Wall clock time and date at job start Mon Mar 30 2020 04:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.58374 * 2 1 4 4 C 1.53192 * 109.58930 * 120.28543 * 2 1 3 5 5 C 1.53036 * 109.31427 * 174.56574 * 4 2 1 6 6 C 1.53042 * 109.53591 * 298.63413 * 5 4 2 7 7 C 1.53194 * 109.31379 * 61.36619 * 6 5 4 8 8 N 1.46925 * 108.77496 * 305.36581 * 7 6 5 9 9 S 1.65599 * 120.62947 * 233.59164 * 8 7 6 10 10 O 1.42098 * 106.40423 * 15.69947 * 9 8 7 11 11 O 1.42097 * 106.40380 * 148.62819 * 9 8 7 12 12 N 1.65605 * 107.21540 * 262.16543 * 9 8 7 13 13 C 1.46500 * 119.99817 * 269.99980 * 12 9 8 14 14 C 1.36933 * 120.00143 * 89.99979 * 12 9 8 15 15 H 1.07996 * 119.99915 * 24.48592 * 14 12 9 16 16 C 1.38812 * 120.00023 * 204.49047 * 14 12 9 17 17 N 1.31624 * 119.99987 * 12.68013 * 16 14 12 18 18 Si 1.86798 * 120.00292 * 192.68674 * 16 14 12 19 19 H 1.48505 * 109.47002 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47365 * 119.99156 * 18 16 14 21 21 H 1.48495 * 109.47119 * 240.00027 * 18 16 14 22 22 H 1.08998 * 109.46945 * 310.73271 * 1 2 3 23 23 H 1.08994 * 109.47447 * 70.73189 * 1 2 3 24 24 H 1.09004 * 109.46853 * 190.74039 * 1 2 3 25 25 H 1.09004 * 109.49252 * 294.51609 * 4 2 1 26 26 H 1.08997 * 109.49576 * 54.57590 * 4 2 1 27 27 H 1.09007 * 109.46125 * 58.65395 * 5 4 2 28 28 H 1.08997 * 109.46522 * 178.62556 * 5 4 2 29 29 H 1.09003 * 109.49750 * 181.31506 * 6 5 4 30 30 H 1.08990 * 109.49783 * 301.41293 * 6 5 4 31 31 H 1.09002 * 109.58716 * 65.15062 * 7 6 5 32 32 H 1.09000 * 109.58791 * 185.43571 * 7 6 5 33 33 H 1.09000 * 109.47394 * 87.56623 * 13 12 9 34 34 H 1.09004 * 109.47375 * 207.56140 * 13 12 9 35 35 H 1.09001 * 109.47476 * 327.56087 * 13 12 9 36 36 H 0.97001 * 119.99890 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0437 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 6 3.9604 -1.6608 -0.0600 7 6 3.4685 -0.9435 -1.3211 8 7 2.0254 -0.6990 -1.1936 9 16 0.9771 -1.2013 -2.3731 10 8 1.6896 -2.1360 -3.1717 11 8 -0.2453 -1.5111 -1.7181 12 7 0.6695 0.1045 -3.3440 13 6 -0.4488 0.9993 -3.0356 14 6 1.4603 0.3479 -4.4351 15 1 2.0039 -0.4616 -4.8993 16 6 1.5632 1.6351 -4.9444 17 7 1.1127 2.6567 -4.2473 18 14 2.3410 1.9176 -6.6191 19 1 2.7644 0.6155 -7.1942 20 1 1.3524 2.5599 -7.5221 21 1 3.5250 2.8016 -6.4722 22 1 -0.3633 0.6706 0.7787 23 1 -0.3634 0.3391 -0.9700 24 1 -0.3633 -1.0097 0.1915 25 1 1.7639 -0.1654 2.1371 26 1 1.6045 -1.7244 1.2924 27 1 4.0046 0.1529 1.1021 28 1 3.9382 -1.3392 2.0701 29 1 5.0449 -1.7624 -0.0989 30 1 3.5038 -2.6487 -0.0019 31 1 3.9920 0.0065 -1.4289 32 1 3.6598 -1.5672 -2.1944 33 1 -0.1147 1.7738 -2.3452 34 1 -0.8079 1.4624 -3.9547 35 1 -1.2559 0.4277 -2.5774 36 1 1.1843 3.5561 -4.6034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:22 Heat of formation + Delta-G solvation = -62.742875 kcal Electronic energy + Delta-G solvation = -19903.538724 eV Core-core repulsion = 16936.066785 eV Total energy + Delta-G solvation = -2967.471939 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.19094 -36.27701 -35.53438 -34.56602 -32.30493 -31.48362 -31.28789 -26.89905 -26.12655 -23.56824 -23.36297 -21.63804 -19.98196 -18.37890 -17.19989 -16.55131 -16.16510 -15.32144 -14.58657 -14.29632 -14.08519 -13.94079 -13.54518 -13.20636 -12.97108 -12.55427 -12.21509 -11.94294 -11.79504 -11.64175 -11.29649 -11.05213 -10.97594 -10.87422 -10.67352 -10.66608 -10.46723 -10.29718 -10.21700 -10.17982 -9.88718 -9.43125 -9.13856 -8.16489 -7.94275 -6.37183 -3.93330 1.89378 3.15873 3.23017 3.29702 3.96889 4.24733 4.79199 4.93724 5.11192 5.13910 5.17976 5.44183 5.63191 5.70458 5.79184 5.84539 6.01233 6.07007 6.13989 6.22831 6.27783 6.34224 6.39251 6.42369 6.54667 6.67044 6.83267 6.97638 7.07096 7.14948 7.40990 7.45146 7.62344 8.42960 8.87046 9.29953 10.63836 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025430 B = 0.008548 C = 0.007988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.793977 B = 3274.956729 C = 3504.461583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.158 3.842 3 H 0.062 0.938 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.132 4.132 7 C 0.123 3.877 8 N -1.007 6.007 9 S 2.688 3.312 10 O -1.004 7.004 11 O -1.013 7.013 12 N -0.835 5.835 13 C 0.126 3.874 14 C -0.274 4.274 15 H 0.106 0.894 16 C 0.034 3.966 17 N -0.858 5.858 18 Si 0.920 3.080 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.281 1.281 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 -1.300 7.455 8.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.051 3.949 3 H 0.080 0.920 4 C -0.166 4.166 5 C -0.152 4.152 6 C -0.172 4.172 7 C -0.003 4.003 8 N -0.841 5.841 9 S 2.710 3.290 10 O -0.989 6.989 11 O -0.998 6.998 12 N -0.667 5.667 13 C -0.020 4.020 14 C -0.415 4.415 15 H 0.124 0.876 16 C -0.175 4.175 17 N -0.498 5.498 18 Si 0.746 3.254 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.207 1.207 22 H 0.070 0.930 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.233 -2.129 7.494 8.104 hybrid contribution 0.710 0.786 -0.585 1.210 sum 2.943 -1.343 6.909 7.629 Atomic orbital electron populations 1.22778 0.93502 1.03961 1.03489 1.20728 0.94184 0.95160 0.84852 0.91964 1.21954 0.95745 1.01094 0.97796 1.21451 0.96110 1.00195 0.97461 1.21898 1.00162 0.99371 0.95728 1.21199 0.81766 0.99645 0.97695 1.59232 1.17089 1.73237 1.34553 1.07157 0.72841 0.77205 0.71781 1.93383 1.74060 1.62659 1.68770 1.93493 1.45992 1.85732 1.74537 1.53681 1.34080 1.47165 1.31740 1.21232 0.86681 0.92415 1.01708 1.19651 1.25692 0.94496 1.01664 0.87634 1.25515 0.96931 0.95156 0.99869 1.70090 1.43991 0.99058 1.36696 0.85960 0.78749 0.78838 0.81825 1.18951 1.20521 1.20667 0.92997 0.90299 0.89694 0.91802 0.91902 0.92095 0.92629 0.91697 0.92113 0.92474 0.89349 0.93508 0.90664 0.94305 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 7.59 37.16 0.28 -2.97 16 2 C 0.16 2.79 3.51 -67.60 -0.24 2.55 16 3 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.13 -1.86 5.36 -26.61 -0.14 -2.00 16 5 C -0.11 -1.53 5.88 -26.69 -0.16 -1.69 16 6 C -0.13 -1.95 6.08 -26.61 -0.16 -2.11 16 7 C 0.12 2.23 6.50 -3.71 -0.02 2.21 16 8 N -1.01 -20.25 3.35 -106.47 -0.36 -20.61 16 9 S 2.69 63.27 5.69 -107.50 -0.61 62.66 16 10 O -1.00 -26.07 15.37 -57.17 -0.88 -26.95 16 11 O -1.01 -24.20 12.22 -57.17 -0.70 -24.90 16 12 N -0.84 -20.66 3.36 -66.69 -0.22 -20.88 16 13 C 0.13 2.90 7.31 59.85 0.44 3.34 16 14 C -0.27 -7.12 9.40 -15.06 -0.14 -7.26 16 15 H 0.11 2.79 7.19 -52.49 -0.38 2.41 16 16 C 0.03 0.86 5.05 -17.43 -0.09 0.77 16 17 N -0.86 -21.76 10.83 55.49 0.60 -21.16 16 18 Si 0.92 19.61 29.57 -169.99 -5.03 14.58 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.08 1.58 2.76 -51.93 -0.14 1.44 16 24 H 0.08 1.62 6.60 -51.93 -0.34 1.28 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.96 8.11 -51.93 -0.42 0.53 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.71 6.77 -51.93 -0.35 1.35 16 33 H 0.05 1.07 7.33 -51.93 -0.38 0.69 16 34 H 0.07 1.79 6.92 -51.93 -0.36 1.43 16 35 H 0.04 0.83 6.35 -51.93 -0.33 0.50 16 36 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 LS Contribution 283.85 15.07 4.28 4.28 Total: -1.00 -28.85 283.85 -8.37 -37.22 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.22 Total: 2.91 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.23 Total: -7.16 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.02 Total: -62.65 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -1.58 Total: -51.85 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Atomic # 16 Polarization: 63.27 SS G_CDS: -0.61 Total: 62.66 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.85 -8.37 -37.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.518 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds