Wall clock time and date at job start Mon Mar 30 2020 04:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.70073 * 2 1 4 4 C 1.53192 * 109.58953 * 239.64934 * 2 1 3 5 5 C 1.53042 * 109.31374 * 185.57514 * 4 2 1 6 6 C 1.53038 * 109.54019 * 61.36470 * 5 4 2 7 7 C 1.53191 * 109.30997 * 298.63716 * 6 5 4 8 8 N 1.46924 * 108.77998 * 54.63473 * 7 6 5 9 9 S 1.65599 * 120.63201 * 126.41119 * 8 7 6 10 10 O 1.42095 * 106.40299 * 212.79620 * 9 8 7 11 11 O 1.42102 * 106.40223 * 345.71739 * 9 8 7 12 12 N 1.65602 * 107.21649 * 99.25878 * 9 8 7 13 13 C 1.46507 * 119.99670 * 278.47879 * 12 9 8 14 14 C 1.36937 * 120.00229 * 98.47583 * 12 9 8 15 15 H 1.08000 * 119.99606 * 23.48098 * 14 12 9 16 16 C 1.38808 * 120.00048 * 203.48398 * 14 12 9 17 17 N 1.31618 * 120.00113 * 21.10954 * 16 14 12 18 18 Si 1.86800 * 120.00026 * 201.11413 * 16 14 12 19 19 H 1.48500 * 109.47461 * 94.98699 * 18 16 14 20 20 H 1.48503 * 109.47305 * 214.98902 * 18 16 14 21 21 H 1.48502 * 109.47051 * 334.98490 * 18 16 14 22 22 H 1.09001 * 109.46830 * 170.94094 * 1 2 3 23 23 H 1.09002 * 109.47053 * 290.93620 * 1 2 3 24 24 H 1.08996 * 109.47425 * 50.93948 * 1 2 3 25 25 H 1.09001 * 109.49939 * 65.62232 * 4 2 1 26 26 H 1.08997 * 109.52132 * 305.54208 * 4 2 1 27 27 H 1.09003 * 109.45459 * 181.38571 * 5 4 2 28 28 H 1.08994 * 109.45840 * 301.33781 * 5 4 2 29 29 H 1.09004 * 109.49591 * 58.58071 * 6 5 4 30 30 H 1.08997 * 109.49903 * 178.68162 * 6 5 4 31 31 H 1.08996 * 109.58452 * 294.84359 * 7 6 5 32 32 H 1.09006 * 109.70031 * 174.49054 * 7 6 5 33 33 H 1.09000 * 109.47426 * 94.52062 * 13 12 9 34 34 H 1.09000 * 109.46690 * 214.51963 * 13 12 9 35 35 H 1.09003 * 109.47060 * 334.51361 * 13 12 9 36 36 H 0.97007 * 120.00102 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5676 -0.8478 -1.1702 6 6 3.9571 -1.6656 0.0634 7 6 3.4651 -0.9469 1.3236 8 7 2.0226 -0.6996 1.1944 9 16 0.9720 -1.1994 2.3729 10 8 -0.2396 -1.5389 1.7126 11 8 1.6920 -2.1099 3.1926 12 7 0.6354 0.1169 3.3198 13 6 1.5689 0.5176 4.3755 14 6 -0.5153 0.8307 3.1161 15 1 -1.3631 0.3632 2.6375 16 6 -0.5920 2.1551 3.5247 17 7 0.5095 2.8498 3.7155 18 14 -2.2586 2.9513 3.8040 19 1 -2.6177 2.8568 5.2419 20 1 -2.1985 4.3795 3.4017 21 1 -3.2845 2.2506 2.9905 22 1 -0.3633 -1.0149 -0.1618 23 1 -0.3633 0.3672 0.9598 24 1 -0.3634 0.6475 -0.7979 25 1 1.7660 -0.1667 -2.1369 26 1 1.6031 -1.7252 -1.2920 27 1 3.9378 -1.3446 -2.0670 28 1 4.0061 0.1475 -1.0994 29 1 3.4984 -2.6527 0.0051 30 1 5.0413 -1.7694 0.1035 31 1 3.9903 0.0021 1.4316 32 1 3.6522 -1.5697 2.1985 33 1 2.2441 1.2827 3.9924 34 1 1.0102 0.9169 5.2220 35 1 2.1467 -0.3487 4.6977 36 1 0.4559 3.7752 4.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049677.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:17 Heat of formation + Delta-G solvation = -84.453040 kcal Electronic energy + Delta-G solvation = -19938.544229 eV Core-core repulsion = 16970.130866 eV Total energy + Delta-G solvation = -2968.413362 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.53350 -38.16164 -37.37523 -36.52823 -33.59455 -33.22209 -32.87965 -28.37854 -27.79923 -25.40968 -24.79283 -23.00495 -21.29283 -20.19879 -18.93379 -18.43598 -17.89219 -16.95724 -16.36430 -15.86023 -15.43542 -15.17529 -15.07381 -14.87262 -14.55311 -14.23594 -13.71017 -13.64672 -13.33245 -13.24853 -13.10501 -12.77018 -12.68951 -12.55122 -12.24068 -12.15102 -12.07708 -11.89772 -11.73276 -11.57545 -11.41655 -11.09849 -10.83870 -9.88252 -9.61136 -8.25398 -5.85744 0.06252 1.47630 1.51455 1.61107 2.24451 2.49504 2.94423 3.03398 3.75325 3.79972 3.98525 4.06933 4.26656 4.34954 4.48208 4.52654 4.58251 4.79278 4.83219 4.92526 4.96038 4.99790 5.08991 5.15084 5.21223 5.23652 5.34665 5.44856 5.46727 5.54693 5.60805 5.74846 6.05491 6.51039 6.98907 7.40219 8.76081 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026952 B = 0.008638 C = 0.007996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.626107 B = 3240.739165 C = 3500.946436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.159 3.841 3 H 0.062 0.938 4 C -0.124 4.124 5 C -0.111 4.111 6 C -0.128 4.128 7 C 0.110 3.890 8 N -1.011 6.011 9 S 2.713 3.287 10 O -1.014 7.014 11 O -1.037 7.037 12 N -0.854 5.854 13 C 0.133 3.867 14 C -0.304 4.304 15 H 0.097 0.903 16 C 0.007 3.993 17 N -0.875 5.875 18 Si 0.972 3.028 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.266 1.266 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 -1.685 -7.200 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.053 3.947 3 H 0.080 0.920 4 C -0.163 4.163 5 C -0.149 4.149 6 C -0.167 4.167 7 C -0.016 4.016 8 N -0.848 5.848 9 S 2.734 3.266 10 O -0.998 6.998 11 O -1.021 7.021 12 N -0.686 5.686 13 C -0.013 4.013 14 C -0.443 4.443 15 H 0.115 0.885 16 C -0.201 4.201 17 N -0.514 5.514 18 Si 0.796 3.204 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.190 1.190 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.500 -2.541 -7.067 9.308 hybrid contribution -0.604 0.872 0.355 1.119 sum 4.896 -1.669 -6.711 8.473 Atomic orbital electron populations 1.22775 0.94405 1.03346 1.04111 1.20842 0.93730 0.95182 0.84914 0.92023 1.21955 0.96933 1.00505 0.96921 1.21468 0.94747 1.00723 0.97934 1.21878 1.01826 0.98604 0.94381 1.21486 0.80390 1.00356 0.99378 1.58873 1.17844 1.73404 1.34710 1.05624 0.72506 0.76192 0.72237 1.93484 1.47211 1.85055 1.74094 1.93360 1.74703 1.64839 1.69242 1.53633 1.26812 1.49474 1.38657 1.21027 0.92224 0.97700 0.90385 1.19491 0.89426 0.94323 1.41061 0.88531 1.26074 1.01119 0.95868 0.97056 1.70181 1.28667 1.09389 1.43116 0.85231 0.78844 0.77516 0.78785 1.20011 1.20298 1.18975 0.91186 0.91289 0.90892 0.89399 0.92722 0.89867 0.91329 0.92846 0.88687 0.91465 0.90736 0.93488 0.92870 0.93219 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.45 7.57 71.98 0.55 -6.90 16 2 C 0.16 5.67 3.51 44.97 0.16 5.83 16 3 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 4 C -0.12 -3.42 5.36 30.67 0.16 -3.25 16 5 C -0.11 -2.55 5.88 30.62 0.18 -2.37 16 6 C -0.13 -3.26 6.08 30.67 0.19 -3.07 16 7 C 0.11 3.58 6.51 86.36 0.56 4.15 16 8 N -1.01 -39.60 3.35 -490.77 -1.64 -41.24 16 9 S 2.71 127.97 5.62 -56.49 -0.32 127.65 16 10 O -1.01 -51.29 12.26 -128.00 -1.57 -52.86 16 11 O -1.04 -51.56 15.29 -128.00 -1.96 -53.52 16 12 N -0.85 -42.45 3.35 -364.88 -1.22 -43.67 16 13 C 0.13 6.20 9.02 127.77 1.15 7.36 16 14 C -0.30 -15.74 7.41 84.03 0.62 -15.12 16 15 H 0.10 5.13 6.62 -2.91 -0.02 5.11 16 16 C 0.01 0.32 4.91 84.86 0.42 0.74 16 17 N -0.87 -44.29 11.25 21.65 0.24 -44.04 16 18 Si 0.97 39.90 29.60 68.60 2.03 41.93 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H 0.07 2.91 6.48 -2.39 -0.02 2.90 16 23 H 0.07 3.20 3.50 -2.39 -0.01 3.19 16 24 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.60 8.12 -2.39 -0.02 1.58 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.07 2.59 6.74 -2.38 -0.02 2.57 16 33 H 0.05 2.21 7.38 -2.39 -0.02 2.19 16 34 H 0.05 2.52 7.53 -2.39 -0.02 2.50 16 35 H 0.05 2.14 7.06 -2.39 -0.02 2.12 16 36 H 0.27 12.93 8.31 -92.70 -0.77 12.16 16 Total: -1.00 -60.57 285.17 0.61 -59.96 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 1.06 Total: 18.44 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 3.99 Total: -12.65 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -2.62 Total: -128.96 kcal Atomic # 8 Polarization: -102.85 SS G_CDS: -3.53 Total: -106.38 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 16 Polarization: 127.97 SS G_CDS: -0.32 Total: 127.65 kcal Total: -60.57 0.61 -59.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049677.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.493 kcal (2) G-P(sol) polarization free energy of solvation -60.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds