Wall clock time and date at job start Mon Mar 30 2020 04:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52506 * 2 1 4 4 C 1.53044 * 109.49783 * 239.92010 * 2 1 3 5 5 C 1.53045 * 109.53642 * 178.68055 * 4 2 1 6 6 C 1.52761 * 109.38128 * 61.23877 * 5 4 2 7 7 N 1.46924 * 109.00981 * 305.58909 * 6 5 4 8 8 S 1.65600 * 120.62618 * 233.58690 * 7 6 5 9 9 O 1.42100 * 106.40057 * 156.18202 * 8 7 6 10 10 O 1.42096 * 106.40728 * 23.25542 * 8 7 6 11 11 N 1.65609 * 107.21596 * 269.71590 * 8 7 6 12 12 C 1.46496 * 120.00131 * 269.99901 * 11 8 7 13 13 C 1.36937 * 119.99579 * 90.00594 * 11 8 7 14 14 H 1.07995 * 120.00027 * 338.41449 * 13 11 8 15 15 C 1.38811 * 119.99809 * 158.42233 * 13 11 8 16 16 N 1.31618 * 119.99765 * 348.64730 * 15 13 11 17 17 Si 1.86803 * 120.00095 * 168.37743 * 15 13 11 18 18 H 1.48495 * 109.47302 * 89.99542 * 17 15 13 19 19 H 1.48499 * 109.47031 * 209.99878 * 17 15 13 20 20 H 1.48498 * 109.46791 * 329.99268 * 17 15 13 21 21 C 1.46921 * 118.74376 * 53.30936 * 7 6 5 22 22 H 1.08999 * 109.47443 * 299.91811 * 1 2 3 23 23 H 1.09005 * 109.47782 * 59.91934 * 1 2 3 24 24 H 1.09003 * 109.47349 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.45765 * 298.69765 * 4 2 1 26 26 H 1.08997 * 109.45920 * 58.67369 * 4 2 1 27 27 H 1.08996 * 109.49577 * 181.31551 * 5 4 2 28 28 H 1.08998 * 109.49482 * 301.38257 * 5 4 2 29 29 H 1.09004 * 109.50847 * 185.70274 * 6 5 4 30 30 H 1.09000 * 109.43070 * 65.42535 * 6 5 4 31 31 H 1.08997 * 109.47453 * 265.11756 * 12 11 8 32 32 H 1.09004 * 109.46994 * 25.11364 * 12 11 8 33 33 H 1.08998 * 109.47212 * 145.11255 * 12 11 8 34 34 H 0.97012 * 119.99599 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.58490 * 66.42911 * 21 7 6 36 36 H 1.08999 * 109.59225 * 186.71565 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5708 -0.6949 -1.2660 6 6 4.1055 -1.4214 -0.0332 7 7 3.5045 -0.8290 1.1695 8 16 4.4587 -0.2840 2.4084 9 8 3.6923 0.6869 3.1078 10 8 5.7326 -0.0083 1.8424 11 7 4.6755 -1.5501 3.4537 12 6 3.7359 -1.7572 4.5583 13 6 5.7333 -2.4033 3.2854 14 1 6.2131 -2.4850 2.3213 15 6 6.1886 -3.1634 4.3539 16 7 5.7610 -2.9085 5.5723 17 14 7.4024 -4.5530 4.0616 18 1 8.7882 -4.0296 4.1648 19 1 7.1963 -5.6129 5.0811 20 1 7.1874 -5.1211 2.7066 21 6 2.0413 -0.7237 1.2496 22 1 -0.3634 0.5125 0.8907 23 1 -0.3635 0.5151 -0.8893 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6967 -1.7573 -1.2353 26 1 1.6583 -0.2244 -2.1389 27 1 3.9334 -1.1896 -2.1671 28 1 3.9158 0.3390 -1.2547 29 1 5.1896 -1.3158 0.0100 30 1 3.8413 -2.4773 -0.0915 31 1 4.1245 -1.2833 5.4597 32 1 2.7721 -1.3166 4.3029 33 1 3.6117 -2.8257 4.7343 34 1 6.0796 -3.4395 6.3191 35 1 1.6053 -1.7216 1.2981 36 1 1.7636 -0.1600 2.1403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049663.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:38 Heat of formation + Delta-G solvation = -99.016058 kcal Electronic energy + Delta-G solvation = -19385.022246 eV Core-core repulsion = 16415.977384 eV Total energy + Delta-G solvation = -2969.044862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.60074 -38.20503 -37.32929 -36.72594 -34.31559 -33.10005 -32.68423 -28.23147 -27.58693 -25.58682 -25.15390 -23.02122 -21.03595 -20.26173 -19.23681 -18.47827 -18.23416 -16.93691 -16.32098 -15.85725 -15.56005 -15.15418 -14.99755 -14.96358 -14.75558 -14.25279 -13.75105 -13.55070 -13.25230 -13.12968 -13.08171 -12.91209 -12.81709 -12.71087 -12.52679 -12.43294 -12.22937 -11.94663 -11.89561 -11.68750 -11.41824 -11.22314 -11.01895 -9.96876 -9.79700 -8.09280 -5.86193 -0.16923 1.46582 1.48029 1.58435 2.22011 2.47650 2.78141 3.15145 3.54188 3.73679 3.93894 4.01099 4.19016 4.26162 4.44605 4.46303 4.60444 4.67382 4.81792 4.87799 4.93671 4.98850 5.01787 5.08687 5.18368 5.26575 5.29810 5.30947 5.48123 5.52392 5.55811 5.70625 5.84079 6.53102 7.09103 7.43013 8.93503 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028552 B = 0.007224 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.431866 B = 3874.979165 C = 4156.914594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 H 0.059 0.941 4 C -0.105 4.105 5 C -0.129 4.129 6 C 0.114 3.886 7 N -1.003 6.003 8 S 2.780 3.220 9 O -1.025 7.025 10 O -1.018 7.018 11 N -0.884 5.884 12 C 0.152 3.848 13 C -0.326 4.326 14 H 0.094 0.906 15 C -0.014 4.014 16 N -0.918 5.918 17 Si 0.979 3.021 18 H -0.281 1.281 19 H -0.280 1.280 20 H -0.259 1.259 21 C 0.117 3.883 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.029 0.971 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.263 0.737 35 H 0.080 0.920 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.014 0.162 -12.725 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.077 0.923 4 C -0.143 4.143 5 C -0.168 4.168 6 C -0.011 4.011 7 N -0.844 5.844 8 S 2.793 3.207 9 O -1.009 7.009 10 O -1.002 7.002 11 N -0.720 5.720 12 C 0.005 3.995 13 C -0.456 4.456 14 H 0.112 0.888 15 C -0.215 4.215 16 N -0.560 5.560 17 Si 0.804 3.196 18 H -0.207 1.207 19 H -0.205 1.205 20 H -0.183 1.183 21 C -0.008 4.008 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.641 0.995 -12.450 15.778 hybrid contribution 0.767 -0.828 0.572 1.265 sum -8.875 0.168 -11.877 14.828 Atomic orbital electron populations 1.21744 0.92639 1.02852 1.02515 1.21499 0.97188 0.99166 0.94738 0.92257 1.21532 0.94128 1.01401 0.97189 1.21831 0.97157 1.00633 0.97218 1.21454 0.97552 0.97994 0.84062 1.58109 1.16621 1.78097 1.31589 1.01544 0.72294 0.73409 0.73466 1.93447 1.73352 1.60083 1.73977 1.93431 1.42465 1.84790 1.79511 1.53164 1.33941 1.44313 1.40572 1.20845 0.88453 1.01120 0.89037 1.19320 1.09478 1.19585 0.97264 0.88810 1.26021 0.99519 1.01605 0.94333 1.70221 1.46027 1.40782 0.98968 0.85150 0.78041 0.77940 0.78504 1.20719 1.20517 1.18252 1.21671 0.78014 1.01556 0.99548 0.92710 0.90966 0.91438 0.90668 0.89898 0.88436 0.92833 0.91134 0.90353 0.95227 0.93600 0.92771 0.92759 0.90213 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.20 71.98 0.66 -1.70 16 2 C -0.11 -2.39 2.87 -10.72 -0.03 -2.42 16 3 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.11 -1.99 5.17 30.62 0.16 -1.83 16 5 C -0.13 -2.95 6.07 30.53 0.19 -2.76 16 6 C 0.11 3.46 6.45 86.22 0.56 4.02 16 7 N -1.00 -35.52 3.35 -513.85 -1.72 -37.24 16 8 S 2.78 129.58 6.06 -56.49 -0.34 129.23 16 9 O -1.02 -50.39 15.70 -128.00 -2.01 -52.40 16 10 O -1.02 -52.93 15.79 -128.00 -2.02 -54.95 16 11 N -0.88 -45.34 3.37 -364.91 -1.23 -46.57 16 12 C 0.15 7.45 8.59 127.77 1.10 8.55 16 13 C -0.33 -17.74 9.20 84.03 0.77 -16.97 16 14 H 0.09 4.96 7.64 -2.91 -0.02 4.94 16 15 C -0.01 -0.76 5.14 84.86 0.44 -0.33 16 16 N -0.92 -51.88 10.54 21.65 0.23 -51.65 16 17 Si 0.98 42.63 29.57 68.60 2.03 44.66 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 C 0.12 3.39 5.76 86.36 0.50 3.88 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 2.42 6.91 -2.38 -0.02 2.40 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.03 1.57 7.40 -2.39 -0.02 1.55 16 32 H 0.05 1.93 7.61 -2.39 -0.02 1.91 16 33 H 0.05 2.69 7.18 -2.39 -0.02 2.68 16 34 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.07 2.34 6.92 -2.39 -0.02 2.32 16 Total: -1.00 -68.21 297.52 0.31 -67.90 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.05 Total: 10.59 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.33 Total: -9.56 kcal Atomic # 7 Polarization: -132.74 SS G_CDS: -2.72 Total: -135.47 kcal Atomic # 8 Polarization: -103.32 SS G_CDS: -4.03 Total: -107.35 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 129.58 SS G_CDS: -0.34 Total: 129.23 kcal Total: -68.21 0.31 -67.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049663.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.115 kcal (2) G-P(sol) polarization free energy of solvation -68.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds