Wall clock time and date at job start Mon Mar 30 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21289 * 120.00098 * 2 1 4 4 N 1.34775 * 120.00137 * 179.97438 * 2 1 3 5 5 C 1.39922 * 120.00127 * 174.83144 * 4 2 1 6 6 C 1.38949 * 120.03491 * 326.36386 * 5 4 2 7 7 C 1.38130 * 120.06584 * 180.02562 * 6 5 4 8 8 C 1.38185 * 120.14650 * 359.95457 * 7 6 5 9 9 C 1.38903 * 120.06349 * 359.97438 * 8 7 6 10 10 N 1.39928 * 120.03011 * 180.02562 * 9 8 7 11 11 C 1.34773 * 120.00063 * 146.77937 * 10 9 8 12 12 O 1.21288 * 119.99685 * 354.77147 * 11 10 9 13 13 C 1.50696 * 120.00139 * 174.78243 * 11 10 9 14 14 C 1.50706 * 109.46858 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00110 * 359.97438 * 14 13 11 16 16 C 1.37881 * 119.99455 * 179.97438 * 14 13 11 17 17 N 1.31509 * 120.00330 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99633 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47454 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47279 * 119.99876 * 18 16 14 21 21 H 1.48497 * 109.47478 * 239.99827 * 18 16 14 22 22 C 1.38729 * 120.03276 * 146.61289 * 5 4 2 23 23 H 1.08995 * 109.47737 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.47235 * 300.00184 * 1 2 3 25 25 H 1.09001 * 109.47658 * 59.99788 * 1 2 3 26 26 H 0.96998 * 119.99863 * 354.83815 * 4 2 1 27 27 H 1.07998 * 119.96589 * 0.02562 * 6 5 4 28 28 H 1.08003 * 119.92599 * 179.97438 * 7 6 5 29 29 H 1.07996 * 119.96524 * 180.02562 * 8 7 6 30 30 H 0.97003 * 119.99875 * 326.49314 * 10 9 8 31 31 H 1.09008 * 109.46972 * 299.99327 * 13 11 10 32 32 H 1.08991 * 109.47722 * 59.99539 * 13 11 10 33 33 H 0.97002 * 120.00196 * 179.97438 * 17 16 14 34 34 H 1.07993 * 120.07136 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5758 -1.1697 -0.1086 6 6 4.2154 -0.2008 -0.8720 7 6 5.5925 -0.2030 -0.9807 8 6 6.3384 -1.1674 -0.3303 9 6 5.7050 -2.1378 0.4356 10 7 6.4610 -3.1137 1.0943 11 6 6.0470 -3.5994 2.2813 12 8 5.0718 -3.1246 2.8240 13 6 6.7960 -4.7323 2.9345 14 6 6.1343 -5.0840 4.2421 15 1 5.2592 -4.5412 4.5676 16 6 6.6461 -6.0988 5.0226 17 7 7.7113 -6.7602 4.6258 18 14 5.8264 -6.5344 6.6436 19 1 4.6540 -5.6488 6.8592 20 1 5.3770 -7.9493 6.6067 21 1 6.7959 -6.3517 7.7535 22 6 4.3214 -2.1426 0.5410 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6988 -2.0055 0.0765 27 1 3.6353 0.5548 -1.3810 28 1 6.0873 0.5510 -1.5750 29 1 7.4148 -1.1661 -0.4169 30 1 7.2810 -3.4437 0.6945 31 1 6.7862 -5.6014 2.2766 32 1 7.8261 -4.4281 3.1193 33 1 8.0716 -7.4739 5.1752 34 1 3.8263 -2.8989 1.1320 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049821926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:11 Heat of formation + Delta-G solvation = -49.848625 kcal Electronic energy + Delta-G solvation = -18684.845405 eV Core-core repulsion = 15582.488652 eV Total energy + Delta-G solvation = -3102.356754 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58068 -39.50287 -37.74976 -35.08282 -33.75780 -33.02659 -30.88678 -30.09123 -28.75481 -28.07258 -24.07575 -22.65956 -22.48407 -20.53715 -19.57675 -18.13850 -17.07897 -16.42659 -16.10629 -15.97735 -15.58037 -15.23094 -14.75571 -14.46824 -13.97350 -13.82365 -13.37455 -12.96703 -12.88235 -12.69771 -12.40090 -12.18640 -11.82023 -11.53053 -11.35279 -10.82788 -10.76602 -10.46671 -10.09379 -10.03104 -9.64271 -9.34858 -8.82778 -8.51023 -8.19150 -7.70819 -6.13108 -4.13357 1.36800 1.58525 2.49631 2.98413 3.29161 3.36586 3.44156 3.46836 3.70757 4.07644 4.43139 4.55474 4.89011 5.07829 5.13498 5.25570 5.32005 5.41199 5.49848 5.61180 5.69058 5.78425 6.08958 6.36316 6.45629 6.57646 6.62100 6.83716 7.05166 7.20416 7.32205 7.33434 7.84539 7.91304 8.00293 8.26267 8.96472 8.99399 9.52192 10.99206 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024891 B = 0.004374 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.628115 B = 6400.415050 C = 7345.299425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.509 3.491 3 O -0.529 6.529 4 N -0.670 5.670 5 C 0.159 3.841 6 C -0.148 4.148 7 C -0.084 4.084 8 C -0.170 4.170 9 C 0.183 3.817 10 N -0.690 5.690 11 C 0.513 3.487 12 O -0.522 6.522 13 C 0.006 3.994 14 C -0.511 4.511 15 H 0.076 0.924 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.902 3.098 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.151 4.151 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.411 0.589 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.409 0.591 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.262 0.738 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.537 9.004 -13.538 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.298 3.702 3 O -0.405 6.405 4 N -0.316 5.316 5 C 0.065 3.935 6 C -0.169 4.169 7 C -0.103 4.103 8 C -0.191 4.191 9 C 0.087 3.913 10 N -0.336 5.336 11 C 0.304 3.696 12 O -0.396 6.396 13 C -0.033 4.033 14 C -0.549 4.549 15 H 0.094 0.906 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.729 3.271 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.174 4.174 23 H 0.097 0.903 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.247 0.753 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.244 0.756 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.760 9.895 -13.014 18.548 hybrid contribution -0.071 -0.953 0.764 1.223 sum -8.831 8.942 -12.250 17.550 Atomic orbital electron populations 1.21849 0.90888 1.04590 1.05539 1.20970 0.90812 0.83209 0.75218 1.90743 1.70500 1.31230 1.48039 1.43662 1.05475 1.09885 1.72544 1.17517 0.82459 0.97109 0.96463 1.20947 0.94820 1.00277 1.00892 1.20729 0.93172 0.97612 0.98774 1.20905 0.99887 0.95616 1.02701 1.17593 0.90306 0.89978 0.93442 1.44175 1.27165 1.40189 1.22086 1.22333 0.85016 0.83912 0.78299 1.90560 1.27557 1.58946 1.62539 1.19287 0.96619 0.90493 0.96914 1.21174 1.13484 1.17347 1.02916 0.90573 1.25002 0.95029 0.95947 0.98532 1.69959 1.22453 1.23018 1.38451 0.86366 0.79569 0.78139 0.83009 1.19479 1.20953 1.20927 1.20887 0.92724 1.02053 1.01720 0.90272 0.88403 0.88446 0.75265 0.85317 0.85695 0.85750 0.75559 0.92958 0.93096 0.92839 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.39 36.00 0.37 -0.79 16 2 C 0.51 6.16 7.68 -10.99 -0.08 6.08 16 3 O -0.53 -8.61 14.80 5.55 0.08 -8.53 16 4 N -0.67 -8.11 5.34 -9.88 -0.05 -8.16 16 5 C 0.16 2.41 6.27 -83.72 -0.52 1.88 16 6 C -0.15 -2.17 8.65 -39.36 -0.34 -2.51 16 7 C -0.08 -1.11 10.03 -39.64 -0.40 -1.50 16 8 C -0.17 -2.37 9.96 -39.35 -0.39 -2.76 16 9 C 0.18 3.05 6.27 -83.72 -0.53 2.52 16 10 N -0.69 -11.88 5.34 -9.88 -0.05 -11.93 16 11 C 0.51 11.31 7.56 -10.99 -0.08 11.23 16 12 O -0.52 -13.11 13.16 5.55 0.07 -13.03 16 13 C 0.01 0.15 5.46 -29.03 -0.16 -0.01 16 14 C -0.51 -14.43 8.92 -34.44 -0.31 -14.74 16 15 H 0.08 2.25 6.75 -52.49 -0.35 1.89 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 18 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.15 -2.57 8.57 -39.21 -0.34 -2.91 16 23 H 0.08 0.36 7.92 -51.93 -0.41 -0.05 16 24 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.41 3.70 8.66 -40.82 -0.35 3.35 16 27 H 0.13 1.86 6.43 -52.49 -0.34 1.53 16 28 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.41 5.68 8.82 -40.82 -0.36 5.32 16 31 H 0.05 1.28 8.14 -51.92 -0.42 0.86 16 32 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.14 2.59 6.43 -52.49 -0.34 2.26 16 LS Contribution 300.01 15.07 4.52 4.52 Total: -1.00 -34.90 300.01 -6.41 -41.32 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -3.83 Total: 6.22 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.87 Total: -2.04 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.63 Total: -45.16 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.16 Total: -21.56 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.90 -6.41 -41.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.532 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds