Wall clock time and date at job start Mon Mar 30 2020 04:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.58374 * 2 1 4 4 C 1.53192 * 109.58930 * 120.28543 * 2 1 3 5 5 C 1.53036 * 109.31427 * 174.56574 * 4 2 1 6 6 C 1.53042 * 109.53591 * 298.63413 * 5 4 2 7 7 C 1.53194 * 109.31379 * 61.36619 * 6 5 4 8 8 N 1.46925 * 108.77496 * 305.36581 * 7 6 5 9 9 S 1.65599 * 120.62947 * 233.59164 * 8 7 6 10 10 O 1.42098 * 106.40423 * 15.69947 * 9 8 7 11 11 O 1.42097 * 106.40380 * 148.62819 * 9 8 7 12 12 N 1.65605 * 107.21540 * 262.16543 * 9 8 7 13 13 C 1.46500 * 119.99817 * 269.99980 * 12 9 8 14 14 C 1.36933 * 120.00143 * 89.99979 * 12 9 8 15 15 H 1.07996 * 119.99915 * 24.48592 * 14 12 9 16 16 C 1.38812 * 120.00023 * 204.49047 * 14 12 9 17 17 N 1.31624 * 119.99987 * 12.68013 * 16 14 12 18 18 Si 1.86798 * 120.00292 * 192.68674 * 16 14 12 19 19 H 1.48505 * 109.47002 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47365 * 119.99156 * 18 16 14 21 21 H 1.48495 * 109.47119 * 240.00027 * 18 16 14 22 22 H 1.08998 * 109.46945 * 310.73271 * 1 2 3 23 23 H 1.08994 * 109.47447 * 70.73189 * 1 2 3 24 24 H 1.09004 * 109.46853 * 190.74039 * 1 2 3 25 25 H 1.09004 * 109.49252 * 294.51609 * 4 2 1 26 26 H 1.08997 * 109.49576 * 54.57590 * 4 2 1 27 27 H 1.09007 * 109.46125 * 58.65395 * 5 4 2 28 28 H 1.08997 * 109.46522 * 178.62556 * 5 4 2 29 29 H 1.09003 * 109.49750 * 181.31506 * 6 5 4 30 30 H 1.08990 * 109.49783 * 301.41293 * 6 5 4 31 31 H 1.09002 * 109.58716 * 65.15062 * 7 6 5 32 32 H 1.09000 * 109.58791 * 185.43571 * 7 6 5 33 33 H 1.09000 * 109.47394 * 87.56623 * 13 12 9 34 34 H 1.09004 * 109.47375 * 207.56140 * 13 12 9 35 35 H 1.09001 * 109.47476 * 327.56087 * 13 12 9 36 36 H 0.97001 * 119.99890 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0437 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 6 3.9604 -1.6608 -0.0600 7 6 3.4685 -0.9435 -1.3211 8 7 2.0254 -0.6990 -1.1936 9 16 0.9771 -1.2013 -2.3731 10 8 1.6896 -2.1360 -3.1717 11 8 -0.2453 -1.5111 -1.7181 12 7 0.6695 0.1045 -3.3440 13 6 -0.4488 0.9993 -3.0356 14 6 1.4603 0.3479 -4.4351 15 1 2.0039 -0.4616 -4.8993 16 6 1.5632 1.6351 -4.9444 17 7 1.1127 2.6567 -4.2473 18 14 2.3410 1.9176 -6.6191 19 1 2.7644 0.6155 -7.1942 20 1 1.3524 2.5599 -7.5221 21 1 3.5250 2.8016 -6.4722 22 1 -0.3633 0.6706 0.7787 23 1 -0.3634 0.3391 -0.9700 24 1 -0.3633 -1.0097 0.1915 25 1 1.7639 -0.1654 2.1371 26 1 1.6045 -1.7244 1.2924 27 1 4.0046 0.1529 1.1021 28 1 3.9382 -1.3392 2.0701 29 1 5.0449 -1.7624 -0.0989 30 1 3.5038 -2.6487 -0.0019 31 1 3.9920 0.0065 -1.4289 32 1 3.6598 -1.5672 -2.1944 33 1 -0.1147 1.7738 -2.3452 34 1 -0.8079 1.4624 -3.9547 35 1 -1.2559 0.4277 -2.5774 36 1 1.1843 3.5561 -4.6034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:21 Heat of formation + Delta-G solvation = -81.752176 kcal Electronic energy + Delta-G solvation = -19904.363029 eV Core-core repulsion = 16936.066785 eV Total energy + Delta-G solvation = -2968.296244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.57966 -38.21149 -37.40969 -36.57595 -33.67701 -33.18644 -32.87720 -28.52269 -27.77270 -25.34665 -24.85859 -23.03804 -21.30032 -20.22975 -19.02500 -18.40098 -17.90889 -16.99118 -16.37936 -15.90014 -15.48506 -15.17277 -15.15583 -14.87547 -14.53012 -14.24473 -13.77947 -13.70467 -13.43747 -13.21096 -13.06676 -12.76822 -12.71962 -12.62593 -12.24467 -12.17075 -12.09877 -11.92305 -11.65777 -11.59090 -11.42386 -11.03396 -10.95711 -9.90734 -9.65329 -8.23527 -5.90778 0.04252 1.45593 1.48517 1.60867 2.22691 2.48900 2.92134 3.04944 3.70808 3.76840 3.95266 4.05022 4.23488 4.32498 4.45915 4.53920 4.55986 4.76239 4.81919 4.86331 4.93985 4.99106 5.08562 5.13781 5.20536 5.21595 5.29501 5.40984 5.47612 5.52174 5.60850 5.69407 6.01267 6.51447 6.97249 7.38788 8.78269 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025430 B = 0.008548 C = 0.007988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.793977 B = 3274.956729 C = 3504.461583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.150 3.850 3 H 0.066 0.934 4 C -0.123 4.123 5 C -0.112 4.112 6 C -0.128 4.128 7 C 0.115 3.885 8 N -1.009 6.009 9 S 2.725 3.275 10 O -1.031 7.031 11 O -1.017 7.017 12 N -0.858 5.858 13 C 0.139 3.861 14 C -0.313 4.313 15 H 0.089 0.911 16 C 0.002 3.998 17 N -0.884 5.884 18 Si 0.977 3.023 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.274 1.274 22 H 0.084 0.916 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -1.222 9.293 10.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.044 3.956 3 H 0.084 0.916 4 C -0.162 4.162 5 C -0.149 4.149 6 C -0.167 4.167 7 C -0.011 4.011 8 N -0.847 5.847 9 S 2.744 3.256 10 O -1.015 7.015 11 O -1.001 7.001 12 N -0.690 5.690 13 C -0.008 4.008 14 C -0.451 4.451 15 H 0.107 0.893 16 C -0.204 4.204 17 N -0.524 5.524 18 Si 0.801 3.199 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.200 1.200 22 H 0.103 0.897 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.223 -2.009 9.285 10.032 hybrid contribution 0.375 0.652 -0.979 1.235 sum 3.597 -1.356 8.306 9.153 Atomic orbital electron populations 1.22756 0.93940 1.03946 1.03356 1.21007 0.93958 0.95574 0.85055 0.91611 1.21947 0.96690 1.00672 0.96888 1.21472 0.95062 1.00643 0.97742 1.21891 1.01734 0.98703 0.94375 1.21390 0.80329 1.00139 0.99192 1.58729 1.17837 1.73537 1.34560 1.04999 0.72770 0.75975 0.71867 1.93359 1.74838 1.63336 1.70004 1.93516 1.46356 1.85686 1.74585 1.53489 1.35320 1.46863 1.33362 1.21089 0.86606 0.92245 1.00811 1.19545 1.26875 0.94690 1.03977 0.89296 1.26105 0.97217 0.94599 1.02496 1.70153 1.45258 0.99222 1.37795 0.85113 0.78126 0.78444 0.78198 1.19261 1.19917 1.19987 0.89709 0.92626 0.90845 0.88893 0.92510 0.91406 0.89740 0.88961 0.92696 0.91966 0.91309 0.93875 0.92190 0.93191 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.28 7.59 71.98 0.55 -5.73 16 2 C 0.15 4.98 3.51 44.98 0.16 5.14 16 3 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 4 C -0.12 -3.16 5.36 30.67 0.16 -2.99 16 5 C -0.11 -2.53 5.88 30.62 0.18 -2.35 16 6 C -0.13 -3.39 6.08 30.67 0.19 -3.20 16 7 C 0.12 4.04 6.50 86.36 0.56 4.60 16 8 N -1.01 -39.71 3.35 -490.77 -1.64 -41.35 16 9 S 2.72 129.12 5.69 -56.49 -0.32 128.79 16 10 O -1.03 -54.43 15.37 -128.00 -1.97 -56.40 16 11 O -1.02 -48.36 12.22 -128.00 -1.56 -49.93 16 12 N -0.86 -43.37 3.36 -364.90 -1.23 -44.60 16 13 C 0.14 6.52 7.31 127.77 0.93 7.45 16 14 C -0.31 -16.78 9.40 84.03 0.79 -15.99 16 15 H 0.09 4.91 7.19 -2.91 -0.02 4.89 16 16 C 0.00 0.08 5.05 84.86 0.43 0.51 16 17 N -0.88 -45.56 10.83 21.65 0.23 -45.32 16 18 Si 0.98 40.75 29.57 68.60 2.03 42.78 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.06 2.18 2.76 -2.39 -0.01 2.18 16 24 H 0.07 2.69 6.60 -2.38 -0.02 2.68 16 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 1.54 8.11 -2.39 -0.02 1.52 16 27 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 32 H 0.07 2.67 6.77 -2.39 -0.02 2.65 16 33 H 0.04 2.01 7.33 -2.39 -0.02 2.00 16 34 H 0.06 2.94 6.92 -2.38 -0.02 2.92 16 35 H 0.05 2.17 6.35 -2.39 -0.02 2.15 16 36 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 Total: -1.00 -62.22 283.85 0.56 -61.66 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.07 Total: 16.91 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 3.95 Total: -12.55 kcal Atomic # 7 Polarization: -128.64 SS G_CDS: -2.63 Total: -131.27 kcal Atomic # 8 Polarization: -102.79 SS G_CDS: -3.53 Total: -106.32 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Atomic # 16 Polarization: 129.12 SS G_CDS: -0.32 Total: 128.79 kcal Total: -62.22 0.56 -61.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.094 kcal (2) G-P(sol) polarization free energy of solvation -62.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds