Wall clock time and date at job start Mon Mar 30 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47200 * 2 1 4 4 C 1.36932 * 120.00251 * 276.12647 * 3 2 1 5 5 H 1.07994 * 120.00087 * 146.60081 * 4 3 2 6 6 C 1.38818 * 119.99943 * 326.60041 * 4 3 2 7 7 N 1.31622 * 119.99891 * 336.10989 * 6 4 3 8 8 Si 1.86798 * 120.00095 * 156.11488 * 6 4 3 9 9 H 1.48503 * 109.46951 * 59.99599 * 8 6 4 10 10 H 1.48496 * 109.46907 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47028 * 300.00055 * 8 6 4 12 12 S 1.65596 * 119.99575 * 96.12659 * 3 2 1 13 13 O 1.42099 * 106.40324 * 156.45900 * 12 3 2 14 14 O 1.42100 * 106.40748 * 23.53711 * 12 3 2 15 15 N 1.65603 * 107.22149 * 269.99861 * 12 3 2 16 16 C 1.46926 * 120.62841 * 270.00688 * 15 12 3 17 17 C 1.53197 * 108.77209 * 233.60266 * 16 15 12 18 18 C 1.53042 * 109.31106 * 305.36690 * 17 16 15 19 19 C 1.53038 * 109.53955 * 61.36337 * 18 17 16 20 20 C 1.46925 * 120.63181 * 89.99912 * 15 12 3 21 21 H 1.08999 * 109.47732 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46644 * 299.99900 * 1 2 3 23 23 H 1.09003 * 109.47628 * 59.99194 * 1 2 3 24 24 H 1.09004 * 109.46257 * 240.00393 * 2 1 3 25 25 H 1.08997 * 109.47280 * 120.00582 * 2 1 3 26 26 H 0.96995 * 119.99970 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.58827 * 113.81532 * 16 15 12 28 28 H 1.09001 * 109.58489 * 353.38896 * 16 15 12 29 29 H 1.08994 * 109.49478 * 185.41172 * 17 16 15 30 30 H 1.09001 * 109.49507 * 65.31364 * 17 16 15 31 31 H 1.08999 * 109.45661 * 181.38646 * 18 17 16 32 32 H 1.09002 * 109.45703 * 301.33722 * 18 17 16 33 33 H 1.09000 * 109.49335 * 58.59182 * 19 18 17 34 34 H 1.09000 * 109.49131 * 178.68114 * 19 18 17 35 35 H 1.08998 * 109.58630 * 6.60763 * 20 15 12 36 36 H 1.09005 * 109.58544 * 246.18204 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1273 2.0690 -1.1791 5 1 1.9523 3.1344 -1.2009 6 6 2.4626 1.3966 -2.3463 7 7 3.1187 0.2572 -2.2842 8 14 1.9830 2.1089 -4.0052 9 1 2.6079 3.4460 -4.1691 10 1 2.4546 1.2067 -5.0863 11 1 0.5057 2.2407 -4.0789 12 16 2.4386 2.1107 1.4260 13 8 3.3488 3.1497 1.0922 14 8 2.7529 1.0645 2.3347 15 7 1.0803 2.8510 2.0170 16 6 0.7677 4.2404 1.6555 17 6 0.5578 5.0486 2.9399 18 6 -0.5102 4.3668 3.7982 19 6 -0.0382 2.9627 4.1827 20 6 0.1648 2.1309 2.9125 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 1.8932 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.3533 -0.2124 -3.0998 27 1 -0.1417 4.2660 1.0550 28 1 1.5953 4.6652 1.0875 29 1 0.2313 6.0570 2.6859 30 1 1.4942 5.0980 3.4957 31 1 -0.6790 4.9532 4.7013 32 1 -1.4393 4.2955 3.2328 33 1 0.9037 3.0319 4.7269 34 1 -0.7890 2.4866 4.8133 35 1 0.5946 1.1639 3.1738 36 1 -0.7937 1.9845 2.4145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044411945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:19 Heat of formation + Delta-G solvation = -100.716588 kcal Electronic energy + Delta-G solvation = -19656.987902 eV Core-core repulsion = 16687.869299 eV Total energy + Delta-G solvation = -2969.118603 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.22827 -38.12614 -37.67005 -36.61797 -33.56268 -33.21721 -31.95270 -30.91775 -26.49611 -25.31161 -24.14621 -23.36211 -21.33506 -20.23175 -19.07275 -18.48613 -18.10457 -16.86172 -16.46667 -15.72141 -15.42970 -15.30745 -15.13341 -14.57408 -14.52572 -14.45679 -14.04694 -13.68605 -13.41551 -13.13675 -12.89731 -12.83959 -12.78016 -12.63423 -12.59880 -12.17983 -12.07406 -11.96960 -11.79818 -11.54409 -11.42996 -11.33185 -10.92797 -9.85595 -9.58817 -8.15406 -5.90752 -0.08540 1.49053 1.50117 1.58771 2.29217 2.50359 2.82976 3.09892 3.62186 3.80783 4.04176 4.05893 4.28141 4.36961 4.41243 4.48741 4.65153 4.71412 4.74340 4.85802 4.89873 4.98949 4.99322 5.08343 5.19138 5.25560 5.29099 5.40991 5.49796 5.51055 5.64002 5.81479 5.99857 6.52587 7.12039 7.48304 8.86303 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.008134 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.804075 B = 3441.324853 C = 3664.085229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.102 3.898 3 N -0.862 5.862 4 C -0.310 4.310 5 H 0.086 0.914 6 C -0.006 4.006 7 N -0.897 5.897 8 Si 0.975 3.025 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.261 1.261 12 S 2.752 3.248 13 O -1.028 7.028 14 O -1.037 7.037 15 N -1.000 6.000 16 C 0.116 3.884 17 C -0.130 4.130 18 C -0.110 4.110 19 C -0.130 4.130 20 C 0.113 3.887 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.267 0.733 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 5.258 7.891 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 N -0.696 5.696 4 C -0.444 4.444 5 H 0.104 0.896 6 C -0.209 4.209 7 N -0.537 5.537 8 Si 0.799 3.201 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.186 1.186 12 S 2.769 3.231 13 O -1.011 7.011 14 O -1.020 7.020 15 N -0.842 5.842 16 C -0.009 4.009 17 C -0.169 4.169 18 C -0.148 4.148 19 C -0.169 4.169 20 C -0.012 4.012 21 H 0.090 0.910 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.599 5.131 8.283 14.397 hybrid contribution 0.184 -0.014 -1.076 1.092 sum -10.415 5.117 7.207 13.660 Atomic orbital electron populations 1.22056 0.95418 1.01680 1.01613 1.21356 0.94423 0.83726 1.03001 1.53046 1.76780 1.21132 1.18668 1.19119 1.46222 0.93739 0.85277 0.89621 1.26088 0.94917 0.97213 1.02720 1.70085 1.35481 1.18564 1.29608 0.85283 0.79290 0.78031 0.77506 1.19766 1.20970 1.18617 1.02989 0.73907 0.72635 0.73589 1.93399 1.62714 1.60119 1.84917 1.93391 1.83907 1.58193 1.66551 1.57954 1.42780 1.22308 1.61121 1.21516 1.01695 0.79735 0.97979 1.21904 0.99739 0.99629 0.95640 1.21464 0.98137 0.95034 1.00136 1.21904 1.01916 0.96874 0.96248 1.21601 0.93868 0.95054 0.90696 0.91033 0.92561 0.93230 0.89230 0.93228 0.92337 0.90057 0.91541 0.88657 0.93196 0.90030 0.90476 0.93160 0.88344 0.90885 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 10.20 71.98 0.73 -4.67 16 2 C 0.10 4.74 6.01 86.38 0.52 5.26 16 3 N -0.86 -43.29 2.91 -343.45 -1.00 -44.29 16 4 C -0.31 -16.48 8.87 84.04 0.75 -15.74 16 5 H 0.09 4.46 7.94 -2.91 -0.02 4.43 16 6 C -0.01 -0.32 4.99 84.86 0.42 0.10 16 7 N -0.90 -50.08 11.27 21.65 0.24 -49.84 16 8 Si 0.97 41.46 29.62 68.60 2.03 43.49 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 12 S 2.75 131.56 6.11 -56.49 -0.34 131.22 16 13 O -1.03 -55.92 15.94 -128.00 -2.04 -57.96 16 14 O -1.04 -52.71 15.27 -128.00 -1.95 -54.67 16 15 N -1.00 -35.69 3.35 -513.07 -1.72 -37.41 16 16 C 0.12 3.55 6.48 86.36 0.56 4.11 16 17 C -0.13 -3.04 6.08 30.67 0.19 -2.85 16 18 C -0.11 -2.08 5.88 30.62 0.18 -1.90 16 19 C -0.13 -2.89 6.08 30.67 0.19 -2.70 16 20 C 0.11 3.20 5.62 86.36 0.49 3.69 16 21 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.06 1.80 6.58 -2.38 -0.02 1.79 16 23 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.09 4.64 5.31 -2.39 -0.01 4.63 16 25 H 0.05 2.30 6.90 -2.39 -0.02 2.28 16 26 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.07 2.36 6.92 -2.39 -0.02 2.34 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 2.29 6.92 -2.39 -0.02 2.28 16 36 H 0.08 2.02 7.52 -2.38 -0.02 2.00 16 Total: -1.00 -68.63 295.64 0.30 -68.33 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 1.06 Total: 15.82 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 4.02 Total: -14.70 kcal Atomic # 7 Polarization: -129.06 SS G_CDS: -2.47 Total: -131.54 kcal Atomic # 8 Polarization: -108.63 SS G_CDS: -4.00 Total: -112.63 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 131.56 SS G_CDS: -0.34 Total: 131.22 kcal Total: -68.63 0.30 -68.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044411945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.384 kcal (2) G-P(sol) polarization free energy of solvation -68.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds