 * 180.23069 * 6 5 4 30 30 H 1.07997 * 119.99769 * 179.72546 * 7 6 5 31 31 H 1.07998 * 120.00124 * 179.97438 * 8 7 6 32 32 H 1.07996 * 120.00453 * 0.02562 * 9 4 3 33 33 H 0.97002 * 119.99656 * 359.97438 * 14 12 10 34 34 H 0.97002 * 119.99356 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 6 1.5297 2.5065 2.0706 6 6 1.7578 2.9015 3.3755 7 6 2.9098 2.5024 4.0272 8 6 3.8311 1.7040 3.3757 9 6 3.6005 1.3047 2.0725 10 6 2.1389 -1.1672 -0.0005 11 8 3.3494 -1.1695 0.0972 12 6 1.3995 -2.4533 -0.1208 13 8 0.2023 -2.4487 -0.3276 14 7 2.0581 -3.6230 -0.0002 15 6 1.3818 -4.7992 -0.1097 16 1 0.3176 -4.7952 -0.2936 17 6 2.0640 -6.0107 0.0147 18 7 3.3551 -6.0156 0.2373 19 14 1.1362 -7.6249 -0.1363 20 1 -0.3015 -7.3480 -0.3851 21 1 1.6920 -8.4116 -1.2665 22 1 1.2800 -8.3982 1.1233 23 1 -0.3633 -0.0941 -1.0234 24 1 -0.3634 0.9332 0.4302 25 1 -0.3633 -0.8393 0.5931 26 1 3.1499 1.1384 -0.5138 27 1 1.6084 2.0284 -0.5138 28 1 0.6320 2.8221 1.5599 29 1 1.0381 3.5255 3.8844 30 1 3.0900 2.8147 5.0452 31 1 4.7312 1.3926 3.8847 32 1 4.3207 0.6815 1.5633 33 1 3.0140 -3.6266 0.1646 34 1 3.8291 -6.8575 0.3234 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037243023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:10 Heat of formation + Delta-G solvation = -37.627875 kcal Electronic energy + Delta-G solvation = -19168.258015 eV Core-core repulsion = 16066.431193 eV Total energy + Delta-G solvation = -3101.826822 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.93650 -38.86552 -37.17100 -35.44946 -34.06835 -31.67944 -31.31532 -30.81291 -27.13408 -26.39231 -25.14506 -22.53723 -22.41824 -20.97245 -18.90096 -18.09275 -16.83266 -16.58410 -16.03505 -15.49733 -15.02954 -14.87578 -14.71872 -14.18773 -13.86447 -13.37552 -13.29309 -12.96496 -12.52605 -12.43729 -12.27424 -11.95219 -11.82689 -11.62899 -11.23603 -11.10581 -10.87222 -10.47341 -10.40726 -10.23696 -9.71197 -8.84408 -8.80882 -8.35041 -8.17986 -8.03898 -6.66955 -3.99044 1.35565 1.48885 2.44723 3.13558 3.15693 3.21693 3.33349 3.93848 4.07317 4.25617 4.77748 4.88453 4.95700 5.05249 5.17650 5.19427 5.34402 5.54682 5.58285 5.72241 5.74360 6.01177 6.06371 6.12871 6.15297 6.46020 6.50634 6.59025 6.71259 6.89386 7.07738 7.31245 7.63740 7.78961 8.31024 8.59165 8.96156 9.32434 9.85379 10.48041 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030005 B = 0.004660 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.961404 B = 6007.452149 C = 6383.642338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.597 5.597 3 C 0.154 3.846 4 C -0.103 4.103 5 C -0.108 4.108 6 C -0.128 4.128 7 C -0.122 4.122 8 C -0.124 4.124 9 C -0.092 4.092 10 C 0.514 3.486 11 O -0.544 6.544 12 C 0.395 3.605 13 O -0.590 6.590 14 N -0.500 5.500 15 C -0.305 4.305 16 H 0.113 0.887 17 C 0.031 3.969 18 N -0.869 5.869 19 Si 0.938 3.062 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.404 0.596 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.356 14.404 3.747 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.331 5.331 3 C 0.031 3.969 4 C -0.104 4.104 5 C -0.126 4.126 6 C -0.146 4.146 7 C -0.140 4.140 8 C -0.142 4.142 9 C -0.111 4.111 10 C 0.300 3.700 11 O -0.421 6.421 12 C 0.180 3.820 13 O -0.479 6.479 14 N -0.134 5.134 15 C -0.436 4.436 16 H 0.131 0.869 17 C -0.176 4.176 18 N -0.507 5.507 19 Si 0.763 3.237 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.239 0.761 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.346 14.243 3.664 14.768 hybrid contribution 0.175 -0.742 0.130 0.773 sum -1.171 13.501 3.794 14.073 Atomic orbital electron populations 1.22031 0.78002 1.02306 1.02904 1.47626 1.07814 1.04400 1.73228 1.20358 0.98510 0.85468 0.92544 1.20309 0.94999 0.97790 0.97309 1.21036 0.98575 0.98059 0.94975 1.21074 0.97646 1.00887 0.94994 1.21135 0.94662 0.98528 0.99658 1.21188 0.99600 0.98380 0.95079 1.21305 0.97263 0.97816 0.94713 1.20766 0.87323 0.85694 0.76191 1.90651 1.14384 1.87614 1.49468 1.18917 0.87966 0.84208 0.90947 1.90537 1.14131 1.86213 1.57026 1.41572 1.11810 1.04200 1.55811 1.19920 0.95476 0.81899 1.46270 0.86934 1.25581 0.95650 1.00434 0.95939 1.69494 1.07799 1.29094 1.44349 0.85677 0.79830 0.80059 0.78104 1.18718 1.20297 1.20316 0.92565 0.93190 0.88389 0.89213 0.89835 0.86276 0.86326 0.86413 0.86165 0.85122 0.76068 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 9.23 59.84 0.55 2.00 16 2 N -0.60 -10.63 2.86 -183.70 -0.52 -11.15 16 3 C 0.15 2.22 5.47 -5.19 -0.03 2.19 16 4 C -0.10 -1.46 5.46 -104.62 -0.57 -2.04 16 5 C -0.11 -1.33 9.70 -39.59 -0.38 -1.71 16 6 C -0.13 -1.47 10.05 -39.58 -0.40 -1.86 16 7 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 8 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 9 C -0.09 -1.39 9.56 -39.58 -0.38 -1.76 16 10 C 0.51 11.30 7.70 -11.87 -0.09 11.20 16 11 O -0.54 -12.55 15.30 5.42 0.08 -12.46 16 12 C 0.40 9.92 7.63 -11.87 -0.09 9.83 16 13 O -0.59 -15.34 12.93 5.36 0.07 -15.27 16 14 N -0.50 -13.36 5.24 -11.59 -0.06 -13.42 16 15 C -0.31 -8.37 9.67 -15.15 -0.15 -8.52 16 16 H 0.11 3.15 7.15 -52.49 -0.38 2.77 16 17 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 18 N -0.87 -23.31 13.03 55.53 0.72 -22.59 16 19 Si 0.94 20.04 29.56 -169.99 -5.02 15.02 16 20 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 24 H 0.05 0.62 8.03 -51.93 -0.42 0.21 16 25 H 0.10 1.85 5.95 -51.93 -0.31 1.55 16 26 H 0.09 1.35 7.44 -51.93 -0.39 0.96 16 27 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.13 2.11 7.37 -52.49 -0.39 1.72 16 33 H 0.40 10.92 7.36 -40.82 -0.30 10.62 16 34 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 LS Contribution 300.26 15.07 4.52 4.52 Total: -1.00 -30.27 300.26 -6.47 -36.74 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -3.84 Total: 12.43 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.43 Total: 6.18 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.14 Total: -47.16 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: 0.15 Total: -27.73 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.27 -6.47 -36.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.888 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds