Wall clock time and date at job start Mon Mar 30 2020 05:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47060 * 2 1 4 4 C 1.47446 * 111.00255 * 69.87065 * 3 2 1 5 5 C 1.54316 * 107.23320 * 123.25926 * 4 3 2 6 6 C 1.55139 * 103.01810 * 22.28197 * 5 4 3 7 7 H 1.09002 * 110.99125 * 82.47994 * 6 5 4 8 8 C 1.52999 * 110.99115 * 206.25441 * 6 5 4 9 9 N 1.46507 * 109.47372 * 293.54924 * 8 6 5 10 10 S 1.65600 * 120.00250 * 164.99860 * 9 8 6 11 11 O 1.42092 * 106.40055 * 178.54203 * 10 9 8 12 12 O 1.42096 * 106.39815 * 311.46207 * 10 9 8 13 13 C 1.76198 * 107.21818 * 65.00110 * 10 9 8 14 14 H 1.08001 * 119.99930 * 359.97438 * 13 10 9 15 15 C 1.37874 * 119.99831 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00368 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99666 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47668 * 89.99877 * 17 15 13 19 19 H 1.48510 * 109.46819 * 209.99643 * 17 15 13 20 20 H 1.48505 * 109.47268 * 329.99315 * 17 15 13 21 21 C 1.47843 * 110.99888 * 190.71516 * 3 2 1 22 22 H 1.09001 * 109.47264 * 300.00227 * 1 2 3 23 23 H 1.08999 * 109.46924 * 60.00740 * 1 2 3 24 24 H 1.08999 * 109.46987 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47338 * 239.99746 * 2 1 3 26 26 H 1.08999 * 109.46924 * 119.99260 * 2 1 3 27 27 H 1.08997 * 109.88511 * 242.66682 * 4 3 2 28 28 H 1.08994 * 109.88544 * 3.85008 * 4 3 2 29 29 H 1.08999 * 110.70589 * 140.66668 * 5 4 3 30 30 H 1.09003 * 110.70251 * 263.90046 * 5 4 3 31 31 H 1.08998 * 109.47068 * 53.54717 * 8 6 5 32 32 H 1.09001 * 109.47175 * 173.54962 * 8 6 5 33 33 H 0.97003 * 119.99537 * 344.99966 * 9 8 6 34 34 H 0.96997 * 120.00096 * 179.97438 * 16 15 13 35 35 H 1.08998 * 110.37465 * 332.46027 * 21 3 2 36 36 H 1.09003 * 110.37404 * 94.80784 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7492 2.0411 1.2924 5 6 3.1019 2.5371 1.8453 6 6 3.9837 2.6377 0.5729 7 1 3.8064 3.5764 0.0481 8 6 5.4655 2.4782 0.9190 9 7 5.9036 3.6187 1.7277 10 16 7.3358 3.5450 2.5558 11 8 7.4894 4.8001 3.2040 12 8 7.3336 2.3061 3.2516 13 6 8.6253 3.4416 1.3596 14 1 8.3858 3.4361 0.3065 15 6 9.9400 3.3668 1.7680 16 7 10.2317 3.3731 3.0503 17 14 11.3072 3.2579 0.4997 18 1 11.7570 4.6260 0.1379 19 1 12.4485 2.4953 1.0665 20 1 10.8030 2.5656 -0.7135 21 6 3.4749 1.4324 -0.2566 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.0764 2.8860 1.1457 28 1 1.3050 1.3265 1.9852 29 1 2.9911 3.5141 2.3156 30 1 3.5192 1.8152 2.5474 31 1 5.6099 1.5565 1.4825 32 1 6.0509 2.4380 0.0004 33 1 5.3547 4.4169 1.7779 34 1 11.1566 3.3200 3.3376 35 1 3.9501 0.5115 0.0813 36 1 3.6682 1.5932 -1.3173 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:26 Heat of formation + Delta-G solvation = -128.598859 kcal Electronic energy + Delta-G solvation = -18252.941395 eV Core-core repulsion = 15282.613727 eV Total energy + Delta-G solvation = -2970.327669 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24104 -37.42079 -36.51464 -36.13607 -35.17380 -33.58422 -30.25582 -29.87288 -28.25548 -25.49031 -23.91506 -21.74555 -21.07949 -20.86200 -19.32100 -18.17883 -17.50123 -17.11642 -16.70416 -16.28044 -15.94788 -15.40239 -15.13920 -14.73003 -14.55293 -14.15561 -13.98599 -13.71716 -13.31581 -13.00984 -12.91203 -12.77666 -12.51741 -12.50796 -12.42356 -12.29531 -12.16147 -11.97413 -11.76826 -11.69747 -11.54615 -11.24645 -10.99748 -10.15511 -9.27756 -8.75135 -7.48291 0.36873 1.35115 1.35485 1.51604 2.21454 2.58553 2.97514 3.02624 3.63465 3.69625 3.77828 3.88325 4.22651 4.33928 4.34859 4.41733 4.50253 4.54772 4.65096 4.66377 4.74312 4.82456 4.94361 4.98534 5.01190 5.09690 5.18055 5.21236 5.30977 5.37786 5.41120 5.90343 6.00396 6.16370 6.41872 6.78813 8.21303 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036162 B = 0.004728 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.097409 B = 5920.722368 C = 6351.728200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.040 3.960 3 N -0.536 5.536 4 C 0.046 3.954 5 C -0.143 4.143 6 C -0.095 4.095 7 H 0.102 0.898 8 C 0.130 3.870 9 N -1.119 6.119 10 S 2.722 3.278 11 O -1.046 7.046 12 O -1.045 7.045 13 C -1.042 5.042 14 H 0.122 0.878 15 C 0.069 3.931 16 N -0.895 5.895 17 Si 0.991 3.009 18 H -0.255 1.255 19 H -0.264 1.264 20 H -0.246 1.246 21 C 0.049 3.951 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.030 0.970 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.415 0.585 34 H 0.299 0.701 35 H 0.048 0.952 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.027 -4.763 -9.158 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 N -0.260 5.260 4 C -0.082 4.082 5 C -0.182 4.182 6 C -0.116 4.116 7 H 0.120 0.880 8 C 0.004 3.996 9 N -0.878 5.878 10 S 2.823 3.177 11 O -1.036 7.036 12 O -1.035 7.035 13 C -1.175 5.175 14 H 0.140 0.860 15 C -0.144 4.144 16 N -0.527 5.527 17 Si 0.809 3.191 18 H -0.180 1.180 19 H -0.188 1.188 20 H -0.169 1.169 21 C -0.080 4.080 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.249 0.751 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.033 -4.696 -8.442 17.869 hybrid contribution 1.245 -0.120 0.111 1.255 sum -13.788 -4.816 -8.332 16.814 Atomic orbital electron populations 1.21735 0.93770 1.02156 1.02248 1.22349 0.97100 0.88489 1.00888 1.63706 1.14069 1.16989 1.31286 1.22848 0.96597 0.99325 0.89419 1.22889 0.95619 1.02310 0.97334 1.22461 0.91931 1.00579 0.96582 0.87958 1.21211 0.95760 0.87771 0.94883 1.55276 1.39869 1.25296 1.67386 0.99781 0.72579 0.71402 0.73954 1.93308 1.86867 1.46618 1.76841 1.93298 1.87633 1.47934 1.74626 1.30937 1.08746 1.66415 1.11428 0.85978 1.26037 1.02466 0.87608 0.98304 1.69992 1.23856 1.41497 1.17332 0.85117 0.75881 0.79951 0.78146 1.17957 1.18806 1.16867 1.23042 0.87263 0.96689 1.00976 0.92948 0.92076 0.91170 0.90274 0.95186 0.89705 0.92224 0.90069 0.92634 0.92419 0.90887 0.75072 0.89135 0.93335 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.94 71.98 0.72 -1.34 16 2 C 0.04 0.70 5.26 86.30 0.45 1.16 16 3 N -0.54 -11.02 5.16 -885.56 -4.57 -15.59 16 4 C 0.05 0.92 6.21 86.64 0.54 1.46 16 5 C -0.14 -3.44 6.24 31.77 0.20 -3.24 16 6 C -0.10 -2.31 3.10 -9.41 -0.03 -2.34 16 7 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 8 C 0.13 4.19 5.67 86.38 0.49 4.68 16 9 N -1.12 -42.85 5.82 -187.48 -1.09 -43.94 16 10 S 2.72 145.57 5.02 -56.49 -0.28 145.29 16 11 O -1.05 -62.67 18.02 -128.00 -2.31 -64.98 16 12 O -1.05 -62.42 17.49 -128.00 -2.24 -64.65 16 13 C -1.04 -56.91 9.72 67.73 0.66 -56.25 16 14 H 0.12 5.94 7.81 -2.91 -0.02 5.91 16 15 C 0.07 3.80 5.46 84.65 0.46 4.27 16 16 N -0.90 -53.62 13.19 21.45 0.28 -53.34 16 17 Si 0.99 41.00 29.54 68.60 2.03 43.03 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 19 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 20 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 21 C 0.05 1.05 6.15 86.77 0.53 1.58 16 22 H 0.05 0.77 7.14 -2.39 -0.02 0.76 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 1.29 8.07 -2.39 -0.02 1.27 16 26 H 0.03 0.56 7.96 -2.39 -0.02 0.55 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.14 6.91 -2.39 -0.02 1.12 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.53 8.01 -2.39 -0.02 1.51 16 31 H 0.06 2.04 7.72 -2.39 -0.02 2.02 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.42 13.60 8.65 -96.74 -0.84 12.76 16 34 H 0.30 16.04 8.31 -92.71 -0.77 15.27 16 35 H 0.05 1.08 7.70 -2.39 -0.02 1.06 16 36 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -74.36 308.59 -3.93 -78.29 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.23 Total: 25.93 kcal Atomic # 6 Polarization: -54.06 SS G_CDS: 4.02 Total: -50.03 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -5.38 Total: -112.87 kcal Atomic # 8 Polarization: -125.09 SS G_CDS: -4.54 Total: -129.63 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 16 Polarization: 145.57 SS G_CDS: -0.28 Total: 145.29 kcal Total: -74.36 -3.93 -78.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.310 kcal (2) G-P(sol) polarization free energy of solvation -74.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds