Wall clock time and date at job start Mon Mar 30 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47515 * 2 1 4 4 C 1.48542 * 110.99968 * 52.60297 * 3 2 1 5 5 C 1.54931 * 103.22694 * 159.72119 * 4 3 2 6 6 C 1.54599 * 102.92476 * 322.58603 * 5 4 3 7 7 H 1.08997 * 110.30774 * 263.03983 * 6 5 4 8 8 C 1.53000 * 110.30548 * 140.87184 * 6 5 4 9 9 N 1.46497 * 109.47089 * 69.29067 * 8 6 5 10 10 S 1.65602 * 120.00044 * 164.99876 * 9 8 6 11 11 O 1.42108 * 106.40218 * 178.53732 * 10 9 8 12 12 O 1.42099 * 106.39996 * 311.45368 * 10 9 8 13 13 C 1.76195 * 107.22197 * 64.99649 * 10 9 8 14 14 H 1.08006 * 119.99501 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00333 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99783 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00084 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47213 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47148 * 120.00175 * 17 15 13 20 20 H 1.48505 * 109.47125 * 240.00247 * 17 15 13 21 21 C 1.47903 * 111.00089 * 169.99840 * 3 2 1 22 22 H 1.09002 * 109.47153 * 59.99762 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99953 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00238 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99867 * 2 1 3 27 27 H 1.08999 * 110.66829 * 278.16218 * 4 3 2 28 28 H 1.09005 * 110.66356 * 41.28669 * 4 3 2 29 29 H 1.08997 * 110.72506 * 204.22832 * 5 4 3 30 30 H 1.09001 * 110.72265 * 80.94824 * 5 4 3 31 31 H 1.09007 * 109.46911 * 189.28392 * 8 6 5 32 32 H 1.09000 * 109.47667 * 309.28696 * 8 6 5 33 33 H 0.97004 * 120.00189 * 344.99139 * 9 8 6 34 34 H 0.97002 * 120.00341 * 179.97438 * 16 15 13 35 35 H 1.08994 * 109.91868 * 333.51091 * 21 3 2 36 36 H 1.09000 * 109.91476 * 94.61275 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4031 2.1676 1.1017 5 6 2.3782 3.3584 1.2793 6 6 3.7624 2.7089 1.0513 7 1 4.2236 2.4561 2.0060 8 6 4.6672 3.6527 0.2565 9 7 5.0225 4.8047 1.0889 10 16 6.2723 5.7950 0.6420 11 8 6.3408 6.8218 1.6221 12 8 7.3667 4.9441 0.3301 13 6 5.8046 6.5771 -0.8660 14 1 4.8454 6.3595 -1.3122 15 6 6.6630 7.4669 -1.4763 16 7 7.8311 7.7314 -0.9331 17 14 6.1673 8.2955 -3.0754 18 1 4.8153 7.8299 -3.4759 19 1 6.1480 9.7680 -2.8847 20 1 7.1450 7.9467 -4.1374 21 6 3.4784 1.4313 0.2398 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 0.4126 2.5207 0.8152 28 1 1.3517 1.5730 2.0139 29 1 2.3060 3.7691 2.2864 30 1 2.1859 4.1290 0.5328 31 1 5.5739 3.1241 -0.0384 32 1 4.1411 3.9963 -0.6341 33 1 4.5257 4.9874 1.9017 34 1 8.4352 8.3571 -1.3627 35 1 3.7895 0.5542 0.8072 36 1 4.0101 1.4660 -0.7111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509783.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:23 Heat of formation + Delta-G solvation = -98.574248 kcal Electronic energy + Delta-G solvation = -18273.210516 eV Core-core repulsion = 15304.184812 eV Total energy + Delta-G solvation = -2969.025704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.31144 -35.43390 -35.03075 -33.89589 -33.06635 -32.46035 -29.37525 -28.79844 -26.08655 -24.11859 -23.25814 -20.66497 -20.12578 -18.85910 -17.31532 -16.30648 -16.17053 -15.90571 -15.10149 -14.82247 -14.43124 -14.10628 -13.62731 -13.56034 -13.27040 -12.93967 -12.54538 -12.16783 -11.97183 -11.71653 -11.42859 -11.28409 -11.20281 -11.17475 -11.10273 -10.72941 -10.60563 -10.54322 -10.23983 -10.13925 -10.08960 -9.21964 -8.95343 -8.49265 -8.41468 -6.66160 -5.27299 2.40605 3.08621 3.17018 3.24777 3.90575 4.10184 4.52391 4.65593 4.68668 4.84910 4.95549 4.98637 5.09193 5.21814 5.30107 5.42494 5.56357 5.60423 5.64157 5.77689 5.83563 5.86313 5.91041 5.95410 6.04779 6.19714 6.24319 6.39508 6.58396 6.83793 6.90553 6.96950 7.36599 7.96119 8.03993 8.93673 10.27977 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028801 B = 0.005015 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.954639 B = 5581.829037 C = 6078.973101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 N -0.518 5.518 4 C 0.035 3.965 5 C -0.122 4.122 6 C -0.106 4.106 7 H 0.080 0.920 8 C 0.137 3.863 9 N -1.137 6.137 10 S 2.716 3.284 11 O -1.009 7.009 12 O -1.009 7.009 13 C -1.019 5.019 14 H 0.103 0.897 15 C 0.132 3.868 16 N -0.846 5.846 17 Si 0.920 3.080 18 H -0.262 1.262 19 H -0.272 1.272 20 H -0.271 1.271 21 C 0.041 3.959 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.032 0.968 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.400 0.600 34 H 0.290 0.710 35 H 0.045 0.955 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.828 -12.298 1.858 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.087 4.087 3 N -0.242 5.242 4 C -0.093 4.093 5 C -0.160 4.160 6 C -0.126 4.126 7 H 0.098 0.902 8 C 0.010 3.990 9 N -0.892 5.892 10 S 2.816 3.184 11 O -0.999 6.999 12 O -0.999 6.999 13 C -1.153 5.153 14 H 0.121 0.879 15 C -0.085 4.085 16 N -0.476 5.476 17 Si 0.744 3.256 18 H -0.186 1.186 19 H -0.197 1.197 20 H -0.196 1.196 21 C -0.088 4.088 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.864 -11.967 1.668 16.934 hybrid contribution -0.646 0.209 -0.184 0.703 sum -12.510 -11.758 1.485 17.233 Atomic orbital electron populations 1.21847 0.94997 1.01602 1.02538 1.22261 0.95920 0.89751 1.00771 1.64840 1.04592 1.11462 1.43338 1.23239 0.98882 0.94737 0.92419 1.22627 0.93377 0.97624 1.02383 1.22250 0.96281 0.94816 0.99263 0.90159 1.21121 0.98459 0.86410 0.92984 1.55945 1.55738 1.42020 1.35503 1.00336 0.71039 0.71814 0.75222 1.93371 1.85943 1.57290 1.63311 1.93351 1.51502 1.68739 1.86262 1.30594 1.13241 1.40231 1.31215 0.87913 1.24744 0.92667 0.92912 0.98187 1.69907 1.07579 1.31072 1.39064 0.86143 0.79668 0.79012 0.80796 1.18596 1.19673 1.19646 1.22913 0.88818 0.96608 1.00441 0.91763 0.92631 0.92416 0.94953 0.90661 0.90110 0.94043 0.90976 0.89837 0.90795 0.91757 0.76920 0.90005 0.93634 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.57 37.16 0.36 -0.87 16 2 C 0.04 0.39 5.75 -3.83 -0.02 0.37 16 3 N -0.52 -5.94 5.40 -230.45 -1.24 -7.18 16 4 C 0.03 0.37 5.10 -1.90 -0.01 0.36 16 5 C -0.12 -1.44 6.23 -24.87 -0.16 -1.60 16 6 C -0.11 -1.38 3.09 -89.26 -0.28 -1.65 16 7 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 8 C 0.14 2.31 5.32 -4.04 -0.02 2.29 16 9 N -1.14 -22.21 5.92 -10.61 -0.06 -22.27 16 10 S 2.72 71.94 5.02 -107.50 -0.54 71.40 16 11 O -1.01 -29.64 18.02 -57.17 -1.03 -30.67 16 12 O -1.01 -29.51 17.49 -57.17 -1.00 -30.51 16 13 C -1.02 -28.16 9.72 30.60 0.30 -27.86 16 14 H 0.10 2.61 7.81 -52.48 -0.41 2.20 16 15 C 0.13 3.73 5.46 -17.82 -0.10 3.63 16 16 N -0.85 -25.10 13.19 55.43 0.73 -24.37 16 17 Si 0.92 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 C 0.04 0.48 6.35 -2.75 -0.02 0.47 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.44 6.79 -51.93 -0.35 0.08 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.29 7.81 -51.93 -0.41 -0.11 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.80 7.66 -51.93 -0.40 0.40 16 28 H 0.04 0.40 8.00 -51.93 -0.42 -0.01 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.08 7.76 -51.93 -0.40 0.68 16 31 H 0.07 1.30 7.75 -51.93 -0.40 0.90 16 32 H 0.06 1.08 7.99 -51.93 -0.42 0.66 16 33 H 0.40 6.76 8.39 -34.47 -0.29 6.47 16 34 H 0.29 7.69 8.31 -40.82 -0.34 7.36 16 35 H 0.05 0.49 7.57 -51.93 -0.39 0.10 16 36 H 0.09 1.06 7.69 -51.93 -0.40 0.66 16 LS Contribution 306.75 15.07 4.62 4.62 Total: -1.00 -34.75 306.75 -9.02 -43.77 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.53 Total: 4.33 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 0.05 Total: -24.87 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.58 Total: -53.82 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -2.03 Total: -61.18 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 71.94 SS G_CDS: -0.54 Total: 71.40 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.75 -9.02 -43.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509783.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.800 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds