Wall clock time and date at job start Mon Mar 30 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47200 * 2 1 4 4 C 1.36932 * 120.00251 * 276.12647 * 3 2 1 5 5 H 1.07994 * 120.00087 * 146.60081 * 4 3 2 6 6 C 1.38818 * 119.99943 * 326.60041 * 4 3 2 7 7 N 1.31622 * 119.99891 * 336.10989 * 6 4 3 8 8 Si 1.86798 * 120.00095 * 156.11488 * 6 4 3 9 9 H 1.48503 * 109.46951 * 59.99599 * 8 6 4 10 10 H 1.48496 * 109.46907 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47028 * 300.00055 * 8 6 4 12 12 S 1.65596 * 119.99575 * 96.12659 * 3 2 1 13 13 O 1.42099 * 106.40324 * 156.45900 * 12 3 2 14 14 O 1.42100 * 106.40748 * 23.53711 * 12 3 2 15 15 N 1.65603 * 107.22149 * 269.99861 * 12 3 2 16 16 C 1.46926 * 120.62841 * 270.00688 * 15 12 3 17 17 C 1.53197 * 108.77209 * 233.60266 * 16 15 12 18 18 C 1.53042 * 109.31106 * 305.36690 * 17 16 15 19 19 C 1.53038 * 109.53955 * 61.36337 * 18 17 16 20 20 C 1.46925 * 120.63181 * 89.99912 * 15 12 3 21 21 H 1.08999 * 109.47732 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46644 * 299.99900 * 1 2 3 23 23 H 1.09003 * 109.47628 * 59.99194 * 1 2 3 24 24 H 1.09004 * 109.46257 * 240.00393 * 2 1 3 25 25 H 1.08997 * 109.47280 * 120.00582 * 2 1 3 26 26 H 0.96995 * 119.99970 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.58827 * 113.81532 * 16 15 12 28 28 H 1.09001 * 109.58489 * 353.38896 * 16 15 12 29 29 H 1.08994 * 109.49478 * 185.41172 * 17 16 15 30 30 H 1.09001 * 109.49507 * 65.31364 * 17 16 15 31 31 H 1.08999 * 109.45661 * 181.38646 * 18 17 16 32 32 H 1.09002 * 109.45703 * 301.33722 * 18 17 16 33 33 H 1.09000 * 109.49335 * 58.59182 * 19 18 17 34 34 H 1.09000 * 109.49131 * 178.68114 * 19 18 17 35 35 H 1.08998 * 109.58630 * 6.60763 * 20 15 12 36 36 H 1.09005 * 109.58544 * 246.18204 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1273 2.0690 -1.1791 5 1 1.9523 3.1344 -1.2009 6 6 2.4626 1.3966 -2.3463 7 7 3.1187 0.2572 -2.2842 8 14 1.9830 2.1089 -4.0052 9 1 2.6079 3.4460 -4.1691 10 1 2.4546 1.2067 -5.0863 11 1 0.5057 2.2407 -4.0789 12 16 2.4386 2.1107 1.4260 13 8 3.3488 3.1497 1.0922 14 8 2.7529 1.0645 2.3347 15 7 1.0803 2.8510 2.0170 16 6 0.7677 4.2404 1.6555 17 6 0.5578 5.0486 2.9399 18 6 -0.5102 4.3668 3.7982 19 6 -0.0382 2.9627 4.1827 20 6 0.1648 2.1309 2.9125 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 1.8932 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.3533 -0.2124 -3.0998 27 1 -0.1417 4.2660 1.0550 28 1 1.5953 4.6652 1.0875 29 1 0.2313 6.0570 2.6859 30 1 1.4942 5.0980 3.4957 31 1 -0.6790 4.9532 4.7013 32 1 -1.4393 4.2955 3.2328 33 1 0.9037 3.0319 4.7269 34 1 -0.7890 2.4866 4.8133 35 1 0.5946 1.1639 3.1738 36 1 -0.7937 1.9845 2.4145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044411945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:19 Heat of formation + Delta-G solvation = -79.336627 kcal Electronic energy + Delta-G solvation = -19656.060797 eV Core-core repulsion = 16687.869299 eV Total energy + Delta-G solvation = -2968.191498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.04468 -36.19130 -35.79379 -34.65407 -32.05532 -31.57588 -30.79903 -29.16591 -24.57040 -24.08222 -23.00640 -21.59583 -20.15295 -18.43958 -17.49054 -16.66804 -16.20453 -15.20197 -14.68247 -14.31971 -14.16122 -14.08927 -13.49370 -13.34252 -13.19332 -12.77464 -12.29103 -12.14699 -11.91634 -11.30765 -11.20295 -11.14794 -10.97270 -10.92977 -10.84447 -10.81347 -10.78132 -10.39938 -10.33169 -10.17010 -10.11675 -9.74778 -9.05743 -8.47088 -7.66077 -6.18437 -3.87803 1.70385 3.24893 3.30146 3.32506 3.95717 4.30606 4.67351 4.93191 5.00612 5.02772 5.08500 5.29637 5.53228 5.59905 5.64118 5.73432 5.87079 5.97040 6.05222 6.10980 6.14220 6.19054 6.23716 6.27445 6.40159 6.49637 6.61232 6.66125 6.96734 7.17346 7.35992 7.47770 7.87053 8.49523 9.09720 9.46360 10.83875 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.008134 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.804075 B = 3441.324853 C = 3664.085229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.107 3.893 3 N -0.850 5.850 4 C -0.294 4.294 5 H 0.087 0.913 6 C 0.040 3.960 7 N -0.863 5.863 8 Si 0.911 3.089 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.276 1.276 12 S 2.744 3.256 13 O -0.990 6.990 14 O -1.015 7.015 15 N -1.007 6.007 16 C 0.124 3.876 17 C -0.132 4.132 18 C -0.115 4.115 19 C -0.132 4.132 20 C 0.122 3.878 21 H 0.045 0.955 22 H 0.037 0.963 23 H 0.057 0.943 24 H 0.114 0.886 25 H 0.055 0.945 26 H 0.266 0.734 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.956 4.255 7.415 12.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.021 4.021 3 N -0.684 5.684 4 C -0.428 4.428 5 H 0.105 0.895 6 C -0.167 4.167 7 N -0.503 5.503 8 Si 0.738 3.262 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.201 1.201 12 S 2.761 3.239 13 O -0.973 6.973 14 O -0.998 6.998 15 N -0.845 5.845 16 C -0.002 4.002 17 C -0.172 4.172 18 C -0.152 4.152 19 C -0.171 4.171 20 C -0.004 4.004 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.132 0.868 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.975 4.136 7.802 11.899 hybrid contribution -0.641 0.295 -1.019 1.239 sum -8.616 4.430 6.783 11.827 Atomic orbital electron populations 1.22192 0.98808 0.99805 1.01203 1.21332 0.91582 0.84634 1.04521 1.52918 1.76257 1.20534 1.18668 1.18891 1.46028 0.93499 0.84400 0.89509 1.25237 0.95204 0.96823 0.99417 1.69966 1.34377 1.17191 1.28716 0.86263 0.79012 0.78995 0.81947 1.19865 1.21094 1.20137 1.03511 0.73173 0.73313 0.73940 1.93459 1.60317 1.59189 1.84355 1.93434 1.82904 1.57255 1.66240 1.58365 1.43583 1.21409 1.61095 1.21272 1.01934 0.80930 0.96049 1.21886 0.99466 0.98597 0.97214 1.21453 0.98489 0.95978 0.99321 1.21873 1.01521 0.96114 0.97602 1.21282 0.94023 0.95361 0.89717 0.93636 0.94377 0.92378 0.86826 0.92632 0.92406 0.92003 0.89072 0.91317 0.91762 0.92367 0.91981 0.91732 0.91375 0.89426 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.20 37.16 0.38 -2.66 16 2 C 0.11 2.45 6.01 -4.04 -0.02 2.43 16 3 N -0.85 -21.00 2.91 -59.91 -0.17 -21.17 16 4 C -0.29 -7.73 8.87 -15.06 -0.13 -7.86 16 5 H 0.09 2.22 7.94 -52.49 -0.42 1.81 16 6 C 0.04 1.04 4.99 -17.43 -0.09 0.95 16 7 N -0.86 -23.61 11.27 55.49 0.63 -22.98 16 8 Si 0.91 20.24 29.62 -169.99 -5.03 15.21 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 S 2.74 64.33 6.11 -107.50 -0.66 63.67 16 13 O -0.99 -26.05 15.94 -57.17 -0.91 -26.96 16 14 O -1.01 -25.21 15.27 -57.17 -0.87 -26.08 16 15 N -1.01 -18.37 3.35 -113.52 -0.38 -18.75 16 16 C 0.12 1.99 6.48 -3.71 -0.02 1.96 16 17 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 18 C -0.11 -1.31 5.88 -26.69 -0.16 -1.47 16 19 C -0.13 -1.66 6.08 -26.62 -0.16 -1.82 16 20 C 0.12 1.87 5.62 -3.72 -0.02 1.85 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.65 6.58 -51.92 -0.34 0.31 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.11 2.87 5.31 -51.93 -0.28 2.60 16 25 H 0.06 1.26 6.90 -51.93 -0.36 0.90 16 26 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.60 6.92 -51.93 -0.36 1.24 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.42 6.92 -51.93 -0.36 1.06 16 36 H 0.06 0.84 7.52 -51.93 -0.39 0.45 16 LS Contribution 295.64 15.07 4.46 4.46 Total: -1.00 -31.15 295.64 -8.78 -39.93 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.44 Total: 1.19 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.39 Total: -8.51 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.07 Total: -62.90 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -1.78 Total: -53.04 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Atomic # 16 Polarization: 64.33 SS G_CDS: -0.66 Total: 63.67 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.15 -8.78 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044411945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.402 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds