Wall clock time and date at job start Mon Mar 30 2020 04:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52506 * 2 1 4 4 C 1.53044 * 109.49783 * 239.92010 * 2 1 3 5 5 C 1.53045 * 109.53642 * 178.68055 * 4 2 1 6 6 C 1.52761 * 109.38128 * 61.23877 * 5 4 2 7 7 N 1.46924 * 109.00981 * 305.58909 * 6 5 4 8 8 S 1.65600 * 120.62618 * 233.58690 * 7 6 5 9 9 O 1.42100 * 106.40057 * 156.18202 * 8 7 6 10 10 O 1.42096 * 106.40728 * 23.25542 * 8 7 6 11 11 N 1.65609 * 107.21596 * 269.71590 * 8 7 6 12 12 C 1.46496 * 120.00131 * 269.99901 * 11 8 7 13 13 C 1.36937 * 119.99579 * 90.00594 * 11 8 7 14 14 H 1.07995 * 120.00027 * 338.41449 * 13 11 8 15 15 C 1.38811 * 119.99809 * 158.42233 * 13 11 8 16 16 N 1.31618 * 119.99765 * 348.64730 * 15 13 11 17 17 Si 1.86803 * 120.00095 * 168.37743 * 15 13 11 18 18 H 1.48495 * 109.47302 * 89.99542 * 17 15 13 19 19 H 1.48499 * 109.47031 * 209.99878 * 17 15 13 20 20 H 1.48498 * 109.46791 * 329.99268 * 17 15 13 21 21 C 1.46921 * 118.74376 * 53.30936 * 7 6 5 22 22 H 1.08999 * 109.47443 * 299.91811 * 1 2 3 23 23 H 1.09005 * 109.47782 * 59.91934 * 1 2 3 24 24 H 1.09003 * 109.47349 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.45765 * 298.69765 * 4 2 1 26 26 H 1.08997 * 109.45920 * 58.67369 * 4 2 1 27 27 H 1.08996 * 109.49577 * 181.31551 * 5 4 2 28 28 H 1.08998 * 109.49482 * 301.38257 * 5 4 2 29 29 H 1.09004 * 109.50847 * 185.70274 * 6 5 4 30 30 H 1.09000 * 109.43070 * 65.42535 * 6 5 4 31 31 H 1.08997 * 109.47453 * 265.11756 * 12 11 8 32 32 H 1.09004 * 109.46994 * 25.11364 * 12 11 8 33 33 H 1.08998 * 109.47212 * 145.11255 * 12 11 8 34 34 H 0.97012 * 119.99599 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.58490 * 66.42911 * 21 7 6 36 36 H 1.08999 * 109.59225 * 186.71565 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5708 -0.6949 -1.2660 6 6 4.1055 -1.4214 -0.0332 7 7 3.5045 -0.8290 1.1695 8 16 4.4587 -0.2840 2.4084 9 8 3.6923 0.6869 3.1078 10 8 5.7326 -0.0083 1.8424 11 7 4.6755 -1.5501 3.4537 12 6 3.7359 -1.7572 4.5583 13 6 5.7333 -2.4033 3.2854 14 1 6.2131 -2.4850 2.3213 15 6 6.1886 -3.1634 4.3539 16 7 5.7610 -2.9085 5.5723 17 14 7.4024 -4.5530 4.0616 18 1 8.7882 -4.0296 4.1648 19 1 7.1963 -5.6129 5.0811 20 1 7.1874 -5.1211 2.7066 21 6 2.0413 -0.7237 1.2496 22 1 -0.3634 0.5125 0.8907 23 1 -0.3635 0.5151 -0.8893 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6967 -1.7573 -1.2353 26 1 1.6583 -0.2244 -2.1389 27 1 3.9334 -1.1896 -2.1671 28 1 3.9158 0.3390 -1.2547 29 1 5.1896 -1.3158 0.0100 30 1 3.8413 -2.4773 -0.0915 31 1 4.1245 -1.2833 5.4597 32 1 2.7721 -1.3166 4.3029 33 1 3.6117 -2.8257 4.7343 34 1 6.0796 -3.4395 6.3191 35 1 1.6053 -1.7216 1.2981 36 1 1.7636 -0.1600 2.1403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049663.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:38 Heat of formation + Delta-G solvation = -77.370929 kcal Electronic energy + Delta-G solvation = -19384.083643 eV Core-core repulsion = 16415.977384 eV Total energy + Delta-G solvation = -2968.106259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.45730 -36.29647 -35.36444 -34.79843 -33.16067 -31.56719 -31.05413 -26.65677 -26.17709 -24.22900 -23.28858 -21.93434 -19.92187 -18.46311 -17.54981 -16.69415 -16.30180 -15.40648 -14.70552 -14.36419 -14.22999 -13.96635 -13.77181 -13.34889 -13.09893 -12.53342 -12.50349 -12.05685 -11.81039 -11.80086 -11.34178 -11.20070 -11.12408 -11.07767 -10.88187 -10.85280 -10.70276 -10.58406 -10.29677 -10.28749 -10.14481 -9.97557 -9.05641 -8.50890 -7.86714 -6.06299 -3.77491 1.61454 3.26661 3.32909 3.35039 3.88722 4.31662 4.62885 4.80432 4.91393 4.94618 5.16965 5.19753 5.45392 5.47091 5.55645 5.57941 5.68343 5.76301 5.86655 5.98008 6.01791 6.08521 6.12961 6.21810 6.28096 6.33579 6.51664 6.61603 6.97311 7.10704 7.28600 7.57015 7.75051 8.55565 9.11457 9.47861 10.97242 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028552 B = 0.007224 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.431866 B = 3874.979165 C = 4156.914594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.072 0.928 4 C -0.109 4.109 5 C -0.133 4.133 6 C 0.123 3.877 7 N -1.010 6.010 8 S 2.768 3.232 9 O -1.005 7.005 10 O -0.987 6.987 11 N -0.865 5.865 12 C 0.142 3.858 13 C -0.311 4.311 14 H 0.094 0.906 15 C 0.036 3.964 16 N -0.890 5.890 17 Si 0.916 3.084 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.126 3.874 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.262 0.738 35 H 0.061 0.939 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.887 1.161 -10.631 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.091 0.909 4 C -0.147 4.147 5 C -0.172 4.172 6 C -0.003 4.003 7 N -0.848 5.848 8 S 2.780 3.220 9 O -0.989 6.989 10 O -0.971 6.971 11 N -0.702 5.702 12 C -0.005 4.005 13 C -0.441 4.441 14 H 0.112 0.888 15 C -0.168 4.168 16 N -0.530 5.530 17 Si 0.743 3.257 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.000 4.000 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.507 1.984 -10.355 13.548 hybrid contribution 0.461 -1.203 -0.033 1.289 sum -8.046 0.781 -10.389 13.163 Atomic orbital electron populations 1.21775 0.94878 1.01849 1.01753 1.21483 0.95396 1.00205 0.95564 0.90905 1.21521 0.95527 1.00556 0.97095 1.21819 0.95896 1.01471 0.97999 1.21196 0.98545 0.96668 0.83848 1.58577 1.15595 1.78148 1.32431 1.01996 0.72709 0.73869 0.73406 1.93486 1.73236 1.59176 1.73024 1.93484 1.40239 1.84295 1.79041 1.53016 1.33563 1.44499 1.39167 1.21021 0.87585 1.01847 0.90020 1.19045 1.08622 1.19346 0.97095 0.88843 1.25131 0.97707 0.99319 0.94610 1.70083 1.44845 1.39818 0.98281 0.86128 0.80736 0.80936 0.77895 1.20523 1.21070 1.19787 1.21357 0.80073 1.00199 0.98347 0.92402 0.92701 0.92577 0.91908 0.92265 0.91185 0.91743 0.89071 0.91958 0.92514 0.96376 0.91905 0.92772 0.92037 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.20 37.15 0.34 -1.11 16 2 C -0.11 -1.34 2.87 -90.50 -0.26 -1.60 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.24 5.17 -26.69 -0.14 -1.38 16 5 C -0.13 -1.69 6.07 -26.83 -0.16 -1.85 16 6 C 0.12 1.95 6.45 -3.93 -0.03 1.93 16 7 N -1.01 -18.25 3.35 -113.77 -0.38 -18.63 16 8 S 2.77 63.64 6.06 -107.50 -0.65 62.99 16 9 O -1.01 -24.34 15.70 -57.17 -0.90 -25.24 16 10 O -0.99 -25.10 15.79 -57.17 -0.90 -26.00 16 11 N -0.87 -21.87 3.37 -66.69 -0.22 -22.09 16 12 C 0.14 3.41 8.59 59.84 0.51 3.93 16 13 C -0.31 -8.38 9.20 -15.06 -0.14 -8.51 16 14 H 0.09 2.45 7.64 -52.49 -0.40 2.05 16 15 C 0.04 0.97 5.14 -17.43 -0.09 0.88 16 16 N -0.89 -24.74 10.54 55.49 0.58 -24.16 16 17 Si 0.92 20.87 29.57 -169.99 -5.03 15.84 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C 0.13 1.93 5.76 -3.71 -0.02 1.90 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.57 6.91 -51.93 -0.36 1.21 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.47 7.40 -51.93 -0.38 1.08 16 32 H 0.02 0.37 7.61 -51.93 -0.40 -0.02 16 33 H 0.06 1.54 7.18 -51.93 -0.37 1.16 16 34 H 0.26 6.93 8.31 -40.81 -0.34 6.59 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.41 6.92 -51.93 -0.36 1.05 16 LS Contribution 297.52 15.07 4.48 4.48 Total: -1.00 -31.52 297.52 -8.63 -40.15 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.63 Total: -1.53 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 0.02 Total: -5.81 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -0.02 Total: -64.88 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -1.80 Total: -51.24 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 16 Polarization: 63.64 SS G_CDS: -0.65 Total: 62.99 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.52 -8.63 -40.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049663.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.217 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds