Wall clock time and date at job start Mon Mar 30 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47515 * 2 1 4 4 C 1.48542 * 110.99968 * 52.60297 * 3 2 1 5 5 C 1.54931 * 103.22694 * 159.72119 * 4 3 2 6 6 C 1.54599 * 102.92476 * 322.58603 * 5 4 3 7 7 H 1.08997 * 110.30774 * 263.03983 * 6 5 4 8 8 C 1.53000 * 110.30548 * 140.87184 * 6 5 4 9 9 N 1.46497 * 109.47089 * 69.29067 * 8 6 5 10 10 S 1.65602 * 120.00044 * 164.99876 * 9 8 6 11 11 O 1.42108 * 106.40218 * 178.53732 * 10 9 8 12 12 O 1.42099 * 106.39996 * 311.45368 * 10 9 8 13 13 C 1.76195 * 107.22197 * 64.99649 * 10 9 8 14 14 H 1.08006 * 119.99501 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00333 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99783 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00084 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47213 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47148 * 120.00175 * 17 15 13 20 20 H 1.48505 * 109.47125 * 240.00247 * 17 15 13 21 21 C 1.47903 * 111.00089 * 169.99840 * 3 2 1 22 22 H 1.09002 * 109.47153 * 59.99762 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99953 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00238 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99867 * 2 1 3 27 27 H 1.08999 * 110.66829 * 278.16218 * 4 3 2 28 28 H 1.09005 * 110.66356 * 41.28669 * 4 3 2 29 29 H 1.08997 * 110.72506 * 204.22832 * 5 4 3 30 30 H 1.09001 * 110.72265 * 80.94824 * 5 4 3 31 31 H 1.09007 * 109.46911 * 189.28392 * 8 6 5 32 32 H 1.09000 * 109.47667 * 309.28696 * 8 6 5 33 33 H 0.97004 * 120.00189 * 344.99139 * 9 8 6 34 34 H 0.97002 * 120.00341 * 179.97438 * 16 15 13 35 35 H 1.08994 * 109.91868 * 333.51091 * 21 3 2 36 36 H 1.09000 * 109.91476 * 94.61275 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4031 2.1676 1.1017 5 6 2.3782 3.3584 1.2793 6 6 3.7624 2.7089 1.0513 7 1 4.2236 2.4561 2.0060 8 6 4.6672 3.6527 0.2565 9 7 5.0225 4.8047 1.0889 10 16 6.2723 5.7950 0.6420 11 8 6.3408 6.8218 1.6221 12 8 7.3667 4.9441 0.3301 13 6 5.8046 6.5771 -0.8660 14 1 4.8454 6.3595 -1.3122 15 6 6.6630 7.4669 -1.4763 16 7 7.8311 7.7314 -0.9331 17 14 6.1673 8.2955 -3.0754 18 1 4.8153 7.8299 -3.4759 19 1 6.1480 9.7680 -2.8847 20 1 7.1450 7.9467 -4.1374 21 6 3.4784 1.4313 0.2398 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 0.4126 2.5207 0.8152 28 1 1.3517 1.5730 2.0139 29 1 2.3060 3.7691 2.2864 30 1 2.1859 4.1290 0.5328 31 1 5.5739 3.1241 -0.0384 32 1 4.1411 3.9963 -0.6341 33 1 4.5257 4.9874 1.9017 34 1 8.4352 8.3571 -1.3627 35 1 3.7895 0.5542 0.8072 36 1 4.0101 1.4660 -0.7111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509783.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:23 Heat of formation + Delta-G solvation = -127.478198 kcal Electronic energy + Delta-G solvation = -18274.463885 eV Core-core repulsion = 15304.184812 eV Total energy + Delta-G solvation = -2970.279073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24401 -37.40343 -36.54465 -36.12012 -35.16462 -33.57809 -30.26725 -29.79962 -28.24297 -25.37904 -24.05267 -21.51683 -21.30003 -20.78466 -19.27914 -18.17367 -17.52032 -17.03538 -16.74322 -16.14887 -15.90340 -15.57324 -15.15518 -14.91659 -14.44822 -13.98744 -13.90637 -13.48401 -13.25620 -13.20584 -13.01564 -12.71611 -12.49952 -12.42704 -12.31296 -12.27460 -12.23627 -11.96641 -11.84101 -11.60342 -11.48734 -11.25179 -10.97162 -10.15250 -9.31445 -8.74233 -7.46599 0.38683 1.34243 1.35520 1.53132 2.22300 2.59294 3.00404 3.10224 3.63480 3.69224 3.79014 3.89099 4.24835 4.31171 4.39372 4.43278 4.49357 4.60671 4.62611 4.67139 4.75528 4.88026 4.95478 4.99121 5.08651 5.09784 5.17695 5.24675 5.31534 5.34997 5.39472 5.92043 5.98295 6.17462 6.43387 6.80275 8.22463 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028801 B = 0.005015 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.954639 B = 5581.829037 C = 6078.973101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.039 3.961 3 N -0.533 5.533 4 C 0.040 3.960 5 C -0.124 4.124 6 C -0.099 4.099 7 H 0.088 0.912 8 C 0.131 3.869 9 N -1.119 6.119 10 S 2.722 3.278 11 O -1.045 7.045 12 O -1.045 7.045 13 C -1.040 5.040 14 H 0.119 0.881 15 C 0.070 3.930 16 N -0.895 5.895 17 Si 0.990 3.010 18 H -0.248 1.248 19 H -0.260 1.260 20 H -0.259 1.259 21 C 0.042 3.958 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.415 0.585 34 H 0.298 0.702 35 H 0.059 0.941 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.806 -12.981 1.198 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 N -0.258 5.258 4 C -0.087 4.087 5 C -0.162 4.162 6 C -0.120 4.120 7 H 0.107 0.893 8 C 0.005 3.995 9 N -0.879 5.879 10 S 2.823 3.177 11 O -1.036 7.036 12 O -1.034 7.034 13 C -1.173 5.173 14 H 0.137 0.863 15 C -0.143 4.143 16 N -0.526 5.526 17 Si 0.809 3.191 18 H -0.171 1.171 19 H -0.184 1.184 20 H -0.184 1.184 21 C -0.086 4.086 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.249 0.751 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.850 -12.664 1.035 18.796 hybrid contribution -0.063 0.343 0.064 0.355 sum -13.913 -12.321 1.100 18.617 Atomic orbital electron populations 1.21817 0.93896 1.02537 1.02301 1.22330 0.96826 0.88665 1.01076 1.64839 1.04165 1.12855 1.43978 1.23228 0.98694 0.94078 0.92714 1.22647 0.92840 0.97903 1.02776 1.22193 0.96150 0.94543 0.99116 0.89319 1.21344 0.98829 0.85940 0.93377 1.55294 1.54385 1.41859 1.36345 0.99782 0.71591 0.71557 0.74774 1.93310 1.86957 1.59071 1.64234 1.93299 1.54080 1.69413 1.86646 1.30941 1.14069 1.40489 1.31819 0.86258 1.26008 0.92404 0.93515 1.02383 1.69994 1.09086 1.32291 1.41250 0.85098 0.80090 0.78251 0.75698 1.17093 1.18386 1.18350 1.22860 0.89464 0.96293 1.00027 0.92484 0.92326 0.90953 0.94350 0.90646 0.89323 0.92819 0.89638 0.91125 0.92003 0.91723 0.75135 0.89141 0.92307 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.57 71.98 0.69 -1.33 16 2 C 0.04 0.65 5.75 86.30 0.50 1.14 16 3 N -0.53 -11.15 5.40 -883.02 -4.76 -15.92 16 4 C 0.04 0.75 5.10 86.65 0.44 1.19 16 5 C -0.12 -2.68 6.23 31.80 0.20 -2.48 16 6 C -0.10 -2.44 3.09 -9.91 -0.03 -2.47 16 7 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 8 C 0.13 4.36 5.32 86.38 0.46 4.82 16 9 N -1.12 -43.46 5.92 -187.49 -1.11 -44.57 16 10 S 2.72 146.64 5.02 -56.49 -0.28 146.36 16 11 O -1.05 -62.78 18.02 -128.00 -2.31 -65.08 16 12 O -1.04 -62.71 17.49 -128.00 -2.24 -64.95 16 13 C -1.04 -57.50 9.72 67.73 0.66 -56.84 16 14 H 0.12 5.97 7.81 -2.91 -0.02 5.94 16 15 C 0.07 3.90 5.46 84.65 0.46 4.36 16 16 N -0.89 -53.81 13.19 21.45 0.28 -53.53 16 17 Si 0.99 41.64 29.54 68.60 2.03 43.67 16 18 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 19 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 C 0.04 0.94 6.35 86.45 0.55 1.48 16 22 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.06 0.76 6.79 -2.39 -0.02 0.75 16 24 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.04 0.60 7.81 -2.39 -0.02 0.58 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.52 7.66 -2.39 -0.02 1.50 16 28 H 0.05 0.88 8.00 -2.38 -0.02 0.86 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.72 7.76 -2.39 -0.02 1.70 16 31 H 0.06 2.20 7.75 -2.38 -0.02 2.18 16 32 H 0.06 2.14 7.99 -2.39 -0.02 2.12 16 33 H 0.41 13.71 8.39 -96.74 -0.81 12.90 16 34 H 0.30 16.06 8.31 -92.71 -0.77 15.29 16 35 H 0.06 1.15 7.57 -2.39 -0.02 1.13 16 36 H 0.08 1.85 7.69 -2.39 -0.02 1.83 16 Total: -1.00 -74.98 306.75 -4.22 -79.19 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.25 Total: 24.96 kcal Atomic # 6 Polarization: -54.05 SS G_CDS: 3.92 Total: -50.13 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -5.59 Total: -114.02 kcal Atomic # 8 Polarization: -125.49 SS G_CDS: -4.54 Total: -130.04 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 146.64 SS G_CDS: -0.28 Total: 146.36 kcal Total: -74.98 -4.22 -79.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509783.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.285 kcal (2) G-P(sol) polarization free energy of solvation -74.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds