Wall clock time and date at job start Mon Mar 30 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21303 * 119.99249 * 2 1 4 4 C 1.46824 * 120.00245 * 179.97438 * 2 1 3 5 5 C 1.40069 * 120.09881 * 180.02562 * 4 2 1 6 6 C 1.36589 * 119.89961 * 180.27916 * 5 4 2 7 7 C 1.39243 * 120.09892 * 359.49438 * 6 5 4 8 8 N 1.39258 * 119.90013 * 180.23604 * 7 6 5 9 9 C 1.34778 * 119.99920 * 213.16693 * 8 7 6 10 10 O 1.21576 * 119.99557 * 5.29738 * 9 8 7 11 11 N 1.34778 * 119.99911 * 185.29102 * 9 8 7 12 12 C 1.46503 * 119.99852 * 0.02562 * 11 9 8 13 13 C 1.37155 * 119.99789 * 180.02562 * 11 9 8 14 14 H 1.07996 * 119.99745 * 23.49789 * 13 11 9 15 15 C 1.38888 * 119.99957 * 203.49511 * 13 11 9 16 16 N 1.31469 * 119.99839 * 15.17391 * 15 13 11 17 17 Si 1.86793 * 120.00124 * 195.17206 * 15 13 11 18 18 H 1.48494 * 109.47219 * 59.99922 * 17 15 13 19 19 H 1.48501 * 109.47669 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47001 * 300.00035 * 17 15 13 21 21 C 1.39234 * 120.19901 * 0.50245 * 7 6 5 22 22 C 1.36592 * 120.09990 * 359.75620 * 21 7 6 23 23 H 1.08996 * 109.47406 * 269.99754 * 1 2 3 24 24 H 1.08997 * 109.47404 * 30.00034 * 1 2 3 25 25 H 1.09005 * 109.46907 * 150.00096 * 1 2 3 26 26 H 1.08003 * 120.04999 * 359.97438 * 5 4 2 27 27 H 1.08000 * 119.95434 * 179.74430 * 6 5 4 28 28 H 0.96997 * 119.99954 * 33.17016 * 8 7 6 29 29 H 1.08995 * 109.47421 * 84.82117 * 12 11 9 30 30 H 1.08998 * 109.46609 * 204.82161 * 12 11 9 31 31 H 1.08997 * 109.47047 * 324.81697 * 12 11 9 32 32 H 0.97005 * 119.99817 * 180.02562 * 16 15 13 33 33 H 1.08000 * 119.94870 * 179.73002 * 21 7 6 34 34 H 1.08004 * 120.05445 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2412 -1.2715 0.0006 5 6 3.6419 -1.2739 0.0011 6 6 4.3208 -2.4591 -0.0041 7 6 3.6225 -3.6638 0.0006 8 7 4.3189 -4.8698 0.0002 9 6 3.8074 -5.9431 -0.6345 10 8 2.7874 -5.8343 -1.2871 11 7 4.4267 -7.1368 -0.5459 12 6 5.6556 -7.2678 0.2408 13 6 3.9064 -8.2289 -1.1923 14 1 3.2610 -8.0934 -2.0474 15 6 4.2098 -9.5091 -0.7471 16 7 4.7359 -9.6829 0.4451 17 14 3.8702 -10.9837 -1.8422 18 1 4.6410 -10.8509 -3.1044 19 1 4.2796 -12.2266 -1.1401 20 1 2.4193 -11.0462 -2.1524 21 6 2.2302 -3.6663 0.0002 22 6 1.5430 -2.4858 0.0001 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 4.1843 -0.3399 0.0007 27 1 5.4007 -2.4619 -0.0079 28 1 5.1720 -4.9373 0.4568 29 1 5.4010 -7.4367 1.2871 30 1 6.2375 -8.1107 -0.1321 31 1 6.2426 -6.3537 0.1527 32 1 4.9481 -10.5770 0.7559 33 1 1.6927 -4.6031 -0.0005 34 1 0.4630 -2.4886 -0.0007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049539.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:03 Heat of formation + Delta-G solvation = -22.075882 kcal Electronic energy + Delta-G solvation = -18906.183772 eV Core-core repulsion = 15805.031334 eV Total energy + Delta-G solvation = -3101.152437 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.24586 -39.28368 -37.75568 -35.09062 -34.08364 -31.81469 -31.39404 -30.31170 -28.51550 -26.42654 -24.81281 -23.05311 -22.53868 -20.08978 -19.52419 -18.05112 -17.04050 -16.80499 -16.13850 -15.43429 -15.01612 -14.89027 -14.48946 -14.31231 -13.88535 -13.75519 -13.30347 -12.97196 -12.67591 -12.45048 -12.20955 -12.18146 -11.94052 -11.55525 -11.42473 -10.97291 -10.93227 -10.48036 -10.39384 -9.90548 -9.68638 -9.11463 -9.05828 -8.77048 -7.89997 -7.64026 -6.40679 -3.95502 0.83693 1.67293 2.53188 3.16345 3.20544 3.22289 3.52527 3.89925 4.17648 4.20580 4.26068 4.90899 5.02888 5.06033 5.14808 5.17991 5.32895 5.39842 5.51382 5.68253 5.80243 5.88079 6.04782 6.20214 6.49432 6.56134 6.58003 6.64916 6.85176 6.99371 7.34800 7.40725 7.51000 7.61994 8.21114 8.50064 9.06291 9.32516 9.87106 10.66158 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.046180 B = 0.004027 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.177220 B = 6950.937012 C = 7353.947122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.401 3.599 3 O -0.478 6.478 4 C -0.223 4.223 5 C -0.033 4.033 6 C -0.184 4.184 7 C 0.236 3.764 8 N -0.692 5.692 9 C 0.646 3.354 10 O -0.601 6.601 11 N -0.457 5.457 12 C 0.111 3.889 13 C -0.299 4.299 14 H 0.100 0.900 15 C 0.030 3.970 16 N -0.884 5.884 17 Si 0.930 3.070 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.143 4.143 22 C -0.047 4.047 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.402 0.598 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.020 0.980 32 H 0.268 0.732 33 H 0.147 0.853 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 11.064 2.250 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.282 3.718 3 O -0.356 6.356 4 C -0.225 4.225 5 C -0.052 4.052 6 C -0.206 4.206 7 C 0.135 3.865 8 N -0.339 5.339 9 C 0.350 3.650 10 O -0.482 6.482 11 N -0.178 5.178 12 C -0.033 4.033 13 C -0.427 4.427 14 H 0.117 0.883 15 C -0.173 4.173 16 N -0.523 5.523 17 Si 0.756 3.244 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.164 4.164 22 C -0.066 4.066 23 H 0.113 0.887 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.147 0.853 27 H 0.144 0.856 28 H 0.239 0.761 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.164 0.836 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.914 11.291 1.892 11.608 hybrid contribution 0.437 -1.075 -0.114 1.166 sum -1.477 10.217 1.778 10.475 Atomic orbital electron populations 1.22234 0.94395 1.04697 1.04511 1.22332 0.91409 0.87730 0.70341 1.90504 1.72242 1.34562 1.38276 1.20266 0.94473 0.94409 1.13387 1.20800 0.93046 0.97713 0.93662 1.20590 1.00029 0.91045 1.08909 1.17939 0.91692 0.84998 0.91864 1.43042 1.24883 1.09272 1.56684 1.16023 0.84229 0.80948 0.83846 1.90757 1.25813 1.83846 1.47780 1.42816 1.22180 1.05888 1.46960 1.21469 0.86597 0.98722 0.96546 1.19504 1.30284 0.82386 1.10547 0.88254 1.25308 0.97390 0.98870 0.95768 1.70016 1.43163 1.23334 1.15835 0.85944 0.79146 0.79696 0.79599 1.19915 1.20954 1.19745 1.21081 0.92944 0.99644 1.02729 1.21060 0.99779 0.91007 0.94776 0.88706 0.89833 0.89445 0.85265 0.85559 0.76127 0.92872 0.90008 0.96170 0.92165 0.83584 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.80 9.75 36.01 0.35 -1.45 16 2 C 0.40 5.19 7.21 -30.84 -0.22 4.97 16 3 O -0.48 -7.54 17.08 5.54 0.09 -7.45 16 4 C -0.22 -3.10 5.87 -105.05 -0.62 -3.72 16 5 C -0.03 -0.47 9.54 -39.49 -0.38 -0.84 16 6 C -0.18 -2.65 9.90 -39.80 -0.39 -3.04 16 7 C 0.24 4.04 6.29 -83.74 -0.53 3.51 16 8 N -0.69 -12.81 5.19 -14.21 -0.07 -12.88 16 9 C 0.65 15.21 7.96 -86.92 -0.69 14.52 16 10 O -0.60 -15.88 13.67 5.30 0.07 -15.81 16 11 N -0.46 -11.22 3.01 -127.62 -0.38 -11.60 16 12 C 0.11 2.31 8.41 59.85 0.50 2.81 16 13 C -0.30 -8.06 9.25 -14.93 -0.14 -8.19 16 14 H 0.10 2.79 7.44 -52.49 -0.39 2.40 16 15 C 0.03 0.76 4.98 -17.47 -0.09 0.67 16 16 N -0.88 -22.85 10.93 55.49 0.61 -22.24 16 17 Si 0.93 20.15 29.58 -169.99 -5.03 15.13 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 C -0.14 -2.47 8.58 -39.81 -0.34 -2.81 16 22 C -0.05 -0.66 9.31 -39.49 -0.37 -1.03 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.67 6.45 -51.93 -0.34 0.34 16 26 H 0.13 1.66 7.64 -52.48 -0.40 1.26 16 27 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.40 6.28 6.61 -40.82 -0.27 6.01 16 29 H 0.05 1.14 7.89 -51.93 -0.41 0.73 16 30 H 0.08 1.82 6.74 -51.93 -0.35 1.47 16 31 H 0.02 0.33 6.57 -51.93 -0.34 -0.01 16 32 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.15 2.88 6.36 -52.49 -0.33 2.54 16 34 H 0.13 1.41 6.34 -52.48 -0.33 1.07 16 LS Contribution 292.54 15.07 4.41 4.41 Total: -1.00 -31.17 292.54 -6.78 -37.95 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -3.57 Total: 7.08 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -2.91 Total: 5.42 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.15 Total: -46.72 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.17 Total: -23.26 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.17 -6.78 -37.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049539.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.871 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds