Wall clock time and date at job start Mon Mar 30 2020 04:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.49915 * 2 1 4 4 C 1.53046 * 109.49876 * 120.06535 * 2 1 3 5 5 C 1.53036 * 109.53642 * 181.31382 * 4 2 1 6 6 C 1.53191 * 109.31893 * 298.63399 * 5 4 2 7 7 N 1.46929 * 108.77008 * 54.63676 * 6 5 4 8 8 S 1.65597 * 120.63177 * 126.37187 * 7 6 5 9 9 O 1.42100 * 106.39964 * 336.45913 * 8 7 6 10 10 O 1.42099 * 106.40551 * 203.53767 * 8 7 6 11 11 N 1.65608 * 107.21905 * 89.99433 * 8 7 6 12 12 C 1.46495 * 119.99508 * 90.00327 * 11 8 7 13 13 C 1.36931 * 120.00133 * 270.00366 * 11 8 7 14 14 H 1.08001 * 120.00100 * 23.09871 * 13 11 8 15 15 C 1.38816 * 120.00033 * 203.09992 * 13 11 8 16 16 N 1.31613 * 119.99720 * 11.87060 * 15 13 11 17 17 Si 1.86804 * 119.99857 * 191.87970 * 15 13 11 18 18 H 1.48501 * 109.47200 * 59.99728 * 17 15 13 19 19 H 1.48506 * 109.46515 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47155 * 299.99368 * 17 15 13 21 21 C 1.46924 * 118.73934 * 306.64418 * 7 6 5 22 22 H 1.09002 * 109.47061 * 299.93251 * 1 2 3 23 23 H 1.09001 * 109.47595 * 59.93707 * 1 2 3 24 24 H 1.09005 * 109.47333 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.45795 * 61.29820 * 4 2 1 26 26 H 1.08997 * 109.45913 * 301.33799 * 4 2 1 27 27 H 1.08998 * 109.49717 * 178.68320 * 5 4 2 28 28 H 1.09004 * 109.52453 * 58.60582 * 5 4 2 29 29 H 1.09003 * 109.58802 * 294.85532 * 6 5 4 30 30 H 1.08996 * 109.58712 * 174.42078 * 6 5 4 31 31 H 1.09001 * 109.47203 * 95.05798 * 12 11 8 32 32 H 1.09007 * 109.46938 * 215.05958 * 12 11 8 33 33 H 1.08997 * 109.47364 * 335.05314 * 12 11 8 34 34 H 0.97002 * 119.99790 * 180.02562 * 16 15 13 35 35 H 1.08999 * 109.58935 * 173.15026 * 21 7 6 36 36 H 1.09007 * 109.58465 * 293.57168 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 1.2486 5 6 3.5708 -0.6947 1.2661 6 6 4.1053 -1.4267 0.0311 7 7 3.5046 -0.8294 -1.1693 8 16 4.4586 -0.2848 -2.4084 9 8 5.7324 -0.0085 -1.8424 10 8 3.6921 0.6856 -3.1084 11 7 4.6760 -1.5514 -3.4530 12 6 3.7365 -1.7593 -4.5576 13 6 5.7339 -2.4043 -3.2841 14 1 6.1980 -2.5036 -2.3140 15 6 6.2098 -3.1413 -4.3599 16 7 5.8095 -2.8568 -5.5810 17 14 7.4181 -4.5371 -4.0743 18 1 6.7983 -5.5548 -3.1882 19 1 7.7691 -5.1616 -5.3751 20 1 8.6469 -4.0045 -3.4328 21 6 2.0415 -0.7190 -1.2469 22 1 -0.3633 0.5128 0.8906 23 1 -0.3634 0.5148 -0.8894 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6967 -1.7570 1.2358 26 1 1.6581 -0.2239 2.1390 27 1 3.9334 -1.1891 2.1673 28 1 3.9164 0.3390 1.2542 29 1 3.8375 -2.4819 0.0873 30 1 5.1895 -1.3246 -0.0134 31 1 4.1266 -1.2883 -5.4599 32 1 3.6103 -2.8280 -4.7310 33 1 2.7735 -1.3163 -4.3038 34 1 6.1418 -3.3721 -6.3327 35 1 1.7645 -0.1502 -2.1345 36 1 1.6021 -1.7153 -1.2970 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:42 Heat of formation + Delta-G solvation = -78.005497 kcal Electronic energy + Delta-G solvation = -19381.946929 eV Core-core repulsion = 16413.813153 eV Total energy + Delta-G solvation = -2968.133776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.46464 -36.28694 -35.35264 -34.78825 -33.16688 -31.55444 -31.06287 -26.65965 -26.16957 -24.23006 -23.29463 -21.94253 -19.92210 -18.45944 -17.55045 -16.68515 -16.29108 -15.41031 -14.70684 -14.37134 -14.22625 -13.96690 -13.77301 -13.34524 -13.09281 -12.53753 -12.50457 -12.05765 -11.80301 -11.79633 -11.33716 -11.20309 -11.12248 -11.07369 -10.87912 -10.85247 -10.70346 -10.58369 -10.31742 -10.29634 -10.14559 -9.97509 -9.04807 -8.50909 -7.85274 -6.06559 -3.78484 1.61842 3.27813 3.32264 3.34496 3.89316 4.31923 4.63142 4.80423 4.91487 4.94605 5.16633 5.19448 5.45706 5.46978 5.55686 5.57952 5.68706 5.75843 5.86371 5.97754 6.01677 6.08317 6.12856 6.21814 6.27896 6.33531 6.51510 6.61468 6.95952 7.10272 7.28676 7.55875 7.74679 8.55301 9.11800 9.48128 10.97246 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028696 B = 0.007215 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.518654 B = 3880.138711 C = 4164.901713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.072 0.928 4 C -0.109 4.109 5 C -0.133 4.133 6 C 0.123 3.877 7 N -1.010 6.010 8 S 2.768 3.232 9 O -0.987 6.987 10 O -1.006 7.006 11 N -0.865 5.865 12 C 0.141 3.859 13 C -0.312 4.312 14 H 0.093 0.907 15 C 0.037 3.963 16 N -0.888 5.888 17 Si 0.915 3.085 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.126 3.874 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.953 1.061 10.611 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.091 0.909 4 C -0.147 4.147 5 C -0.172 4.172 6 C -0.003 4.003 7 N -0.847 5.847 8 S 2.780 3.220 9 O -0.970 6.970 10 O -0.990 6.990 11 N -0.702 5.702 12 C -0.006 4.006 13 C -0.442 4.442 14 H 0.110 0.890 15 C -0.167 4.167 16 N -0.529 5.529 17 Si 0.743 3.257 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.000 4.000 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.564 1.899 10.327 13.549 hybrid contribution 0.451 -1.210 0.044 1.292 sum -8.113 0.689 10.370 13.185 Atomic orbital electron populations 1.21774 0.94851 1.01855 1.01759 1.21408 0.95420 1.00247 0.95604 0.90926 1.21520 0.95534 1.00552 0.97090 1.21890 0.95871 1.01433 0.97977 1.21290 0.98551 0.96577 0.83845 1.58557 1.15613 1.77987 1.32586 1.02061 0.72689 0.73847 0.73441 1.93484 1.40244 1.84254 1.79059 1.93484 1.73262 1.59264 1.72973 1.52984 1.33556 1.44271 1.39358 1.21019 0.87694 1.01640 0.90225 1.18993 1.08859 1.19990 0.96348 0.88957 1.25147 0.97581 0.99337 0.94633 1.70060 1.44981 1.39881 0.97944 0.86200 0.80846 0.81331 0.77355 1.20267 1.21105 1.19961 1.21269 0.80092 1.00219 0.98390 0.92701 0.92389 0.92575 0.91909 0.92266 0.91217 0.91720 0.91916 0.89060 0.92385 0.92163 0.96273 0.92699 0.89403 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.20 37.15 0.34 -1.11 16 2 C -0.11 -1.34 2.86 -90.72 -0.26 -1.60 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.11 -1.24 5.17 -26.69 -0.14 -1.38 16 5 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 6 C 0.12 1.95 6.48 -3.71 -0.02 1.92 16 7 N -1.01 -18.24 3.35 -113.76 -0.38 -18.63 16 8 S 2.77 63.72 6.06 -107.50 -0.65 63.07 16 9 O -0.99 -25.18 15.82 -57.17 -0.90 -26.08 16 10 O -1.01 -24.40 15.69 -57.17 -0.90 -25.30 16 11 N -0.86 -21.85 3.36 -66.69 -0.22 -22.08 16 12 C 0.14 3.38 8.60 59.84 0.51 3.90 16 13 C -0.31 -8.39 9.17 -15.06 -0.14 -8.53 16 14 H 0.09 2.41 7.68 -52.49 -0.40 2.01 16 15 C 0.04 1.00 5.12 -17.43 -0.09 0.91 16 16 N -0.89 -24.75 10.65 55.49 0.59 -24.15 16 17 Si 0.92 20.85 29.57 -169.99 -5.03 15.82 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.13 1.93 5.73 -3.93 -0.02 1.90 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 1.57 6.92 -51.93 -0.36 1.21 16 31 H 0.06 1.50 7.35 -51.93 -0.38 1.12 16 32 H 0.06 1.47 7.31 -51.93 -0.38 1.09 16 33 H 0.02 0.39 7.61 -51.93 -0.40 0.00 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.09 1.41 6.91 -51.93 -0.36 1.05 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -31.59 297.73 -8.62 -40.21 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.64 Total: -1.54 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 0.02 Total: -5.82 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.01 Total: -64.86 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -1.80 Total: -51.38 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Atomic # 16 Polarization: 63.72 SS G_CDS: -0.65 Total: 63.07 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.59 -8.62 -40.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.794 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds