Wall clock time and date at job start Mon Mar 30 2020 05:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21303 * 119.99249 * 2 1 4 4 C 1.46824 * 120.00245 * 179.97438 * 2 1 3 5 5 C 1.40069 * 120.09881 * 180.02562 * 4 2 1 6 6 C 1.36589 * 119.89961 * 180.27916 * 5 4 2 7 7 C 1.39243 * 120.09892 * 359.49438 * 6 5 4 8 8 N 1.39258 * 119.90013 * 180.23604 * 7 6 5 9 9 C 1.34778 * 119.99920 * 213.16693 * 8 7 6 10 10 O 1.21576 * 119.99557 * 5.29738 * 9 8 7 11 11 N 1.34778 * 119.99911 * 185.29102 * 9 8 7 12 12 C 1.46503 * 119.99852 * 0.02562 * 11 9 8 13 13 C 1.37155 * 119.99789 * 180.02562 * 11 9 8 14 14 H 1.07996 * 119.99745 * 23.49789 * 13 11 9 15 15 C 1.38888 * 119.99957 * 203.49511 * 13 11 9 16 16 N 1.31469 * 119.99839 * 15.17391 * 15 13 11 17 17 Si 1.86793 * 120.00124 * 195.17206 * 15 13 11 18 18 H 1.48494 * 109.47219 * 59.99922 * 17 15 13 19 19 H 1.48501 * 109.47669 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47001 * 300.00035 * 17 15 13 21 21 C 1.39234 * 120.19901 * 0.50245 * 7 6 5 22 22 C 1.36592 * 120.09990 * 359.75620 * 21 7 6 23 23 H 1.08996 * 109.47406 * 269.99754 * 1 2 3 24 24 H 1.08997 * 109.47404 * 30.00034 * 1 2 3 25 25 H 1.09005 * 109.46907 * 150.00096 * 1 2 3 26 26 H 1.08003 * 120.04999 * 359.97438 * 5 4 2 27 27 H 1.08000 * 119.95434 * 179.74430 * 6 5 4 28 28 H 0.96997 * 119.99954 * 33.17016 * 8 7 6 29 29 H 1.08995 * 109.47421 * 84.82117 * 12 11 9 30 30 H 1.08998 * 109.46609 * 204.82161 * 12 11 9 31 31 H 1.08997 * 109.47047 * 324.81697 * 12 11 9 32 32 H 0.97005 * 119.99817 * 180.02562 * 16 15 13 33 33 H 1.08000 * 119.94870 * 179.73002 * 21 7 6 34 34 H 1.08004 * 120.05445 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2412 -1.2715 0.0006 5 6 3.6419 -1.2739 0.0011 6 6 4.3208 -2.4591 -0.0041 7 6 3.6225 -3.6638 0.0006 8 7 4.3189 -4.8698 0.0002 9 6 3.8074 -5.9431 -0.6345 10 8 2.7874 -5.8343 -1.2871 11 7 4.4267 -7.1368 -0.5459 12 6 5.6556 -7.2678 0.2408 13 6 3.9064 -8.2289 -1.1923 14 1 3.2610 -8.0934 -2.0474 15 6 4.2098 -9.5091 -0.7471 16 7 4.7359 -9.6829 0.4451 17 14 3.8702 -10.9837 -1.8422 18 1 4.6410 -10.8509 -3.1044 19 1 4.2796 -12.2266 -1.1401 20 1 2.4193 -11.0462 -2.1524 21 6 2.2302 -3.6663 0.0002 22 6 1.5430 -2.4858 0.0001 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 4.1843 -0.3399 0.0007 27 1 5.4007 -2.4619 -0.0079 28 1 5.1720 -4.9373 0.4568 29 1 5.4010 -7.4367 1.2871 30 1 6.2375 -8.1107 -0.1321 31 1 6.2426 -6.3537 0.1527 32 1 4.9481 -10.5770 0.7559 33 1 1.6927 -4.6031 -0.0005 34 1 0.4630 -2.4886 -0.0007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049539.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:02 Heat of formation + Delta-G solvation = -41.433430 kcal Electronic energy + Delta-G solvation = -18907.023178 eV Core-core repulsion = 15805.031334 eV Total energy + Delta-G solvation = -3101.991843 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.68088 -40.60976 -39.09651 -36.86676 -35.67986 -33.63468 -32.55528 -31.48468 -29.63174 -28.21708 -26.54930 -24.39453 -23.77061 -21.56774 -20.77534 -19.63102 -18.82632 -18.25462 -17.44452 -16.83567 -16.73540 -16.02513 -15.91419 -15.75996 -15.32121 -14.96671 -14.73754 -14.53437 -14.02301 -13.70644 -13.64049 -13.30554 -13.19946 -12.97411 -12.93486 -12.64811 -12.39045 -12.17114 -12.12606 -11.36886 -11.01228 -10.88720 -10.68299 -10.02208 -9.76596 -9.04709 -8.34431 -5.96842 -0.33013 0.49304 1.36899 1.43473 1.46754 1.53201 1.97040 2.27463 2.42936 2.89367 3.13115 3.22727 3.44480 3.85289 3.98587 4.21449 4.35201 4.42685 4.46813 4.56237 4.70528 4.73944 4.89884 5.04839 5.09904 5.22706 5.31617 5.36632 5.42763 5.45526 5.58729 5.80035 6.04298 6.28770 6.59960 6.72803 7.14823 7.48619 8.02374 8.70749 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.046180 B = 0.004027 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.177220 B = 6950.937012 C = 7353.947122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.404 3.596 3 O -0.508 6.508 4 C -0.221 4.221 5 C -0.039 4.039 6 C -0.169 4.169 7 C 0.205 3.795 8 N -0.680 5.680 9 C 0.646 3.354 10 O -0.638 6.638 11 N -0.475 5.475 12 C 0.119 3.881 13 C -0.333 4.333 14 H 0.074 0.926 15 C -0.002 4.002 16 N -0.900 5.900 17 Si 0.991 3.009 18 H -0.268 1.268 19 H -0.272 1.272 20 H -0.276 1.276 21 C -0.165 4.165 22 C -0.036 4.036 23 H 0.116 0.884 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.144 0.856 27 H 0.153 0.847 28 H 0.415 0.585 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.273 0.727 33 H 0.114 0.886 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.667 12.248 2.487 12.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.286 3.714 3 O -0.388 6.388 4 C -0.223 4.223 5 C -0.058 4.058 6 C -0.190 4.190 7 C 0.106 3.894 8 N -0.329 5.329 9 C 0.349 3.651 10 O -0.522 6.522 11 N -0.197 5.197 12 C -0.024 4.024 13 C -0.462 4.462 14 H 0.092 0.908 15 C -0.204 4.204 16 N -0.538 5.538 17 Si 0.814 3.186 18 H -0.193 1.193 19 H -0.197 1.197 20 H -0.202 1.202 21 C -0.186 4.186 22 C -0.054 4.054 23 H 0.135 0.865 24 H 0.111 0.889 25 H 0.121 0.879 26 H 0.162 0.838 27 H 0.171 0.829 28 H 0.255 0.745 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.929 12.516 2.163 12.847 hybrid contribution 0.396 -1.274 -0.145 1.342 sum -1.533 11.242 2.018 11.524 Atomic orbital electron populations 1.22273 0.90926 1.05950 1.06221 1.22785 0.93203 0.86503 0.68899 1.90505 1.73251 1.35286 1.39726 1.20597 0.94815 0.95035 1.11901 1.21085 0.93470 0.98103 0.93129 1.20776 1.01314 0.89818 1.07136 1.18210 0.91920 0.85181 0.94093 1.42649 1.25332 1.08563 1.56310 1.16218 0.83804 0.81651 0.83430 1.90714 1.27503 1.84715 1.49314 1.42968 1.23400 1.05777 1.47579 1.21421 0.85532 1.00240 0.95202 1.19465 1.31633 0.84034 1.11019 0.90760 1.26025 0.96785 1.00678 0.96873 1.70090 1.43093 1.24083 1.16578 0.85031 0.78620 0.76729 0.78172 1.19264 1.19695 1.20179 1.20993 0.93385 0.99588 1.04664 1.21272 1.01300 0.89723 0.93150 0.86548 0.88883 0.87932 0.83843 0.82940 0.74549 0.93813 0.91679 0.91845 0.91775 0.86772 0.82108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.84 9.75 71.24 0.69 -2.14 16 2 C 0.40 9.39 7.21 27.93 0.20 9.59 16 3 O -0.51 -14.97 17.08 -3.10 -0.05 -15.02 16 4 C -0.22 -5.67 5.87 -20.14 -0.12 -5.79 16 5 C -0.04 -1.01 9.54 22.33 0.21 -0.80 16 6 C -0.17 -4.55 9.90 22.13 0.22 -4.33 16 7 C 0.20 6.92 6.29 38.44 0.24 7.16 16 8 N -0.68 -25.09 5.19 -317.15 -1.65 -26.74 16 9 C 0.65 31.18 7.96 179.05 1.43 32.61 16 10 O -0.64 -35.16 13.67 -3.96 -0.05 -35.22 16 11 N -0.47 -23.87 3.01 -675.95 -2.04 -25.91 16 12 C 0.12 4.98 8.41 127.77 1.07 6.05 16 13 C -0.33 -18.51 9.25 84.02 0.78 -17.73 16 14 H 0.07 4.39 7.44 -2.91 -0.02 4.37 16 15 C 0.00 -0.10 4.98 84.90 0.42 0.32 16 16 N -0.90 -46.71 10.93 21.66 0.24 -46.47 16 17 Si 0.99 41.53 29.58 68.60 2.03 43.56 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 20 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 21 C -0.17 -5.73 8.58 22.12 0.19 -5.54 16 22 C -0.04 -0.94 9.31 22.33 0.21 -0.74 16 23 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.10 1.19 6.45 -2.38 -0.02 1.17 16 26 H 0.14 3.33 7.64 -2.91 -0.02 3.31 16 27 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 28 H 0.42 12.53 6.61 -92.71 -0.61 11.92 16 29 H 0.04 1.88 7.89 -2.39 -0.02 1.86 16 30 H 0.06 2.91 6.74 -2.39 -0.02 2.90 16 31 H 0.06 2.04 6.57 -2.39 -0.02 2.02 16 32 H 0.27 13.33 8.31 -92.70 -0.77 12.56 16 33 H 0.11 4.72 6.36 -2.91 -0.02 4.70 16 34 H 0.16 3.08 6.34 -2.91 -0.02 3.06 16 Total: -1.00 -69.46 292.54 4.55 -64.91 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.53 Total: 22.21 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 5.55 Total: 18.68 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -3.45 Total: -99.12 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -0.11 Total: -50.24 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -69.46 4.55 -64.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049539.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.474 kcal (2) G-P(sol) polarization free energy of solvation -69.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds