Wall clock time and date at job start Mon Mar 30 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46504 * 120.00123 * 2 1 4 4 C 1.50705 * 109.47015 * 89.99901 * 3 2 1 5 5 C 1.38236 * 120.00058 * 269.73106 * 4 3 2 6 6 C 1.38230 * 119.99786 * 179.76636 * 5 4 3 7 7 C 1.38240 * 120.00212 * 0.50255 * 6 5 4 8 8 C 1.38227 * 119.99778 * 359.74812 * 7 6 5 9 9 C 1.38232 * 119.99806 * 90.00107 * 4 3 2 10 10 C 1.34785 * 120.00400 * 180.02562 * 2 1 3 11 11 O 1.21441 * 120.00364 * 185.33131 * 10 2 1 12 12 C 1.48835 * 119.99563 * 5.32913 * 10 2 1 13 13 O 1.21502 * 119.99825 * 5.98912 * 12 10 2 14 14 N 1.34776 * 119.99898 * 185.99796 * 12 10 2 15 15 C 1.36115 * 119.99884 * 179.97438 * 14 12 10 16 16 H 1.08000 * 120.00377 * 0.02562 * 15 14 12 17 17 C 1.39593 * 120.00032 * 179.97438 * 15 14 12 18 18 N 1.31013 * 119.99494 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00311 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46793 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47240 * 119.99697 * 19 17 15 22 22 H 1.48500 * 109.47315 * 240.00308 * 19 17 15 23 23 H 1.09001 * 109.47169 * 95.25214 * 1 2 3 24 24 H 1.08992 * 109.47720 * 335.24894 * 1 2 3 25 25 H 1.09000 * 109.47189 * 215.24766 * 1 2 3 26 26 H 1.09004 * 109.47215 * 209.99684 * 3 2 1 27 27 H 1.08997 * 109.47113 * 329.99848 * 3 2 1 28 28 H 1.07997 * 119.99571 * 359.97438 * 5 4 3 29 29 H 1.08000 * 119.99819 * 180.23069 * 6 5 4 30 30 H 1.07997 * 119.99769 * 179.72546 * 7 6 5 31 31 H 1.07998 * 120.00124 * 179.97438 * 8 7 6 32 32 H 1.07996 * 120.00453 * 0.02562 * 9 4 3 33 33 H 0.97002 * 119.99656 * 359.97438 * 14 12 10 34 34 H 0.97002 * 119.99356 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 6 1.5297 2.5065 2.0706 6 6 1.7578 2.9015 3.3755 7 6 2.9098 2.5024 4.0272 8 6 3.8311 1.7040 3.3757 9 6 3.6005 1.3047 2.0725 10 6 2.1389 -1.1672 -0.0005 11 8 3.3494 -1.1695 0.0972 12 6 1.3995 -2.4533 -0.1208 13 8 0.2023 -2.4487 -0.3276 14 7 2.0581 -3.6230 -0.0002 15 6 1.3818 -4.7992 -0.1097 16 1 0.3176 -4.7952 -0.2936 17 6 2.0640 -6.0107 0.0147 18 7 3.3551 -6.0156 0.2373 19 14 1.1362 -7.6249 -0.1363 20 1 -0.3015 -7.3480 -0.3851 21 1 1.6920 -8.4116 -1.2665 22 1 1.2800 -8.3982 1.1233 23 1 -0.3633 -0.0941 -1.0234 24 1 -0.3634 0.9332 0.4302 25 1 -0.3633 -0.8393 0.5931 26 1 3.1499 1.1384 -0.5138 27 1 1.6084 2.0284 -0.5138 28 1 0.6320 2.8221 1.5599 29 1 1.0381 3.5255 3.8844 30 1 3.0900 2.8147 5.0452 31 1 4.7312 1.3926 3.8847 32 1 4.3207 0.6815 1.5633 33 1 3.0140 -3.6266 0.1646 34 1 3.8291 -6.8575 0.3234 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037243023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:10 Heat of formation + Delta-G solvation = -57.110157 kcal Electronic energy + Delta-G solvation = -19169.102830 eV Core-core repulsion = 16066.431193 eV Total energy + Delta-G solvation = -3102.671637 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.54158 -40.09387 -38.98238 -37.06911 -35.94856 -33.46262 -32.69157 -31.77249 -28.40648 -28.10236 -26.84027 -24.09499 -23.41933 -22.19211 -20.72505 -19.99146 -18.36005 -17.97435 -17.58390 -16.87734 -16.82045 -16.10330 -15.94995 -15.86355 -15.53433 -14.85397 -14.73116 -14.28234 -13.95903 -13.72280 -13.70496 -13.45043 -13.25354 -12.96410 -12.88227 -12.54149 -12.18299 -12.08288 -12.02388 -11.83840 -11.62792 -10.26578 -10.09920 -9.80935 -9.79056 -9.61827 -8.64761 -6.09266 0.34546 0.51379 0.62695 1.41107 1.45536 1.57132 1.82070 2.28159 2.36907 2.91100 3.15172 3.17332 3.83761 3.87376 4.01838 4.17178 4.28662 4.29698 4.36999 4.55804 4.67176 4.76788 4.83122 5.09731 5.09887 5.17050 5.26647 5.48386 5.56256 5.62247 5.69222 5.70557 6.08300 6.12600 6.34006 6.78216 6.98910 7.30033 7.81716 8.51530 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030005 B = 0.004660 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.961404 B = 6007.452149 C = 6383.642338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.583 5.583 3 C 0.152 3.848 4 C -0.120 4.120 5 C -0.107 4.107 6 C -0.127 4.127 7 C -0.121 4.121 8 C -0.138 4.138 9 C -0.121 4.121 10 C 0.512 3.488 11 O -0.563 6.563 12 C 0.392 3.608 13 O -0.601 6.601 14 N -0.516 5.516 15 C -0.343 4.343 16 H 0.100 0.900 17 C -0.006 4.006 18 N -0.899 5.899 19 Si 1.010 2.990 20 H -0.263 1.263 21 H -0.267 1.267 22 H -0.267 1.267 23 H 0.058 0.942 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.125 0.875 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.398 0.602 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 15.934 4.485 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.315 5.315 3 C 0.031 3.969 4 C -0.121 4.121 5 C -0.126 4.126 6 C -0.145 4.145 7 C -0.139 4.139 8 C -0.156 4.156 9 C -0.139 4.139 10 C 0.297 3.703 11 O -0.442 6.442 12 C 0.177 3.823 13 O -0.491 6.491 14 N -0.150 5.150 15 C -0.472 4.472 16 H 0.117 0.883 17 C -0.210 4.210 18 N -0.537 5.537 19 Si 0.831 3.169 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.192 1.192 23 H 0.077 0.923 24 H 0.116 0.884 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.143 0.857 28 H 0.165 0.835 29 H 0.169 0.831 30 H 0.163 0.837 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.233 0.767 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.840 15.817 4.402 16.662 hybrid contribution 0.619 -1.033 -0.049 1.205 sum -2.221 14.784 4.353 15.571 Atomic orbital electron populations 1.22072 0.76696 1.03558 1.02905 1.47718 1.08706 1.04275 1.70813 1.20635 0.98389 0.84347 0.93536 1.20311 0.95535 0.99149 0.97143 1.21361 0.98790 0.96986 0.95443 1.21516 0.97876 1.00361 0.94748 1.21513 0.94228 0.97373 1.00834 1.21396 1.00698 0.98937 0.94581 1.21296 0.97831 0.98895 0.95908 1.20248 0.86989 0.85998 0.77106 1.90647 1.14892 1.87886 1.50764 1.19601 0.88081 0.85152 0.89502 1.90518 1.14707 1.86896 1.56939 1.41674 1.11513 1.04824 1.56962 1.20001 0.95238 0.83061 1.48943 0.88251 1.26533 0.96466 1.03430 0.94580 1.69566 1.09124 1.30485 1.44569 0.84643 0.78313 0.75340 0.78634 1.18648 1.19168 1.19176 0.92313 0.88411 0.91430 0.90493 0.85656 0.83455 0.83116 0.83702 0.85273 0.87758 0.76734 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.71 9.23 127.77 1.18 3.89 16 2 N -0.58 -20.23 2.86 -853.43 -2.44 -22.67 16 3 C 0.15 4.13 5.47 85.63 0.47 4.60 16 4 C -0.12 -3.24 5.46 -19.86 -0.11 -3.35 16 5 C -0.11 -2.26 9.70 22.27 0.22 -2.05 16 6 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 7 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 8 C -0.14 -3.52 10.05 22.27 0.22 -3.30 16 9 C -0.12 -3.65 9.56 22.27 0.21 -3.44 16 10 C 0.51 22.99 7.70 87.08 0.67 23.66 16 11 O -0.56 -26.96 15.30 -3.53 -0.05 -27.01 16 12 C 0.39 20.30 7.63 87.08 0.66 20.96 16 13 O -0.60 -31.98 12.93 -3.72 -0.05 -32.03 16 14 N -0.52 -28.75 5.24 -308.87 -1.62 -30.37 16 15 C -0.34 -19.43 9.67 84.36 0.82 -18.62 16 16 H 0.10 5.76 7.15 -2.91 -0.02 5.74 16 17 C -0.01 -0.34 5.51 85.14 0.47 0.13 16 18 N -0.90 -49.10 13.03 21.77 0.28 -48.82 16 19 Si 1.01 41.16 29.56 68.60 2.03 43.19 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 23 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 24 H 0.10 2.04 8.03 -2.39 -0.02 2.02 16 25 H 0.07 2.51 5.95 -2.39 -0.01 2.50 16 26 H 0.08 2.30 7.44 -2.38 -0.02 2.29 16 27 H 0.13 2.36 8.01 -2.39 -0.02 2.34 16 28 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 29 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 32 H 0.10 3.61 7.37 -2.91 -0.02 3.59 16 33 H 0.40 22.64 7.36 -92.71 -0.68 21.96 16 34 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 Total: -1.00 -67.92 300.26 3.85 -64.06 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.44 Total: 35.64 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 5.26 Total: 18.00 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -3.77 Total: -101.85 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -0.10 Total: -59.04 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -67.92 3.85 -64.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.952 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds