Wall clock time and date at job start Mon Mar 30 2020 04:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.49915 * 2 1 4 4 C 1.53046 * 109.49876 * 120.06535 * 2 1 3 5 5 C 1.53036 * 109.53642 * 181.31382 * 4 2 1 6 6 C 1.53191 * 109.31893 * 298.63399 * 5 4 2 7 7 N 1.46929 * 108.77008 * 54.63676 * 6 5 4 8 8 S 1.65597 * 120.63177 * 126.37187 * 7 6 5 9 9 O 1.42100 * 106.39964 * 336.45913 * 8 7 6 10 10 O 1.42099 * 106.40551 * 203.53767 * 8 7 6 11 11 N 1.65608 * 107.21905 * 89.99433 * 8 7 6 12 12 C 1.46495 * 119.99508 * 90.00327 * 11 8 7 13 13 C 1.36931 * 120.00133 * 270.00366 * 11 8 7 14 14 H 1.08001 * 120.00100 * 23.09871 * 13 11 8 15 15 C 1.38816 * 120.00033 * 203.09992 * 13 11 8 16 16 N 1.31613 * 119.99720 * 11.87060 * 15 13 11 17 17 Si 1.86804 * 119.99857 * 191.87970 * 15 13 11 18 18 H 1.48501 * 109.47200 * 59.99728 * 17 15 13 19 19 H 1.48506 * 109.46515 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47155 * 299.99368 * 17 15 13 21 21 C 1.46924 * 118.73934 * 306.64418 * 7 6 5 22 22 H 1.09002 * 109.47061 * 299.93251 * 1 2 3 23 23 H 1.09001 * 109.47595 * 59.93707 * 1 2 3 24 24 H 1.09005 * 109.47333 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.45795 * 61.29820 * 4 2 1 26 26 H 1.08997 * 109.45913 * 301.33799 * 4 2 1 27 27 H 1.08998 * 109.49717 * 178.68320 * 5 4 2 28 28 H 1.09004 * 109.52453 * 58.60582 * 5 4 2 29 29 H 1.09003 * 109.58802 * 294.85532 * 6 5 4 30 30 H 1.08996 * 109.58712 * 174.42078 * 6 5 4 31 31 H 1.09001 * 109.47203 * 95.05798 * 12 11 8 32 32 H 1.09007 * 109.46938 * 215.05958 * 12 11 8 33 33 H 1.08997 * 109.47364 * 335.05314 * 12 11 8 34 34 H 0.97002 * 119.99790 * 180.02562 * 16 15 13 35 35 H 1.08999 * 109.58935 * 173.15026 * 21 7 6 36 36 H 1.09007 * 109.58465 * 293.57168 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 1.2486 5 6 3.5708 -0.6947 1.2661 6 6 4.1053 -1.4267 0.0311 7 7 3.5046 -0.8294 -1.1693 8 16 4.4586 -0.2848 -2.4084 9 8 5.7324 -0.0085 -1.8424 10 8 3.6921 0.6856 -3.1084 11 7 4.6760 -1.5514 -3.4530 12 6 3.7365 -1.7593 -4.5576 13 6 5.7339 -2.4043 -3.2841 14 1 6.1980 -2.5036 -2.3140 15 6 6.2098 -3.1413 -4.3599 16 7 5.8095 -2.8568 -5.5810 17 14 7.4181 -4.5371 -4.0743 18 1 6.7983 -5.5548 -3.1882 19 1 7.7691 -5.1616 -5.3751 20 1 8.6469 -4.0045 -3.4328 21 6 2.0415 -0.7190 -1.2469 22 1 -0.3633 0.5128 0.8906 23 1 -0.3634 0.5148 -0.8894 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6967 -1.7570 1.2358 26 1 1.6581 -0.2239 2.1390 27 1 3.9334 -1.1891 2.1673 28 1 3.9164 0.3390 1.2542 29 1 3.8375 -2.4819 0.0873 30 1 5.1895 -1.3246 -0.0134 31 1 4.1266 -1.2883 -5.4599 32 1 3.6103 -2.8280 -4.7310 33 1 2.7735 -1.3163 -4.3038 34 1 6.1418 -3.3721 -6.3327 35 1 1.7645 -0.1502 -2.1345 36 1 1.6021 -1.7153 -1.2970 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:41 Heat of formation + Delta-G solvation = -99.723402 kcal Electronic energy + Delta-G solvation = -19382.888688 eV Core-core repulsion = 16413.813153 eV Total energy + Delta-G solvation = -2969.075535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.60627 -38.19894 -37.31823 -36.71967 -34.32261 -33.11007 -32.66913 -28.22331 -27.58844 -25.58932 -25.15717 -23.02735 -21.03624 -20.25952 -19.23649 -18.47206 -18.22384 -16.93771 -16.33364 -15.86292 -15.55049 -15.15662 -14.99355 -14.96135 -14.75326 -14.25369 -13.73877 -13.54884 -13.25062 -13.13562 -13.08275 -12.90724 -12.81732 -12.68145 -12.52570 -12.43543 -12.26713 -11.94988 -11.91146 -11.68791 -11.42127 -11.21974 -11.00447 -9.95953 -9.79098 -8.09678 -5.87304 -0.16682 1.46938 1.49488 1.56875 2.22582 2.47886 2.78300 3.14840 3.54566 3.73737 3.94083 4.01176 4.18686 4.26328 4.44589 4.46339 4.60520 4.67641 4.81593 4.87680 4.93567 4.98669 5.00582 5.08634 5.18324 5.26775 5.29835 5.30971 5.48077 5.51609 5.55715 5.70245 5.83897 6.52629 7.09304 7.43188 8.93248 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028696 B = 0.007215 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.518654 B = 3880.138711 C = 4164.901713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 H 0.058 0.942 4 C -0.105 4.105 5 C -0.129 4.129 6 C 0.114 3.886 7 N -1.003 6.003 8 S 2.779 3.221 9 O -1.019 7.019 10 O -1.026 7.026 11 N -0.883 5.883 12 C 0.151 3.849 13 C -0.327 4.327 14 H 0.094 0.906 15 C -0.013 4.013 16 N -0.917 5.917 17 Si 0.980 3.020 18 H -0.262 1.262 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.117 3.883 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.263 0.737 35 H 0.074 0.926 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.094 0.026 12.683 16.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 H 0.077 0.923 4 C -0.142 4.142 5 C -0.168 4.168 6 C -0.011 4.011 7 N -0.844 5.844 8 S 2.792 3.208 9 O -1.002 7.002 10 O -1.009 7.009 11 N -0.719 5.719 12 C 0.004 3.996 13 C -0.458 4.458 14 H 0.111 0.889 15 C -0.214 4.214 16 N -0.559 5.559 17 Si 0.804 3.196 18 H -0.187 1.187 19 H -0.209 1.209 20 H -0.199 1.199 21 C -0.008 4.008 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.713 0.873 12.400 15.775 hybrid contribution 0.759 -0.825 -0.554 1.251 sum -8.954 0.048 11.846 14.849 Atomic orbital electron populations 1.21743 0.92605 1.02860 1.02524 1.21425 0.97216 0.99202 0.94794 0.92297 1.21530 0.94128 1.01406 0.97180 1.21902 0.97139 1.00574 0.97203 1.21551 0.97549 0.97923 0.84060 1.58098 1.16638 1.77938 1.31734 1.01608 0.72276 0.73410 0.73502 1.93431 1.42503 1.84767 1.79532 1.93444 1.73367 1.60171 1.73941 1.53138 1.33913 1.44140 1.40691 1.20850 0.88551 1.00978 0.89216 1.19279 1.09666 1.20256 0.96557 0.88876 1.26041 0.99373 1.01658 0.94344 1.70202 1.46170 1.40871 0.98623 0.85211 0.78495 0.78480 0.77438 1.18662 1.20868 1.19898 1.21581 0.78037 1.01571 0.99583 0.90970 0.92694 0.91427 0.90653 0.89905 0.88470 0.92838 0.90266 0.91139 0.95103 0.92951 0.93494 0.92727 0.90771 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.20 71.98 0.66 -1.69 16 2 C -0.11 -2.40 2.86 -10.86 -0.03 -2.43 16 3 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 4 C -0.11 -1.99 5.17 30.62 0.16 -1.83 16 5 C -0.13 -2.94 6.08 30.67 0.19 -2.76 16 6 C 0.11 3.45 6.48 86.36 0.56 4.01 16 7 N -1.00 -35.52 3.35 -513.84 -1.72 -37.24 16 8 S 2.78 129.79 6.06 -56.49 -0.34 129.44 16 9 O -1.02 -53.16 15.82 -128.00 -2.03 -55.18 16 10 O -1.03 -50.53 15.69 -128.00 -2.01 -52.54 16 11 N -0.88 -45.30 3.36 -364.91 -1.23 -46.53 16 12 C 0.15 7.37 8.60 127.77 1.10 8.47 16 13 C -0.33 -17.80 9.17 84.04 0.77 -17.03 16 14 H 0.09 4.92 7.68 -2.91 -0.02 4.90 16 15 C -0.01 -0.71 5.12 84.86 0.43 -0.28 16 16 N -0.92 -51.90 10.65 21.65 0.23 -51.67 16 17 Si 0.98 42.60 29.57 68.60 2.03 44.63 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.12 3.39 5.73 86.22 0.49 3.88 16 22 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.07 2.42 6.92 -2.39 -0.02 2.40 16 31 H 0.03 1.64 7.35 -2.39 -0.02 1.62 16 32 H 0.05 2.59 7.31 -2.38 -0.02 2.57 16 33 H 0.05 1.97 7.61 -2.39 -0.02 1.95 16 34 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 35 H 0.07 2.34 6.91 -2.39 -0.02 2.32 16 36 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -68.38 297.73 0.31 -68.07 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.05 Total: 10.67 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 4.33 Total: -9.65 kcal Atomic # 7 Polarization: -132.72 SS G_CDS: -2.72 Total: -135.44 kcal Atomic # 8 Polarization: -103.69 SS G_CDS: -4.03 Total: -107.72 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 129.79 SS G_CDS: -0.34 Total: 129.44 kcal Total: -68.38 0.31 -68.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.654 kcal (2) G-P(sol) polarization free energy of solvation -68.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds